ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII2310 check: MH L KOG1002 Replication, recombination and repair Nucleotide excision repair protein RAD16
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII2310 812580 810181 -800
(800 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YBR114w [L] KOG1002 Nucleotide excision repair protein RAD16 1109 0.0
SPCC330.01c [L] KOG1002 Nucleotide excision repair protein RAD16 820 0.0
At1g05120 [L] KOG1002 Nucleotide excision repair protein RAD16 429 e-120
At1g02670 [L] KOG1002 Nucleotide excision repair protein RAD16 343 5e-94
At5g43530 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 328 3e-89
At5g22750 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 305 2e-82
SPBC23E6.02 [KL] KOG1001 Helicase-like transcription factor HLTF... 300 4e-81
SPBC582.10c [KL] KOG1001 Helicase-like transcription factor HLTF... 299 1e-80
SPAC17A2.12 [KL] KOG1001 Helicase-like transcription factor HLTF... 298 2e-80
At3g20010 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 289 1e-77
At1g50410 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 283 6e-76
At1g11100 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 282 2e-75
At1g61140 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 280 8e-75
Hs21071052 [KL] KOG1001 Helicase-like transcription factor HLTF/... 271 4e-72
At5g05130 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 259 9e-69
YOR191w [KL] KOG1001 Helicase-like transcription factor HLTF/DNA... 259 1e-68
YLR032w [KL] KOG1001 Helicase-like transcription factor HLTF/DNA... 258 2e-68
Hs19923174 [KL] KOG4439 RNA polymerase II transcription terminat... 248 2e-65
At3g16600 [KL] KOG1001 Helicase-like transcription factor HLTF/D... 222 2e-57
7298963 [KL] KOG4439 RNA polymerase II transcription termination... 200 6e-51
YFR038w [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small... 174 6e-43
YPL082c [K] KOG0392 SNF2 family DNA-dependent ATPase domain-cont... 171 4e-42
SPAC25A8.01c [B] KOG0389 SNF2 family DNA-dependent ATPase 171 5e-42
SPAC20G8.08c [B] KOG0389 SNF2 family DNA-dependent ATPase 161 3e-39
At2g02090 [B] KOG0389 SNF2 family DNA-dependent ATPase 160 5e-39
Hs21914927 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 155 2e-37
YAL019w [B] KOG0389 SNF2 family DNA-dependent ATPase 155 3e-37
ECU09g0410 [KL] KOG0387 Transcription-coupled repair protein CSB... 155 3e-37
SPBC1826.01c [K] KOG0392 SNF2 family DNA-dependent ATPase domain... 150 1e-35
At3g54280 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-co... 149 2e-35
CE16277 [B] KOG0389 SNF2 family DNA-dependent ATPase 148 3e-35
Hs14149730 [B] KOG0389 SNF2 family DNA-dependent ATPase 147 5e-35
ECU01g0350 [K] KOG0384 Chromodomain-helicase DNA-binding protein 145 3e-34
Hs22047300 [K] KOG0384 Chromodomain-helicase DNA-binding protein 134 7e-31
Hs22047966 [K] KOG0384 Chromodomain-helicase DNA-binding protein 131 4e-30
CE11083 [KL] KOG4439 RNA polymerase II transcription termination... 131 4e-30
CE14110 [KL] KOG4439 RNA polymerase II transcription termination... 130 6e-30
CE18196 [K] KOG0384 Chromodomain-helicase DNA-binding protein 128 4e-29
YER164w [K] KOG0384 Chromodomain-helicase DNA-binding protein 124 7e-28
Hs21362042 [K] KOG0384 Chromodomain-helicase DNA-binding protein 123 1e-27
7301343 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box su... 119 2e-26
At1g08600 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box ... 114 6e-25
CE15856 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-cont... 112 2e-24
CE23294 [KL] KOG4439 RNA polymerase II transcription termination... 109 2e-23
YDR334w [R] KOG0391 SNF2 family DNA-dependent ATPase 103 8e-22
At3g06400 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sma... 103 1e-21
At5g18620 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sma... 102 2e-21
7296236 [K] KOG0384 Chromodomain-helicase DNA-binding protein 102 2e-21
