ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII2074 suspect: HSP K KOG4011 Transcription Transcription initiation factor TFIID, subunit TAF7
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII2074 737967 740171 735
(735 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YMR227c [K] KOG4011 Transcription initiation factor TFIID subuni... 323 4e-88
SPAC13F5.02c [K] KOG4011 Transcription initiation factor TFIID s... 125 2e-28
CE03416 [K] KOG4011 Transcription initiation factor TFIID subuni... 79 2e-14
7298958 [K] KOG4011 Transcription initiation factor TFIID subuni... 68 4e-11
CE24137 [K] KOG4011 Transcription initiation factor TFIID subuni... 67 1e-10
Hs13376333 [K] KOG4011 Transcription initiation factor TFIID sub... 63 1e-09
>YMR227c [K] KOG4011 Transcription initiation factor TFIID subunit TAF7
Length = 590
Score = 323 bits (829), Expect = 4e-88
Identities = 159/282 (56%), Positives = 204/282 (71%), Gaps = 6/282 (2%)
Query: 106 KLKINLKKREDSHPQLVPXXXXXXXXXXRKSTSVVK----TPKFRIKPVRVPGEGYDSEA 161
KLKINLKK+++S +K+ VK PK R+KP+R+PGE YDSEA
Sbjct: 44 KLKINLKKKKESADGKEKKNSLKLKLNLKKNEEPVKKIHKAPKLRLKPIRIPGEAYDSEA 103
Query: 162 SDVEDDPLIEEGIILRVLPDLSAEFVKNSIESGDYSDVSIKWKGERHAVVKVNGVQYGAV 221
SD+EDDPLIE G+ILR+LPD+ EFVKNS+ESGDYS +SIKWK ERHAVV +N V YGA+
Sbjct: 104 SDIEDDPLIESGVILRILPDIQLEFVKNSLESGDYSGISIKWKNERHAVVTINDVMYGAI 163
Query: 222 LVNLPSIIEVNKSVDRKNLLKTFDVSQMLICVRTVNKEEEVFSLQVSDTEDLTKKHFEEY 281
LV+LP++IEVNKSVDRKNLLKTFDVSQML+C+R + +EEEV++L+ DTEDL KHFE
Sbjct: 164 LVDLPTVIEVNKSVDRKNLLKTFDVSQMLLCIRPIQEEEEVYALEAPDTEDLVVKHFEGI 223
Query: 282 QKEITEQRKQQLRGYNGGPLTDAESKNIEQIINKRYDYKHGITPPLYNARNRRFRHRMGP 341
+ EI E ++ L+GYNG PL+D E+K++++I K YDYKHGI+PPLYN RNRRFR +M P
Sbjct: 224 EDEIWENKETFLKGYNGAPLSDMEAKHLKEIALKGYDYKHGISPPLYNVRNRRFRRKMDP 283
Query: 342 TAFDYVERTVXXXXXXXXXXXXFGYELVNEDAIQ--QQRSTS 381
DYVE+ V Y+LV++ +Q Q+R +S
Sbjct: 284 NEIDYVEKVVDMLLKQDKQAEEVSYDLVDKSELQARQERVSS 325
>SPAC13F5.02c [K] KOG4011 Transcription initiation factor TFIID subunit TAF7
Length = 393
Score = 125 bits (314), Expect = 2e-28
Identities = 90/297 (30%), Positives = 128/297 (42%), Gaps = 69/297 (23%)
Query: 91 NNNNVGTSKGSSRPMKLKINLKKREDSHPQLVPXXXXXXXXXXRKSTSVVKTPKFRIKPV 150
N++ T P KI +K RE P+L K R+K V
Sbjct: 14 NDSRSSTPATGPPPPIPKIKIKTREPKGPRLT---------------------KIRLKRV 52
Query: 151 RVPGEGYDSEASDVEDDPLIEEGIILRVLPDLSAEFVKNSIES---GDYSDVSIKWKGER 207
