ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII2237 check: MH R KOG0118 General function prediction only FOG: RRM domain
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII2237 787039 786125 -305
(305 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YBR119w [R] KOG0118 FOG: RRM domain 125 6e-29
Hs4507123 [A] KOG4206 Spliceosomal protein snRNP-U1A/U2B 57 4e-08
Hs4759156 [A] KOG4206 Spliceosomal protein snRNP-U1A/U2B 55 1e-07
SPBC4B4.07c [A] KOG4206 Spliceosomal protein snRNP-U1A/U2B 49 9e-06
>YBR119w [R] KOG0118 FOG: RRM domain
Length = 298
Score = 125 bits (315), Expect = 6e-29
Identities = 94/306 (30%), Positives = 149/306 (47%), Gaps = 22/306 (7%)
Query: 13 VSTLYLSNLPSRPDSLSKFRALLLSSVNSDHRSISNDVSTRFDLNSKKETSEADAVTPVL 72
+S LY NLPSRP + + LLL +N +++ N S N + +S+ +L
Sbjct: 1 MSALYFQNLPSRPANKENYTRLLLKHINPNNKYAINP-SLPLPHNKLQISSQP---LMLL 56
Query: 73 DEKYQIIEVSRYGSRPLRRSCFVTFKDSDSCNTFLIEFQGK-LKINGRKINIKLANTDSF 131
D++ ++EVS S + F+TF + + FL ++ LK+ GRK+ + A T+S
Sbjct: 57 DDQMGLLEVSISRSSKMTNQAFLTFVTQEEADRFLEKYTTTALKVQGRKVRMGKARTNSL 116
Query: 132 AALYYQGQQKQLQDELR-------LRTRK------AVDNSQPKTKTKNEVXXXXXXXXXX 178
L + Q+K+ DE L+ RK + D K + K ++
Sbjct: 117 LGLSIEMQKKKGNDETYNLDIKKVLKARKLKRKLRSDDICAKKFRLKRQIRRLKHKLRSR 176
Query: 179 XXXXXXXDEETIQKLLSKPRKTNPEGTNKTAMSQQSEKVSSTKKVFDIVGNPPHHVLLVQ 238
D I K R N + + +QS+K KV + + NPP+ VLL+Q
Sbjct: 177 KVEEAEIDR--IVKEFETRRLENMKSQQENL--KQSQKPLKRAKVSNTMENPPNKVLLIQ 232
Query: 239 NLPKDVTQQELEKLFVSDGFKEVRLVSVRNLCFVEYDSTANATKVVETLGHDHPFKNVTI 298
NLP T+Q L ++ ++ E+RLVSVRNL FVEY++ A+ATK+ LG + +N +
Sbjct: 233 NLPSGTTEQLLSQILGNEALVEIRLVSVRNLAFVEYETVADATKIKNQLGSTYKLQNNDV 292
Query: 299 KIGYAK 304
IG+AK
Sbjct: 293 TIGFAK 298
>Hs4507123 [A] KOG4206 Spliceosomal protein snRNP-U1A/U2B
Length = 225
Score = 56.6 bits (135), Expect = 4e-08
Identities = 57/230 (24%), Positives = 90/230 (38%), Gaps = 43/230 (18%)
Query: 78 IIEVSRYGSRPLRRSCFVTFKDSDSCNTFLIEFQGKLKINGRKINIKLANTDSFAALYYQ 137
++++ + +R FV FK+ S L + QG G+ + I+ A TDS
Sbjct: 37 VVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQG-FPFYGKPMRIQYAKTDS------- 88
Query: 138 GQQKQLQDELRLRTRKAVDNSQPKTKTKNEVXXXXXXXXXXXXXXXXXDEETIQKLLSKP 197
D + D + K K K + E+T KP
Sbjct: 89 -------DIISKMRGTFADKEKKKEKKKAKTV-----------------EQTATTTNKKP 124
Query: 198 RKTNPEGTNKTAMSQQSEKVSSTKKVFDIVGNPPHHVLLVQNLPKDVTQQELEKLFVS-D 256
+ P N S + +V PP+++L + NLP++ + L LF
Sbjct: 125 GQGTPNSANTQGNSTPNPQVPDY---------PPNYILFLNNLPEETNEMMLSMLFNQFP 175
Query: 257 GFKEVRLVSVR-NLCFVEYDSTANATKVVETLGHDHPFKNVTIKIGYAKK 305
GFKEVRLV R ++ FVE+++ A + L + +KI YAKK
Sbjct: 176 GFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>Hs4759156 [A] KOG4206 Spliceosomal protein snRNP-U1A/U2B
Length = 282
Score = 55.5 bits (132), Expect = 1e-07
Identities = 66/270 (24%), Positives = 104/270 (38%), Gaps = 22/270 (8%)
Query: 55 DLNSKKETSEAD-AVTPVLDEKYQIIEVSRYGSRPLRRSCFVTFKDSDSCNTFLIEFQGK 113
+LN K + E ++ + + QI+++ S +R FV FK+ S L QG
Sbjct: 16 NLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQG- 74
Query: 114 LKINGRKINIKLANTDSFAALYYQGQQKQLQDELRLRTRKAVDNSQPKTKTKNEVXXXXX 173
+ + I+ A TDS +G ++ + + RK P TK +
Sbjct: 75 FPFYDKPMRIQYAKTDSDIIAKMKGTF--VERDRKREKRKPKSQETPATKKAVQGGGATP 132
Query: 174 XXXXXXXXXXXXDEET-----IQKLLSKPRKTNPEGTNKT-----------AMSQQSEKV 217
T + + +P P G AM Q
Sbjct: 133 VVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMP 192
Query: 218 SSTKKVFDIVGNPPHHVLLVQNLPKDVTQQELEKLFVS-DGFKEVRLVSVR-NLCFVEYD 275
+ NPP+H+L + NLP++ + L LF GFKEVRLV R ++ FVE+D
Sbjct: 193 GQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFD 252
Query: 276 STANATKVVETLGHDHPFKNVTIKIGYAKK 305
+ A + L +N +KI +AKK
Sbjct: 253 NEVQAGAARDALQGFKITQNNAMKISFAKK 282
>SPBC4B4.07c [A] KOG4206 Spliceosomal protein snRNP-U1A/U2B
Length = 249
Score = 48.9 bits (115), Expect = 9e-06
Identities = 31/78 (39%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 230 PPHHVLLVQNLPKDVTQQELEKLFVS-DGFKEVRLV-SVRNLCFVEYDSTANATKVVETL 287
PP+ VLL+QN+P++V L ++F + GF+EVR+V R + FVEYDS AT V +
Sbjct: 171 PPNKVLLLQNIPQEVNADVLTQIFEAFSGFQEVRMVPGRRGIAFVEYDSDREAT-VAKNG 229
Query: 288 GHDHPFKNVTIKIGYAKK 305
IK+ +A+K
Sbjct: 230 TTGMSLSGNQIKVTFARK 247
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.314 0.130 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,937,357
Number of Sequences: 60738
Number of extensions: 611345
Number of successful extensions: 1705
Number of sequences better than 1.0e-05: 4
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1697
Number of HSP's gapped (non-prelim): 6
length of query: 305
length of database: 30,389,216
effective HSP length: 106
effective length of query: 199
effective length of database: 23,950,988
effective search space: 4766246612
effective search space used: 4766246612
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)