At5g66750 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sma... 102 3e-21
ECU10g1320 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 101 5e-21
ECU09g1890 [L] KOG0388 SNF2 family DNA-dependent ATPase 100 9e-21
7298962 [KL] KOG4439 RNA polymerase II transcription termination... 100 9e-21
YGL150c [L] KOG0388 SNF2 family DNA-dependent ATPase 100 1e-20
SPAC144.05 [L] KOG0298 DEAD box-containing helicase-like transcr... 100 1e-20
Hs5730067 [R] KOG0391 SNF2 family DNA-dependent ATPase 100 1e-20
CE00789 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small... 100 1e-20
At5g19310 [BK] KOG0386 Chromatin remodeling complex SWI/SNF comp... 100 1e-20
At3g06010 [BK] KOG0386 Chromatin remodeling complex SWI/SNF comp... 99 2e-20
YBR245c [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small... 99 3e-20
CE27114 [BK] KOG0386 Chromatin remodeling complex SWI/SNF compon... 99 3e-20
Hs21071058 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 98 4e-20
YIL126w [BK] KOG0386 Chromatin remodeling complex SWI/SNF compon... 98 6e-20
Hs20536191 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 97 7e-20
7297570 [B] KOG0389 SNF2 family DNA-dependent ATPase 97 1e-19
CE11450 [KL] KOG4439 RNA polymerase II transcription termination... 97 1e-19
CE25717 [R] KOG0391 SNF2 family DNA-dependent ATPase 95 4e-19
7293795 [R] KOG0383 Predicted helicase 95 4e-19
SPAC13G6.01c [KL] KOG1001 Helicase-like transcription factor HLT... 95 5e-19
Hs4557453 [R] KOG0383 Predicted helicase 94 6e-19
7303422 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small... 94 6e-19
YOR304w [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small... 94 8e-19
CE05553 [BK] KOG0386 Chromatin remodeling complex SWI/SNF compon... 94 1e-18
CE11572 [K] KOG0384 Chromodomain-helicase DNA-binding protein 93 1e-18
At5g44800 [R] KOG0383 Predicted helicase 93 1e-18
At3g57300 [L] KOG0388 SNF2 family DNA-dependent ATPase 93 1e-18
CE17716 [R] KOG0383 Predicted helicase 93 2e-18
At2g46020 [BK] KOG0386 Chromatin remodeling complex SWI/SNF comp... 93 2e-18
Hs4557449 [K] KOG0384 Chromodomain-helicase DNA-binding protein 92 2e-18
HsM8922362 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 92 3e-18
Hs14767157 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 92 3e-18
At3g12810 [R] KOG0391 SNF2 family DNA-dependent ATPase 92 4e-18
At1g03750 [KL] KOG0387 Transcription-coupled repair protein CSB/... 92 4e-18
YBR073w [L] KOG0390 DNA repair protein SNF2 family 91 5e-18
Hs21071044 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 91 5e-18
Hs20533808 [R] KOG0383 Predicted helicase 91 5e-18
YOR290c [BK] KOG0386 Chromatin remodeling complex SWI/SNF compon... 91 9e-18
At2g13370 [K] KOG0384 Chromodomain-helicase DNA-binding protein 91 9e-18
7295868 [L] KOG0390 DNA repair protein SNF2 family 90 1e-17
Hs4557451 [R] KOG0383 Predicted helicase 90 2e-17
Hs4557447 [K] KOG0384 Chromodomain-helicase DNA-binding protein 90 2e-17
SPCC1235.05c [B] KOG0389 SNF2 family DNA-dependent ATPase 89 2e-17
Hs21071056 [BK] KOG0386 Chromatin remodeling complex SWI/SNF com... 89 2e-17
Hs21071050 [BK] KOG0386 Chromatin remodeling complex SWI/SNF com... 89 3e-17
Hs21071048 [BK] KOG0386 Chromatin remodeling complex SWI/SNF com... 89 3e-17
7294205 [BK] KOG0386 Chromatin remodeling complex SWI/SNF compon... 89 3e-17
SPAC3G6.12 [L] KOG0388 SNF2 family DNA-dependent ATPase 88 5e-17
SPAC1250.01 [BK] KOG0386 Chromatin remodeling complex SWI/SNF co... 88 5e-17
CE11028 [KL] KOG0387 Transcription-coupled repair protein CSB/RA... 88 6e-17
CE03657 [R] KOG0383 Predicted helicase 88 6e-17
SPAC1783.05 [K] KOG0384 Chromodomain-helicase DNA-binding protein 87 8e-17
Hs17454125 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-c... 87 1e-16
7300091 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-cont... 87 1e-16
YLR247c [L] KOG0298 DEAD box-containing helicase-like transcript... 86 2e-16