R PG GYDSEASD E+D IEE IILR+ P E+V+ +IE+ G +D+ +K+K +R
Sbjct: 53 REPGLGYDSEASDREEDTYIEEQIILRLPPGEDCEYVRKAIENREVGRGADIWVKFKDQR 112
Query: 208 HAVVKVNGVQYGAVLVNLPSIIEVNKSVDRKNLLKTFDVSQMLICVRTVNKEEEVFSLQV 267
AVV VNG Y A LV+LP IIE NKS D+K + K D+ QMLI + E V + Q+
Sbjct: 113 RAVVHVNGHLYAAKLVDLPCIIESNKSFDKKVIFKAADICQMLIATERIEHENSVLNTQL 172
Query: 268 SDTEDLTKKHFEEYQKEITEQRKQQLRGYNGGPLTDAESKNIEQIINKRYDYKHGITPPL 327
+ Y Y HG+T P+
Sbjct: 173 KQAD---------------------------------------------YIYPHGLTTPM 187
Query: 328 YNARNRRFRHRMGPTAFDYVERTVXXXXXXXXXXXXFGYELVNEDAIQQQRSTSAAD 384
+ R +RFR R+ + VE V EL+++ + + S + ++
Sbjct: 188 HWVRQKRFRKRVSNRTIEAVENEVDRLLAMDERAESTSNELIDQAQLARDSSIALSE 244
>CE03416 [K] KOG4011 Transcription initiation factor TFIID subunit TAF7
Length = 254
Score = 79.0 bits (193), Expect = 2e-14
Identities = 56/182 (30%), Positives = 90/182 (48%), Gaps = 17/182 (9%)
Query: 161 ASDVEDDPLIEEGIILRVLPDLSAEFVKNSIESGDYSDVSIKWKGERHAV-VKVNGVQYG 219
A ED+ EE +ILRV PD+ K D ++ I ++ + V +++
Sbjct: 14 AKQHEDNEEWEEHLILRVPPDVVNRMEKAVNGEIDAEELGINFQEDNRTVQIRLGNQILP 73
Query: 220 AVLVNLPSIIEVNKSVDRKNLLKTFDVSQMLICVRTVNKEEEVFSLQVSDTEDLTKKHFE 279
A +++LP+I EV+K++D L K DVSQM+IC E + ++ + L + E
Sbjct: 74 AKILDLPTINEVHKTLDNSTLYKVTDVSQMIIC-------EGAMPIPKAERKKLNPEGIE 126
Query: 280 EYQKEITEQRKQQLRGYNGGPLTDAESKNIEQIIN---KRYDYKHGITPPLYNARNRRFR 336
+ +I ++ G T+ +SK Q+ K Y Y HGITPP+ NA+ RRFR
Sbjct: 127 NREPKI------EVEGSGVENKTNVQSKTARQLAKEKVKEYHYPHGITPPMKNAKKRRFR 180
Query: 337 HR 338
+
Sbjct: 181 KK 182
>7298958 [K] KOG4011 Transcription initiation factor TFIID subunit TAF7
Length = 479
Score = 68.2 bits (165), Expect = 4e-11
Identities = 61/246 (24%), Positives = 110/246 (43%), Gaps = 43/246 (17%)
Query: 165 EDDPLIEEGIILRVLPDLSAEFVKNSIESGDYSD-VSIKWKGE-RHAVVKVNGVQYGAVL 222
+D +E I+RV +L A+ V +I +G D ++I+ + R+ V+++ L
Sbjct: 50 DDGVELESQFIMRVPKEL-ADTVHEAINAGTIKDRLTIQLDPDLRYGEVRIDDQILYTKL 108
Query: 223 VNLPSIIEVNKSVDRKNLLKTFDVSQMLICVRTVNKEEEVFSLQVSDTEDLTKKHFEEYQ 282
V+LP+++E K++D K+ K+ D+ Q+LIC KEE ED T+K
Sbjct: 109 VDLPTVVESYKTIDNKSFYKSADICQILIC-----KEER---------EDETEKESPNKN 154
Query: 283 KEITEQRKQQLRGYNGGPLTDAESKNIEQIINKRYDYKHGITPPLYNARNRRFRHRMGPT 342
K+ + ++K+Y + HGITPP N R RRFR +
Sbjct: 155 KKKDPNK-----------------------VDKKYLFPHGITPPCKNVRKRRFRKTLKKK 191
Query: 343 AFD--YVERTVXXXXXXXXXXXXFGYELVNEDAIQQQRSTSAADLAHYQKAGEHMDETSS 400
+ +E+ V YE++NE+ + +D+ Y A + + + S+
