ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII2126 good E KOG0795 Amino acid transport and metabolism Chorismate mutase
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII2126 752482 753261 260
(260 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YPR060c [E] KOG0795 Chorismate mutase 392 e-109
SPAC16E8.04c [E] KOG0795 Chorismate mutase 196 3e-50
At3g29200 [E] KOG0795 Chorismate mutase 184 1e-46
At1g69370 [E] KOG0795 Chorismate mutase 182 4e-46
At5g10870 [E] KOG0795 Chorismate mutase 159 5e-39
>YPR060c [E] KOG0795 Chorismate mutase
Length = 256
Score = 392 bits (1008), Expect = e-109
Identities = 193/256 (75%), Positives = 223/256 (86%)
Query: 1 MDFFKPETVLDLQNIRDELVKMEDTIIFNFIERSHFATCSSVYESNVPEIKLPDFDGSFL 60
MDF KPETVL+LQNIRDELV+MED+IIF FIERSHFATC SVYE+N P +++P+F GSFL
Sbjct: 1 MDFTKPETVLNLQNIRDELVRMEDSIIFKFIERSHFATCPSVYEANHPGLEIPNFKGSFL 60
Query: 61 DWALMKMEIVHSQLRRFESPDETPFFPDKILKPIIPSLNYPKILASYANQINYNDKIKSI 120
DWAL +EI HS++RRFESPDETPFFPDKI K +PS+NYP+ILA YA ++NYNDKIK +
Sbjct: 61 DWALSNLEIAHSRIRRFESPDETPFFPDKIQKSFLPSINYPQILAPYAPEVNYNDKIKKV 120
Query: 121 YIKTIVPLLSKRDINTWENFGSVATRDIEALQSLSRRIHFGKFVAEAKFQSEKEKFTKLI 180
YI+ I+PL+SKRD + NFGSVATRDIE LQSLSRRIHFGKFVAEAKFQS+ +TKLI
Sbjct: 121 YIEKIIPLISKRDGDDKNNFGSVATRDIECLQSLSRRIHFGKFVAEAKFQSDIPLYTKLI 180
Query: 181 LDQDVDGIMTAITNSKVEEKILQRLNVKATVYGVDPTNEKGDRKITPEYLVKIYKEIVIP 240
+DV+GIM ITNS VEEKIL+RL KA VYGVDPTNE G+R+ITPEYLVKIYKEIVIP
Sbjct: 181 KSKDVEGIMKNITNSAVEEKILERLTKKAEVYGVDPTNESGERRITPEYLVKIYKEIVIP 240
Query: 241 ITKEVEVDYLLRRLED 256
ITKEVEV+YLLRRLE+
Sbjct: 241 ITKEVEVEYLLRRLEE 256
>SPAC16E8.04c [E] KOG0795 Chorismate mutase
Length = 251
Score = 196 bits (498), Expect = 3e-50
Identities = 114/249 (45%), Positives = 161/249 (63%), Gaps = 10/249 (4%)
Query: 10 LDLQNIRDELVKMEDTIIFNFIERSHFATCSSVYESNVPE-IKLPDFDGSFLDWALMKME 68
L L+NIR L++ EDTIIFNF+ER+ F VY+S + L ++DGSFL++ L + E
Sbjct: 8 LKLENIRSALIRQEDTIIFNFLERAQFPRNEKVYKSGKEGCLNLENYDGSFLNYLLHEEE 67
Query: 69 IVHSQLRRFESPDETPFFPDKILKPIIPSLNYPKILASYANQINYNDKIKSIYIKTIVPL 128
V++ +RR+ SP+E PF D + +PI+P + L + N +N N +I YI IVP
Sbjct: 68 KVYALVRRYASPEEYPF-TDNLPEPILPKFSGKFPL--HPNNVNVNSEILEYYINEIVPK 124
Query: 129 LSKRDINTWENFGSVATRDIEALQSLSRRIHFGKFVAEAKFQSEKEKFTKLILDQDVDGI 188
+S + ++N+GS DI LQSLSRRIH+GKFVAEAK+ + EK+ KLIL +D+ GI
Sbjct: 125 ISSPG-DDFDNYGSTVVCDIRCLQSLSRRIHYGKFVAEAKYLANPEKYKKLILARDIKGI 183
Query: 189 MTAITNSKVEEKILQRLNVKATVYG---VDPTNEKGDRKITPEYLVKIYKEIVIPITKEV 245
I ++ EE++L+RL+ KA YG DPT K +I + + IYK+ VIP+TK+V
Sbjct: 184 ENEIVDAAQEERVLKRLHYKALNYGRDAADPT--KPSDRINADCVASIYKDYVIPMTKKV 241
Query: 246 EVDYLLRRL 254
EVDYLL RL
Sbjct: 242 EVDYLLARL 250
>At3g29200 [E] KOG0795 Chorismate mutase
Length = 334
Score = 184 bits (467), Expect = 1e-46
Identities = 101/259 (38%), Positives = 156/259 (59%), Gaps = 17/259 (6%)
Query: 10 LDLQNIRDELVKMEDTIIFNFIERSHFATCSSVYESNVPEIKLPDFDGSFLDWALMKMEI 69
L L+ IR+ L++ ED+IIF +ER+ + + Y+ + F+GS +++ + E
Sbjct: 80 LTLEGIRNSLIRQEDSIIFGLLERAKYCYNADTYDPTA--FDMDGFNGSLVEYMVKGTEK 137
Query: 70 VHSQLRRFESPDETPFFPDKILKPIIPSLNYPKILASYANQINYNDKIKSIYIKTIVPLL 129
+H+++ RF+SPDE PFFPD + +P++P L YPK+L A+ IN N KI ++Y + +VP L
Sbjct: 138 LHAKVGRFKSPDEHPFFPDDLPEPMLPPLQYPKVLHFAADSININKKIWNMYFRDLVPRL 197