At2g25170 [R] KOG0383 Predicted helicase 86 2e-16
At2g40770 [L] KOG0298 DEAD box-containing helicase-like transcri... 86 3e-16
SPAC15A10.03c [L] KOG0390 DNA repair protein SNF2 family 85 4e-16
7295870 [K] KOG0384 Chromodomain-helicase DNA-binding protein 85 5e-16
At3g19210 [L] KOG0390 DNA repair protein SNF2 family 84 7e-16
YGL163c [L] KOG0390 DNA repair protein SNF2 family 84 1e-15
Hs21071046 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sm... 83 1e-15
7300511 [L] KOG0388 SNF2 family DNA-dependent ATPase 83 1e-15
SPAC3G6.01 [K] KOG0384 Chromodomain-helicase DNA-binding protein 83 2e-15
SPAC22F3.03c [L] KOG0390 DNA repair protein SNF2 family 83 2e-15
Hs4557565 [KL] KOG0387 Transcription-coupled repair protein CSB/... 83 2e-15
Hs13376715 [K] KOG0384 Chromodomain-helicase DNA-binding protein 82 2e-15
ECU03g1530 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-c... 82 3e-15
7295362 [L] KOG0298 DEAD box-containing helicase-like transcript... 82 3e-15
Hs6912622_2 [L] KOG0390 DNA repair protein SNF2 family 81 6e-15
SPBP35G2.10 [R] KOG0383 Predicted helicase 80 9e-15
CE26384 [L] KOG0298 DEAD box-containing helicase-like transcript... 80 9e-15
CE25143 [L] KOG0390 DNA repair protein SNF2 family 80 2e-14
Hs4506397 [L] KOG0390 DNA repair protein SNF2 family 79 2e-14
Hs20336209 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box... 79 2e-14
Hs20336207 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box... 79 2e-14
Hs20336205 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box... 79 2e-14
Hs22054523 [L] KOG0298 DEAD box-containing helicase-like transcr... 78 5e-14
At5g63950 [KL] KOG0387 Transcription-coupled repair protein CSB/... 77 8e-14
At2g28290 [BK] KOG0386 Chromatin remodeling complex SWI/SNF comp... 77 8e-14
CE23323 [L] KOG0390 DNA repair protein SNF2 family 77 1e-13
At2g44980 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sma... 77 1e-13
At4g31900 [R] KOG0383 Predicted helicase 75 3e-13
SPCP25A2.02c [KL] KOG0387 Transcription-coupled repair protein C... 74 7e-13
YJR035w [KL] KOG0387 Transcription-coupled repair protein CSB/RA... 72 3e-12
At2g18760 [KL] KOG0387 Transcription-coupled repair protein CSB/... 72 3e-12
Hs4757978 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI sma... 72 4e-12
Hs15805014 [R] KOG0391 SNF2 family DNA-dependent ATPase 70 1e-11
CE17314 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box su... 69 2e-11
At5g07810 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1... 65 3e-10
SPCC1620.14c [BK] KOG0386 Chromatin remodeling complex SWI/SNF c... 65 4e-10
Hs21071060 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL... 65 4e-10
ECU06g0820 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL... 65 4e-10
CE17477 [R] KOG1016 Predicted DNA helicase DEAD-box superfamily 65 4e-10
HsM14149926 [K] KOG0384 Chromodomain-helicase DNA-binding protein 65 5e-10
At1g48310 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1... 64 9e-10
7296909 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 D... 62 3e-09
Hs20532976 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL... 62 3e-09
At1g05480 [L] KOG0390 DNA repair protein SNF2 family 61 6e-09
Hs20538502 [R] KOG1016 Predicted DNA helicase DEAD-box superfamily 61 8e-09
7293730 [R] KOG0383 Predicted helicase 60 1e-08
At2g21450 [L] KOG0390 DNA repair protein SNF2 family 60 1e-08
At3g24340 [L] KOG0390 DNA repair protein SNF2 family 59 2e-08
Hs17437081 [B] KOG0389 SNF2 family DNA-dependent ATPase 59 3e-08
7291744 [R] KOG1016 Predicted DNA helicase DEAD-box superfamily 59 4e-08
CE18078 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA... 55 3e-07
At2g16390 [L] KOG0390 DNA repair protein SNF2 family 51 6e-06
CE27689 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 D... 51 8e-06
CE27688 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 D... 51 8e-06
>YBR114w [L] KOG1002 Nucleotide excision repair protein RAD16