Sbjct: 192 NVEAPEIEKEVKHLLRIDNEAVRVDYEIINEED-KPMDELEQSDIKPYNDADDDLQDEST 250
Query: 401 VGYSQE 406
+ S++
Sbjct: 251 MHASEK 256
>CE24137 [K] KOG4011 Transcription initiation factor TFIID subunit TAF7
Length = 236
Score = 66.6 bits (161), Expect = 1e-10
Identities = 48/180 (26%), Positives = 83/180 (45%), Gaps = 39/180 (21%)
Query: 158 DSEASDVEDDPLIEEGIILRVLPDLSAEFVKNSIESGDYSDVSIKWKGE-RHAVVKVNGV 216
D+ + +D P E I+LRV D K G + + S+ + R++ V++
Sbjct: 23 DTPVASSDDPPDFESHIVLRVPEDCVGRIEKIIQSDGKHEEFSLNLNSDARNSTVRIGNQ 82
Query: 217 QYGAVLVNLPSIIEVNKSVDRKNLLKTFDVSQMLICVRTVNKEEEVFSLQVSDTEDLTKK 276
+++LP+I E++K++D K+L K DVSQ+L+C + + S+ S +ED +K
Sbjct: 83 LLNGKILDLPTITEIHKTLDNKSLYKVADVSQILVCT-----HDSINSI-ASSSEDAAQK 136
Query: 277 HFEEYQKEITEQRKQQLRGYNGGPLTDAESKNIEQIINKRYDYKHGITPPLYNARNRRFR 336
A +K K++ Y HG+TPP+ +AR +RFR
Sbjct: 137 --------------------------AAAAK------AKQWQYPHGLTPPMKSARKKRFR 164
>Hs13376333 [K] KOG4011 Transcription initiation factor TFIID subunit TAF7
Length = 302
Score = 63.2 bits (152), Expect = 1e-09
Identities = 60/187 (32%), Positives = 84/187 (44%), Gaps = 48/187 (25%)
Query: 159 SEASDVEDDPLIEEGIILRVLPDLSAEFVKN-----SIESGDYSDVSIKWKGERHAVVKV 213
SE+ D D +E ILR LP A V+N S++ D + + G RHAVV+V
Sbjct: 2 SESQDEVPDE-VENQFILR-LPLEHACTVRNLARSQSVKMKDKLKIDLLPDG-RHAVVEV 58
Query: 214 NGVQYGAVLVNLPSIIEVNKSVDRKNLLKTFDVSQMLICVRT----VNKEEEVFSLQVSD 269
V A LV+LP +IE +++D+K KT D+SQML+C ++ EE S +D
Sbjct: 59 EDVPLAAKLVDLPCVIESLRTLDKKTFYKTADISQMLVCTADGDIHLSPEEPAAS---TD 115
Query: 270 TEDLTKKHFEEYQKEITEQRKQQLRGYNGGPLTDAESKNIEQIINKRYDYKHGITPPLYN 329
+ KK +K + +KHGITPPL N
Sbjct: 116 PNIVRKKERGREEKCV---------------------------------WKHGITPPLKN 142
Query: 330 ARNRRFR 336
R +RFR
Sbjct: 143 VRKKRFR 149
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.309 0.130 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,169,639
Number of Sequences: 60738
Number of extensions: 1048013
Number of successful extensions: 2374
Number of sequences better than 1.0e-05: 6
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2359
Number of HSP's gapped (non-prelim): 13
length of query: 735
length of database: 30,389,216
effective HSP length: 114
effective length of query: 621
effective length of database: 23,465,084
effective search space: 14571817164
effective search space used: 14571817164
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)