Query: 130 SKRDINTWENFGSVATRDIEALQSLSRRIHFGKFVAEAKFQSEKEKFTKLILDQDVDGIM 189
K+ + N+GS A D LQ LS+RIH+GKFVAEAKFQ+ E + I QD D +M
Sbjct: 198 VKKGDD--GNYGSTAVCDAICLQCLSKRIHYGKFVAEAKFQASPEAYESAIKAQDKDALM 255
Query: 190 TAITNSKVEEKILQRLNVKATVYG-------------VDPTNEKGDRKITPEYLVKIYKE 236
+T VE+ I +R+ +K YG + NE KI+P + +Y +
Sbjct: 256 DMLTFPTVEDAIKKRVEMKTRTYGQEVKVGMEEKEEEEEEGNESHVYKISPILVGDLYGD 315
Query: 237 IVIPITKEVEVDYLLRRLE 255
++P+TKEV+V+YLLRRL+
Sbjct: 316 WIMPLTKEVQVEYLLRRLD 334
>At1g69370 [E] KOG0795 Chorismate mutase
Length = 316
Score = 182 bits (462), Expect = 4e-46
Identities = 97/252 (38%), Positives = 153/252 (60%), Gaps = 10/252 (3%)
Query: 10 LDLQNIRDELVKMEDTIIFNFIERSHFATCSSVYESNVPEIKLPDFDGSFLDWALMKMEI 69
L L++IR L++ ED+IIFN +ER+ + + Y+ + + F GS +++ + + E
Sbjct: 69 LKLESIRHSLIRQEDSIIFNLLERAQYRYNADTYDEDA--FTMEGFQGSLVEFMVRETEK 126
Query: 70 VHSQLRRFESPDETPFFPDKILKPIIPSLNYPKILASYANQINYNDKIKSIYIKTIVPLL 129
+H+++ R++SPDE PFFP + +PI+P + YP++L A IN N K+ ++Y K ++P L
Sbjct: 127 LHAKVDRYKSPDEHPFFPQCLPEPILPPIQYPQVLHRCAESININKKVWNMYFKHLLPRL 186
Query: 130 SKRDINTWENFGSVATRDIEALQSLSRRIHFGKFVAEAKFQSEKEKFTKLILDQDVDGIM 189
K + N GS A D LQ LS+RIHFGKFVAEAKF+ + I +QD +M
Sbjct: 187 VKPGDDG--NCGSAALCDTMCLQILSKRIHFGKFVAEAKFRENPAAYETAIKEQDRTQLM 244
Query: 190 TAITNSKVEEKILQRLNVKATVYGVD------PTNEKGDRKITPEYLVKIYKEIVIPITK 243
+T VEE + +R+ +KA ++G D T KI P + K+Y E ++P+TK
Sbjct: 245 QLLTYETVEEVVKKRVEIKARIFGQDITINDPETEADPSYKIQPSLVAKLYGERIMPLTK 304
Query: 244 EVEVDYLLRRLE 255
EV+++YLLRRL+
Sbjct: 305 EVQIEYLLRRLD 316
>At5g10870 [E] KOG0795 Chorismate mutase
Length = 265
Score = 159 bits (401), Expect = 5e-39
Identities = 98/257 (38%), Positives = 145/257 (56%), Gaps = 17/257 (6%)
Query: 9 VLDLQNIRDELVKMEDTIIFNFIERSHFATCSSVYESNVPEIKLPDFDGSF---LDWALM 65
VL L IR+ L++ EDTI+F+ IER+ F S +E E + D GSF ++ +
Sbjct: 16 VLSLDLIRESLIRQEDTIVFSLIERAKFPLNSPAFE----ESRCLD-SGSFSSLTEFFVR 70
Query: 66 KMEIVHSQLRRFESPDETPFFPDKILKPIIPSLNYPKILASYANQINYNDKIKSIYIKTI 125
+ EI+ +++ R+E P+E PFF + I + P+ YP L A +N N +I IY K +
Sbjct: 71 ETEIIQAKVGRYEYPEENPFFLENIPHSVFPTHKYPSALHPKALSVNINKQIWDIYFKEL 130
Query: 126 VPLLSKRDINTWENFGSVATRDIEALQSLSRRIHFGKFVAEAKFQSEKEKFTKLILDQDV 185
+PL K + N+ S A D+ LQ+LSRRIH+GKFVAE KF+ + + I QD
Sbjct: 131 LPLFVKPGDDG--NYPSTAASDLACLQALSRRIHYGKFVAEVKFRDAPQDYEPAIRAQDR 188
Query: 186 DGIMTAITNSKVEEKILQRLNVKATVYGVD-------PTNEKGDRKITPEYLVKIYKEIV 238
+ +M +T KVEE + +R+ KA +G + K K+ P +IY E +
Sbjct: 189 EALMKLLTFEKVEEMVKKRVQKKAETFGQEVKFNSGYGDESKKKYKVDPLLASRIYGEWL 248
Query: 239 IPITKEVEVDYLLRRLE 255
IP+TK VEV+YLLRRL+
Sbjct: 249 IPLTKLVEVEYLLRRLD 265
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.319 0.138 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,675,528
Number of Sequences: 60738
Number of extensions: 681112
Number of successful extensions: 1812
Number of sequences better than 1.0e-05: 5
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1793
Number of HSP's gapped (non-prelim): 5
length of query: 260
length of database: 30,389,216
effective HSP length: 104
effective length of query: 156
effective length of database: 24,072,464
effective search space: 3755304384
effective search space used: 3755304384
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)