Length = 790
Score = 1109 bits (2868), Expect = 0.0
Identities = 560/805 (69%), Positives = 645/805 (79%), Gaps = 22/805 (2%)
Query: 3 MEEGGFIRRTRQSGNRTRTAKKNVVYIESSSGESEDEPLVKKEIXXXXXXXXXXXXXXXX 62
M+EGGFIRR RTR+ KK+V Y E S +D+ VK
Sbjct: 1 MQEGGFIRR-----RRTRSTKKSVNYNELS----DDDTAVKNSKTLQLKGNSENVNDSQD 51
Query: 63 XXXXXXANRNLDSDLEYDDSLVLL--SDQTDRSGDESSDELKRE--QVVELISS---SDD 115
A D + D ++ L SD+ + DE++ +K + +++E+ SDD
Sbjct: 52 EEYRDDATLVKSPDDDDKDFIIDLTGSDKERTATDENTHAIKNDNDEIIEIKEERDVSDD 111
Query: 116 DEPLQNGPQXXXXXXXXXXXXXXXXXXXXXXXXISPFERNTAKLYAHHSELIDVFKKLQE 175
DEPL + ++P+ERNT +LY HH EL +VF L+
Sbjct: 112 DEPLTKKRKTTARKKKKKTSTKKKSPK------VTPYERNTLRLYEHHPELRNVFTDLKN 165
Query: 176 SPIRQVERAPQPDGMAIRLLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLM 235
+P +R+ QPDGM I+LLPFQLEGLHWL QEES Y GGVLADEMGMGKTIQTIALLM
Sbjct: 166 APPYVPQRSKQPDGMTIKLLPFQLEGLHWLISQEESIYAGGVLADEMGMGKTIQTIALLM 225
Query: 236 SDITRKPSLVVAPTVALMQWKNEIEQHTNKKLSVYMYHGANRTNNLGDFKDVDVILTTYA 295
+D+T+ PSLVVAPTVALMQWKNEIEQHT +L +Y+YHGA+RT ++ D + DV+LTTYA
Sbjct: 226 NDLTKSPSLVVAPTVALMQWKNEIEQHTKGQLKIYIYHGASRTTDIKDLQGYDVVLTTYA 285
Query: 296 VLESVYRKQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKK 355
VLESV+RKQ YGF+RK G K+ S+LH+I+FYRVILDEAHNIKDR SNTA+AVN+L+T+K
Sbjct: 286 VLESVFRKQNYGFRRKNGLFKQPSVLHNIDFYRVILDEAHNIKDRQSNTARAVNNLKTQK 345
Query: 356 RWCLSGTPLQNRIGEMYSLIRFLNIEPFTRYYCKQCSCSSENWRFSDYLHCDDCGHVGMQ 415
RWCLSGTPLQNRIGEMYSLIRFLNI PFT+Y+C +C C+S++W+F+D +HCD C HV MQ
Sbjct: 346 RWCLSGTPLQNRIGEMYSLIRFLNINPFTKYFCTKCDCASKDWKFTDRMHCDHCSHVIMQ 405
Query: 416 HTNFFNHFMLKNVQKHGIEGPGLQSFQNIQTLLARIMLRRTKVERADDLGLPPRIVTVRK 475
HTNFFNHFMLKN+QK G+EGPGL+SF NIQTLL IMLRRTKVERADDLGLPPRIVTVR+
Sbjct: 406 HTNFFNHFMLKNIQKFGVEGPGLESFNNIQTLLKNIMLRRTKVERADDLGLPPRIVTVRR 465
Query: 476 DYFNEEEKDLYQSLYSDIKRKYNSYVEEGVVLNNYANIFTLITRMRQMADHPDLVLKRLK 535
D+FNEEEKDLY+SLY+D KRKYNS+VEEGVVLNNYANIFTLITRMRQ+ADHPDLVLKRL
Sbjct: 466 DFFNEEEKDLYRSLYTDSKRKYNSFVEEGVVLNNYANIFTLITRMRQLADHPDLVLKRLN 525
Query: 536 GNNDNNPGVIICQLCDDEAEEPIESKCHHRFCRLCINEYIDSFMADEKKLTCPVCHIGLS 595
++ GV+ICQLC+DEAEEPIESKCHH+FCRLCI EY++SFM + KLTCPVCHIGLS
Sbjct: 526 NFPGDDIGVVICQLCNDEAEEPIESKCHHKFCRLCIKEYVESFMENNNKLTCPVCHIGLS 585
Query: 596 IDLQQQALEVDEELFKKQSIVSRLKMGGKWRSSTKIEALVEELYNLRSDKRTIKSIVFSQ 655
IDL Q ALEVD + FKKQSIVSRL M GKW+SSTKIEALVEELY LRS+KRTIKSIVFSQ
Sbjct: 586 IDLSQPALEVDLDSFKKQSIVSRLNMSGKWQSSTKIEALVEELYKLRSNKRTIKSIVFSQ 645
Query: 656 FTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQTIKYFMENIHCEVFLVSLKAGGVALNL 715
FTSMLDLVEWRLKRAGFQTVKLQGSM+PTQRD+TIKYFM NI CEVFLVSLKAGGVALNL
Sbjct: 646 FTSMLDLVEWRLKRAGFQTVKLQGSMSPTQRDETIKYFMNNIQCEVFLVSLKAGGVALNL 705
Query: 716 CEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRIIELQEKKASMI 775
CEASQVFILDPWWNPSVEWQSGDRVHRIGQ+RPVKITRFCIEDSIE+RIIELQEKKA+MI
Sbjct: 706 CEASQVFILDPWWNPSVEWQSGDRVHRIGQYRPVKITRFCIEDSIEARIIELQEKKANMI 765
Query: 776 HATINQDEAAINRLTPADLQFLFNN 800
HATINQDEAAI+RLTPADLQFLFNN
Sbjct: 766 HATINQDEAAISRLTPADLQFLFNN 790
>SPCC330.01c [L] KOG1002 Nucleotide excision repair protein RAD16
Length = 963
Score = 820 bits (2117), Expect = 0.0
Identities = 416/730 (56%), Positives = 524/730 (70%), Gaps = 5/730 (0%)
Query: 74 DSDLEYDDSLVLLSDQTDRSGDESSD-ELKREQVVELISSSDDDEPLQNGPQXXXXXXXX 132
+S+ DD ++ D DE+ D +++ + S+ D+E + Q
Sbjct: 236 ESEFIDDDESDEVASIIDIKEDETFDSKVEIPEAAPSSSTESDEESIPLSYQSKRRRVSA 295
Query: 133 XXXXXXXXXXXXXXXXISPFERNTAKLYAHHSELIDVFKKLQESPIRQVERAPQPDGMAI 192
I ER +L H EL V++KL+E R+V++ QP + +
Sbjct: 296 RASSSASSSSRTQAKSIPSHERTHYRLIRQHPELEHVWEKLEEEAPREVKQIEQPKELVL 355
Query: 193 RLLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLMSDITRKPSLVVAPTVAL 252
LLPFQ EG++WL++QE+S + GG+LADEMGMGKTIQTIALL+S+ KP+LVVAP VA+
Sbjct: 356 NLLPFQREGVYWLKRQEDSSFGGGILADEMGMGKTIQTIALLLSEPRGKPTLVVAPVVAI 415
Query: 253 MQWKNEIEQHTNKKLSVYMYHGANRTNNLGDFKDVDVILTTYAVLESVYRKQVYGFKRKA 312
MQWK EI+ HTNK LS Y+Y+G R + + DV+LT+Y V+ESVYRK+ GF+RK
