ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII2137 suspect: LH U KOG4173 Intracellular trafficking, secretion, and vesicular transport Alpha-SNAP protein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII2137 756147 756509 121
(121 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores:
Score E
Sequences producing significant alignments: (bits) Value
Hs21956643 [U] KOG4173 Alpha-SNAP protein 59 1e-09
Hs17450771 [U] KOG4173 Alpha-SNAP protein 59 1e-09
>Hs21956643 [U] KOG4173 Alpha-SNAP protein
Length = 262
Score = 58.5 bits (140), Expect = 1e-09
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 20 AVLCSDPPCDHEWVPIELYPSHVSQMHENVCTQCLRNFASEYWMELHIEEFHNP----FK 75
A C C + ++ Y H +H NVC+ C R F S + ++ HI E+H+
Sbjct: 79 AFACQVAGCCQVFDALDDYEHHYHTLHGNVCSFCKRAFPSGHLLDAHILEWHDSLFQILS 138
Query: 76 NGNYRLRCLEQDCSMTFSNSNERIDHLKRHHYYSDQFDFD 115
+CL + C+ F S +R DH+ R H Y F FD
Sbjct: 139 ERQDMYQCLVEGCTEKFKTSRDRKDHMVRMHLYPADFRFD 178
>Hs17450771 [U] KOG4173 Alpha-SNAP protein
Length = 252
Score = 58.5 bits (140), Expect = 1e-09
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 20 AVLCSDPPCDHEWVPIELYPSHVSQMHENVCTQCLRNFASEYWMELHIEEFHNP----FK 75
A C C + ++ Y H +H NVC+ C R F S + ++ HI E+H+
Sbjct: 79 AFACQVAGCCQVFDALDDYEHHYHTLHGNVCSFCKRAFPSGHLLDAHILEWHDSLFQILS 138
Query: 76 NGNYRLRCLEQDCSMTFSNSNERIDHLKRHHYYSDQFDFD 115
+CL + C+ F S +R DH+ R H Y F FD
Sbjct: 139 ERQDMYQCLVEGCTEKFKTSRDRKDHMVRMHLYPADFRFD 178
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.321 0.136 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,067,188
Number of Sequences: 60738
Number of extensions: 384686
Number of successful extensions: 1595
Number of sequences better than 1.0e-05: 2
Number of HSP's better than 0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1593
Number of HSP's gapped (non-prelim): 2
length of query: 121
length of database: 30,389,216
effective HSP length: 97
effective length of query: 24
effective length of database: 24,497,630
effective search space: 587943120
effective search space used: 587943120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)