Sbjct: 416 MQWKEEIDTHTNKALSTYLYYGQARDISGEELSSYDVVLTSYNVIESVYRKERSGFRRKN 475
Query: 313 GTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGTPLQNRIGEMY 372
G VKEKSLLH + FYR+ILDEAH IK RT NTA+AV L+T ++ CLSGTPLQNRIGE++
Sbjct: 476 GVVKEKSLLHQMEFYRIILDEAHGIKSRTCNTARAVCGLRTTRKICLSGTPLQNRIGELF 535
Query: 373 SLIRFLNIEPFTRYYCKQCSCSSENWRFSDYLHCDDCGHVGMQHTNFFNHFMLKNVQKHG 432
SL+RFL +PF YYC QC C S +WRFSD +CD+CGH M HT +FN MLK +QK G
Sbjct: 536 SLLRFLRADPFAYYYCLQCECKSLHWRFSDRSNCDECGHKPMSHTCYFNAEMLKPIQKFG 595
Query: 433 IEGPGLQSFQNIQTLLARIMLRRTKVERADDLGLPPRIVTVRKDYFNEEEKDLYQSLYSD 492
EGPG +F+ + +LL IMLRRTK+ERADDLGLPPR+V VRKD FNEEE+D+YQSLY D
Sbjct: 596 YEGPGKLAFKKVHSLLKHIMLRRTKLERADDLGLPPRVVEVRKDLFNEEEEDVYQSLYMD 655
Query: 493 IKRKYNSYVEEGVVLNNYANIFTLITRMRQMADHPDLVLKRLKGNND-NNPGVIICQLCD 551
KRK+N+Y+ EGVVLNNYANIF LITRMRQMADHPDLVL + D N I+C++CD
Sbjct: 656 SKRKFNTYLAEGVVLNNYANIFQLITRMRQMADHPDLVLASKRKTVDIENQENIVCKICD 715
Query: 552 DEAEEPIESKCHHRFCRLCINEYIDSFMADEKKLTCPVCHIGLSIDLQQQALE-VDEELF 610
+ A++ IES+CHH FCRLC+ EYI++ D + + CP C I LSIDL ALE EE F
Sbjct: 716 EVAQDAIESRCHHTFCRLCVTEYINA-AGDGENVNCPSCFIPLSIDLSAPALEDFSEEKF 774
Query: 611 KKQSIVSRLKMGGKWRSSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRA 670
K SI++R+ M WRSSTKIEALVEELY LR RT+KSIVFSQFTSMLDL+ WRL++A
Sbjct: 775 KNASILNRIDM-NSWRSSTKIEALVEELYLLRKKDRTLKSIVFSQFTSMLDLIHWRLRKA 833
Query: 671 GFQTVKLQGSMTPTQRDQTIKYFMENIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNP 730
GF VKL G MTP R TI+ F +I+ +FLVSLKAGGVALNL EASQVF++DPWWN
Sbjct: 834 GFNCVKLDGGMTPKARAATIEAFSNDINITIFLVSLKAGGVALNLTEASQVFMMDPWWNG 893
Query: 731 SVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRIIELQEKKASMIHATINQDEAAINRLT 790
+V+WQ+ DR+HRIGQ RP+K+ CIE+SIES+IIELQEKKA MIHATI+QDE A+N+L+
Sbjct: 894 AVQWQAMDRIHRIGQKRPIKVITLCIENSIESKIIELQEKKAQMIHATIDQDEKALNQLS 953
Query: 791 PADLQFLFNN 800
D+QFLF+N
Sbjct: 954 VEDMQFLFSN 963
>At1g05120 [L] KOG1002 Nucleotide excision repair protein RAD16
Length = 833
Score = 429 bits (1104), Expect = e-120
Identities = 229/498 (45%), Positives = 326/498 (64%), Gaps = 25/498 (5%)
Query: 316 KEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGTPLQNRIGEMYSLI 375
KEKSLLHS+ + R+ILDEAH IK+R SNTA+AV +L+ RW LSGTPLQNR+GE+YSLI
Sbjct: 344 KEKSLLHSVKWNRIILDEAHYIKERRSNTARAVFALEATYRWALSGTPLQNRVGELYSLI 403
Query: 376 RFLNIEPFTRYYCKQCSCSSENWRFSDYL---HCDDCGHVGMQHTNFFNHFMLKNVQKHG 432
RFL I P++ Y+CK C C R DY+ C C H ++H ++N ++ K + +G
Sbjct: 404 RFLQIRPYSYYFCKDCDC-----RILDYVAHQSCPHCPHNAVRHFCWWNKYVAKPITVYG 458
Query: 433 IEGPGLQSFQNIQ-TLLARIMLRRTKVERADDLGLPPRIVTVRKDYFNEEEKDLYQSLYS 491
G G ++ ++ +L I+LRRTK+ RA DL LPPRI+T+R+D + +E D Y+SLY
Sbjct: 459 SFGLGKRAMILLKHKVLKDILLRRTKLGRAADLALPPRIITLRRDTLDVKEFDYYESLYK 518
Query: 492 DIKRKYNSYVEEGVVLNNYANIFTLITRMRQMADHPDLVL-KRLKGNN----DNNPGVII 546
+ + ++N+Y+E G ++NNYA+IF L+TR+RQ DHP LV+ G N D N
Sbjct: 519 NSQAEFNTYIEAGTLMNNYAHIFDLLTRLRQAVDHPYLVVYSNSSGANANLVDENKSEQE 578
Query: 547 CQLCDDEAEEPIESKCHHRFCRLCINEYIDSFMADEKKLTCPVCHIGLSID------LQQ 600
C LC D AE+ + + C H FC+ C+ F A K+TCP C L++D +
Sbjct: 579 CGLCHDPAEDYVVTSCAHVFCKACLI----GFSASLGKVTCPTCSKLLTVDWTTKADTEH 634
Query: 601 QALEVDEELFKKQSIVSRLKMGGKWRSSTKIEALVEELYNLRSDKRTIKSIVFSQFTSML 660
+A + + F+ SI++R+K+ +++STKIEAL EE+ + + K+IVFSQFTS L
Sbjct: 635 KASKTTLKGFRASSILNRIKLDD-FQTSTKIEALREEIRFMVERDGSAKAIVFSQFTSFL 693
Query: 661 DLVEWRLKRAGFQTVKLQGSMTPTQRDQTIKYFMENIHCEVFLVSLKAGGVALNLCEASQ 720
DL+ + L + G V+L GSMT RD I F E+ C VFL+SLKAGGVALNL AS
Sbjct: 694 DLINYTLGKCGVSCVQLVGSMTMAARDTAINKFKEDPDCRVFLMSLKAGGVALNLTVASH 753
Query: 721 VFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRIIELQEKKASMIHATIN 780
VF++DPWWNP+VE Q+ DR+HRIGQ++P+++ RF IE+++E RI+ LQ+KK + T+
Sbjct: 754 VFMMDPWWNPAVERQAQDRIHRIGQYKPIRVVRFIIENTVEERILRLQKKKELVFEGTVG 813
Query: 781 QDEAAINRLTPADLQFLF 798
+ AI +LT D++FLF
Sbjct: 814 GSQEAIGKLTEEDMRFLF 831
Score = 100 bits (250), Expect = 7e-21
Identities = 62/154 (40%), Positives = 90/154 (58%), Gaps = 15/154 (9%)
Query: 162 HHSELIDVFKKLQESPIRQVERAPQPDGMAIRLLPFQLEGLHWLQQQEESDYNGGVLADE 221
H SE +D L + E A P + + LL +Q E L W +QE+S GG+LADE
Sbjct: 111 HMSEDVD----LDQHNAVIAETAEPPSDLIMPLLRYQKEFLAWATKQEQS-VAGGILADE 165
Query: 222 MGMGKTIQTIALLMS--DITRKP-------SLVVAPTVALMQWKNEIEQHTNK-KLSVYM 271
MGMGKTIQ I+L+++ ++ R +LV+ P VA+ QW NEI + T+ V +
Sbjct: 166 MGMGKTIQAISLVLARREVDRAQFGEAAGCTLVLCPLVAVSQWLNEIARFTSPGSTKVLV 225
Query: 272 YHGANRTNNLGDFKDVDVILTTYAVLESVYRKQV 305
YHGA R N+ +F + D +LTTY+ +ES YR+ +
Sbjct: 226 YHGAKRAKNIKEFMNYDFVLTTYSTVESEYRRNI 259
>At1g02670 [L] KOG1002 Nucleotide excision repair protein RAD16
Length = 678
Score = 343 bits (881), Expect = 5e-94
Identities = 228/628 (36%), Positives = 337/628 (53%), Gaps = 83/628 (13%)
Query: 182 ERAPQPDGMAIRLLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLMS--DIT 239
E A QP + I LL +Q E L W QE S GG+LADEMGMGKTIQ I+L+++ ++
Sbjct: 122 EAAEQPLDLIIPLLKYQKEFLAWATIQELSAVRGGILADEMGMGKTIQAISLVLARREVD 181
Query: 240 RKPS-------LVVAPTVALMQWKNEIEQHTNK-KLSVYMYHGANRTNNLGDFKDVDVIL 291
R S LV+ P VAL QW +EI + T+ V YHG R N+ + D +L
Sbjct: 182 RAKSREAVGHTLVLVPPVALSQWLDEISRLTSPGSTRVLQYHGPKRDKNVQKLMNYDFVL 241
Query: 292 TTYAVLESVYRKQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSL 351
TT ++E+ YRK G + S LHSI + R+I+DEAH+IK+R+S TAKAV +L
Sbjct: 242 TTSPIVENEYRKD-------EGVDETMSPLHSIKWNRIIVDEAHDIKNRSSRTAKAVFAL 294
Query: 352 QTKKRWCLSGTPLQNRIGEMYSLIRFLNIEPFTRYYCKQCSCSSENWRFSDYLHCDDCGH 411
+ RW LSGTPLQN + E+YSL+ + S N+ +S Y
Sbjct: 295 EATYRWALSGTPLQNDVDELYSLVSY----------------SFLNFFYSTY------AS 332
Query: 412 VGMQHTNFFNHFMLKNVQKHGIEGPGLQSFQNIQTLLARIMLRRTKVERADDLGLPPRIV 471
+HT+ +NV + G + L I +R V + + +
Sbjct: 333 FAFRHTHIT---FARNVTVKFLIGGNI--------LPLSIPVRIENVPAVLIMQINTSLG 381
Query: 472 TVRKDYFNEEEKDLYQSLYSDIKRKYNSYVEEGVVLNNYANIFTLITRMRQMADHPDLVL 531
R+D + E D Y+SLY K ++ Y++ G ++NNYA+IF L+ R+RQ DHP LV
Sbjct: 382 GKRRDALSVVEADFYESLYKVSKTTFDGYIQAGTLMNNYAHIFGLLIRLRQAVDHPYLV- 440
Query: 532 KRLKGNNDNNPGVIICQLCDDEAEEPIESKCHHRFCRLCINEYIDSFMADEKKLTCPVCH 591
+ ++P L D E + C + D F+
Sbjct: 441 ------SYSSPSGANANLLDANKNE--------KECGFGHDPSKDYFVTSS--------- 477
Query: 592 IGLSIDLQQQALEVDEELFKKQSIVSRLKMGGKWRSSTKIEALVEELYNLRSDKRTIKSI 651
+ QA + + F+ SI++R+ + +++STKIEAL EE+ + + K+I
Sbjct: 478 -------EHQASKTKLKGFRASSILNRINLDD-FKTSTKIEALREEIRFMVERDWSAKAI 529
Query: 652 VFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQTIKYFMENIHCEVFLVSLKAGGV 711
VFSQFTS LDL+ + L ++G V+L GSM+ +D +K F E C V L+SL+AGGV
Sbjct: 530 VFSQFTSFLDLISYALGKSGVSCVQLVGSMSKAAKDAALKNFKEEPDCRVLLMSLQAGGV 589
Query: 712 ALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRIIELQEKK 771
ALNL AS VF++DPWWNP+VE Q+ DR+HRIGQ +PV++ RF +E ++E +I+ LQ+KK
Sbjct: 590 ALNLTAASHVFMMDPWWNPAVERQAQDRIHRIGQCKPVRVVRFIMEKTVEEKILTLQKKK 649
Query: 772 ASMIHATI-NQDEAAINRLTPADLQFLF 798
+ +T+ + +EA + +L D++ LF
Sbjct: 650 EDLFESTLGDSEEAVVQKLGEDDIKSLF 677
>At5g43530 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1277
Score = 328 bits (840), Expect = 3e-89
Identities = 215/657 (32%), Positives = 332/657 (49%), Gaps = 135/657 (20%)
Query: 215 GGVLADEMGMGKTIQTIAL---------------LMSDIT------------------RK 241
GG+LAD MG+GKT+ TIAL L++D+ +
Sbjct: 682 GGILADAMGLGKTVMTIALILARPGRGNPENEDVLVADVNADKRNRKEIHMALTTVKAKG 741
Query: 242 PSLVVAPTVALMQWKNEIEQHTNKK-LSVYMYHGANRTNNLGDFKDVDVILTTYAVLESV 300
+L++ P L QWK+E+E H+ +SV +Y+G +RT++ DV+LTTY VL S
Sbjct: 742 GTLIICPMALLSQWKDELETHSKPDTVSVLVYYGGDRTHDAKAIASHDVVLTTYGVLTSA 801
Query: 301 YRKQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLS 360
Y++ + S+ H I++YR++LDEAH IK + AKA L + RWCL+
Sbjct: 802 YKQDM-----------ANSIFHRIDWYRIVLDEAHTIKSWKTQAAKATFELSSHCRWCLT 850
Query: 361 GTPLQNRIGEMYSLIRFLNIEPFTRYYCKQCSCSSENWRFSDYLHCDDCGHVGMQHTNFF 420
GTPLQN++ ++YSL+ FL++EP+ NW + L
Sbjct: 851 GTPLQNKLEDLYSLLCFLHVEPWC------------NWAWWSKL---------------- 882
Query: 421 NHFMLKNVQKHGIEGPGLQSFQNIQTLLARIMLRRTKVERADD----LGLPPRIVTVRKD 476
+QK E + + I+ +L +MLRRTK R + L LPP V V +
Sbjct: 883 -------IQKP-YENGDPRGLKLIKAILRPLMLRRTKETRDKEGSLILELPPTDVQVIEC 934
Query: 477 YFNEEEKDLYQSLYSDIKRKYNSYVEEGVVLNNYANIFTLITRMRQMADHPDLVLKRLKG 536
+E E+D Y +L+ K +++ +V +G VL+NYANI L+ R+RQ +HP LV+ R
Sbjct: 935 EQSEAERDFYTALFKRSKVQFDQFVAQGKVLHNYANILELLLRLRQCCNHPFLVMSRADS 994
Query: 537 NN------------DNNPGVII-----------------------CQLCDDEAEEPIESK 561
DNNP + C +C + A++P+ +
Sbjct: 995 QQYADLDSLARRFLDNNPDSVSQNAPSRAYIEEVIQDLRDGNSKECPICLESADDPVLTP 1054
Query: 562 CHHRFCRLCINEYIDSFMADEKKLTCPVCHIGLSIDLQQQALEVDEELFKKQSIVSRLKM 621
C HR CR C+ + S+ + L CP+C + L+ E + + R+ +
Sbjct: 1055 CAHRMCRECL---LTSWRSPSCGL-CPIC---------RTILKRTELISCPTDSIFRVDV 1101
Query: 622 GGKWRSSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSM 681
W+ S+K+ L++ L ++ KSIVFSQ+TS LDL+E L+R GF+ ++ G +
Sbjct: 1102 VKNWKESSKVSELLKCLEKIKKSGSGEKSIVFSQWTSFLDLLEIPLRRRGFEFLRFDGKL 1161
Query: 682 TPTQRDQTIKYFMENIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVH 741
R++ +K F E + L+SLKAGGV LNL AS VF++DPWWNP+VE Q+ R+H
Sbjct: 1162 AQKGREKVLKEFNETKQKTILLMSLKAGGVGLNLTAASSVFLMDPWWNPAVEEQAIMRIH 1221
Query: 742 RIGQFRPVKITRFCIEDSIESRIIELQEKKASMIHATINQDEAAINRLTPADLQFLF 798
RIGQ R V + RF ++D++E R+ ++Q +K MI + +E RL +L+ LF
Sbjct: 1222 RIGQKRTVFVRRFIVKDTVEERMQQVQARKQRMIAGALTDEEVRSARL--EELKMLF 1276
>At5g22750 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1029
Score = 305 bits (781), Expect = 2e-82
Identities = 217/677 (32%), Positives = 326/677 (48%), Gaps = 155/677 (22%)
Query: 215 GGVLADEMGMGKTIQTIALLMS--------------------------DITRKP------ 242
GG+LAD MG+GKT+ TI+LL++ D+T P
Sbjct: 414 GGILADAMGLGKTVMTISLLLAHSWKAASTGFLCPNYEGDKVISSSVDDLTSPPVKATKF 473
Query: 243 ------------------SLVVAPTVALMQWKNEIEQHTNK-KLSVYMYHGANRTNNLGD 283
+L+V P L QWK EIE H LSVY+++G +R +
Sbjct: 474 LGFDKRLLEQKSVLQNGGNLIVCPMTLLGQWKTEIEMHAKPGSLSVYVHYGQSRPKDAKL 533
Query: 284 FKDVDVILTTYAVLESVYRKQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSN 343
DV++TTY VL S + ++ + ++++ ++R++LDEAH IK+ S
Sbjct: 534 LSQSDVVITTYGVLTSEFSQE---------NSADHEGIYAVRWFRIVLDEAHTIKNSKSQ 584
Query: 344 TAKAVNSLQTKKRWCLSGTPLQNRIGEMYSLIRFLNIEPFTRYYCKQCSCSSENWRFSDY 403
+ A +L +RWCL+GTP+QN + ++YSL+RFL IEP+ W + +
Sbjct: 585 ISLAAAALVADRRWCLTGTPIQNNLEDLYSLLRFLRIEPWG------------TWAWWNK 632
Query: 404 LHCDDCGHVGMQHTNFFNHFMLKNVQKHGIEGPGLQSFQNIQTLLARIMLRRTKV----E 459
L VQK EG + + +Q++L IMLRRTK E
Sbjct: 633 L-----------------------VQKPFEEGDE-RGLKLVQSILKPIMLRRTKSSTDRE 668
Query: 460 RADDLGLPPRIVTVRKDYFNEEEKDLYQSLYSDIKRKYNSYVEEGVVLNNYANIFTLITR 519
L LPP V +E E+D Y +L+ K K++ +VE+G VL+NYA+I L+ R
Sbjct: 669 GRPILVLPPADARVIYCELSESERDFYDALFKRSKVKFDQFVEQGKVLHNYASILELLLR 728
Query: 520 MRQMADHPDLVLKR-----------------------LKGNNDNNPGVII---------- 546
+RQ DHP LV+ R L+ + P
Sbjct: 729 LRQCCDHPFLVMSRGDTAEYSDLNKLSKRFLSGKSSGLEREGKDVPSEAFVQEVVEELRK 788
Query: 547 -----CQLCDDEAEEPIESKCHHRFCRLCINEYIDSFMADEKKLTCPVCHIGLSIDLQQQ 601
C +C + E+ + + C HR CR C+ + S+ L CPVC ++ Q+
Sbjct: 789 GEQGECPICLEALEDAVLTPCAHRLCRECL---LASWRNSTSGL-CPVCR--NTVSKQEL 842
Query: 602 ALEVDEELFKKQSIVSRLKMGGKWRSSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLD 661
E F ++ + W S+KI AL+EEL LRS KSI+FSQ+T+ LD
Sbjct: 843 ITAPTESRF-------QVDVEKNWVESSKITALLEELEGLRSSGS--KSILFSQWTAFLD 893
Query: 662 LVEWRLKRAGFQTVKLQGSMTPTQRDQTIKYFMENIHCEVFLVSLKAGGVALNLCEASQV 721
L++ L R F V+L G+++ QR++ +K F E+ V L+SLKAGGV +NL AS
Sbjct: 894 LLQIPLSRNNFSFVRLDGTLSQQQREKVLKEFSEDGSILVLLMSLKAGGVGINLTAASNA 953
Query: 722 FILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRIIELQEKKASMIHATINQ 781
F++DPWWNP+VE Q+ R+HRIGQ + VKI RF ++ ++E R+ +Q +K MI +
Sbjct: 954 FVMDPWWNPAVEEQAVMRIHRIGQTKEVKIRRFIVKGTVEERMEAVQARKQRMISGALTD 1013
Query: 782 DEAAINRLTPADLQFLF 798
E R+ +L+ LF
Sbjct: 1014 QEVRSARI--EELKMLF 1028
>SPBC23E6.02 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1040
Score = 300 bits (769), Expect = 4e-81
Identities = 219/713 (30%), Positives = 341/713 (47%), Gaps = 116/713 (16%)
Query: 165 ELIDVFKKLQESPIRQVE-RAPQPDGMAIRLLPFQLEGLHWLQQQEESDYNGGVLADEMG 223
+L ++FK L E + R P G+ L+ Q EGL WL++ EES GG+LAD+MG
Sbjct: 360 QLEELFKDLDEQLVNDPTIREGTPAGLIPTLMEHQKEGLMWLKRLEESSKKGGILADDMG 419
Query: 224 MGKTIQTIALLMSDITRKP-------SLVVAPTVALMQWKNEI--EQHTNKKLSVYMYHG 274
+GKT+Q +ALL +TR P +L++ P L QW NEI + + + +VY++HG
Sbjct: 420 LGKTVQALALL---VTRPPESKSVKTTLIITPVSLLQQWHNEILTKIAPSHRPTVYIHHG 476
Query: 275 ANRTNNLGD-FKDVDVILTTYAVLESVYRKQVYGFKRKAGTVKEKSLLH----SINFYRV 329
+++ + + + D++LTTY V+ ++ ++ K K H +YRV
Sbjct: 477 SSKKHKIAEQLMSYDIVLTTYNVIAYEFKNKMAYDKSIEDNAPIKKFEHLPFFEAEWYRV 536
Query: 330 ILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGTPLQNRIGEMYSLIRFLNIEPFTRYYCK 389
ILDEA IK+R + A+ L++ RWCLSGTP+QN + E YSLI+FL I+P++
Sbjct: 537 ILDEAQTIKNRNTLAARGCCLLESTYRWCLSGTPMQNGVEEFYSLIKFLRIKPYS----- 591
Query: 390 QCSCSSENWRFSDYLHCDDCGHVGMQHTNFFNHFMLKNVQKHGIEGPGLQSFQNIQTLLA 449
+W ++F F + P + + LL
Sbjct: 592 -------DW------------------SSFSKDFTIPLSSNINTSAP----MKRFRGLLK 622
Query: 450 RIMLRRTKVERADD---LGLPPRIVTVRKDYFNEEEKDLYQSLYSDIKRKYNSYVEEGVV 506
++LRRTK + D L LPP+ + + E + Y +L S + + Y++EG +
Sbjct: 623 AVLLRRTKNTKIDGKPILTLPPKTAVKSETDLSSSEMEFYNTLQSGAQIQMRKYLQEGTI 682
Query: 507 LNNYANIFTLITRMRQMADHPDLVLKRLKGNNDNNP-----------------------G 543
+Y ++ L+ R+RQ HP L++ R +DN+
Sbjct: 683 TTHYGSLLVLLLRLRQACCHPWLIVAREAAVDDNDSFQAKNRAIYNQIYPEAVNRLKLIE 742
Query: 544 VIICQLCDDE-AEEPIESKCHHRFCRLCINEYIDSFMADEKKLT-------CPVCHIGLS 595
+ C LC D AE I C H CR C+ I S K+ + C VC +
Sbjct: 743 TLQCSLCMDVVAELLIIVPCGHFLCRECLTHVITSSEDMAKQTSNENISPKCSVCEEYID 802
Query: 596 ID-LQQQAL-------------------EVDEELFKKQ--SIVSRLKMGGK-------WR 626
+ L AL E EL KQ +I+ +MG K W
Sbjct: 803 TERLLSYALFRRYSGMAPIVDADNKLRTENISELLPKQYSNILENRQMGMKIFTDPKHWT 862
Query: 627 SSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQR 686
+STKIE + + + + T K ++FSQF S L+L ++ G + + G ++ +R
Sbjct: 863 TSTKIEKALNAVKEIIKKQPTDKILIFSQFVSFLELFTVPFRQEGIKYLMYTGGLSTAER 922
Query: 687 DQTIKYFMENIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQF 746
+Q + F + + V L+SLKAG V LNL A+ V ILDP+WNP +E Q+ DR HRIGQ
Sbjct: 923 NQALINFEVDPNVRVLLISLKAGNVGLNLTCANHVIILDPFWNPYIEEQAVDRAHRIGQD 982
Query: 747 RPVKITRFCIEDSIESRIIELQEKKASMIHATINQDE-AAINRLTPADLQFLF 798
+PV I R ++IE R++ LQ++K +I + + + I+RL +L FLF
Sbjct: 983 KPVNILRIVTNNTIEERVLALQDRKRELIDSALGEKGLREISRLNTKELSFLF 1035
>SPBC582.10c [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 830
Score = 299 bits (765), Expect = 1e-80
Identities = 218/650 (33%), Positives = 336/650 (51%), Gaps = 91/650 (14%)
Query: 189 GMAIRLLPFQLEGLHWLQQQE---ESDYNGGVLADEMGMGKTIQTIALLMSDI------T 239
GM IRLL Q++GL WL+ +E +S +GG+LAD+MG+GKTIQ IAL++S +
Sbjct: 228 GMHIRLLDHQVQGLTWLKSRETVSKSSASGGILADDMGLGKTIQMIALILSHPLPKKKHS 287
Query: 240 RKPSLVVAPTVALMQWKNEIEQHTNKKLSVYMYHGANRTNNLGDFKDVDVILTTYAVLES 299
K +LVVAP + QW++E++ T KL+ +YHGA+R L + DV++TTY +L S
Sbjct: 288 IKSTLVVAPLSLIKQWESEVQ--TKSKLTAIVYHGASRYKLLKVIHEYDVVITTYQILVS 345
Query: 300 VY-RKQVYGFKRKAGTV-----KEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQT 353
+ G K+ T K+K L + ++R+ILDEAH IK+++S +A A +LQ
Sbjct: 346 EWVSHNTTGTDGKSPTEAKSYEKKKPSLFAFYWWRIILDEAHTIKNKSSKSALACCALQG 405
Query: 354 KKRWCLSGTPLQNRIGEMYSLIRFLNIEPFTRYYCKQCSCSSENWRFSDYLHCDDCGHVG 413
RWCL+GTPLQN + E+YSL++FL+I PF W+ D + C
Sbjct: 406 INRWCLTGTPLQNNVDELYSLVKFLHINPFN---------DQSVWK--DQISLPLC---- 450
Query: 414 MQHTNFFNHFMLKNVQKHGIEGPGLQSFQNIQTLLARIMLRRTKVERADDLG-------- 465
+G F+ ++ LL+ IMLRRTK + G
Sbjct: 451 --------------------QGEENLVFKRLRMLLSVIMLRRTKTLLEANAGKDGTGGAL 490
Query: 466 -LPPRIVTVRKDYFNEEEKDLYQSLYSDIKRKYNSYVEEGVVLNNYANIFTLITRMRQMA 524
L R+V F E E+D Y +L +++R +++V G + NY NI L+ R+RQ
Sbjct: 491 KLSKRLVYKVICKFEESERDFYSNLARNMERTMSNFVNSGKLGKNYTNILCLLLRLRQAC 550
Query: 525 DHPDLVLKRLKGNND---------NNPGVIICQLCDDEAE--EPIESKCHHR-FCRLCIN 572
+HP + + + + D N + Q DD A E +E + FC +C+
Sbjct: 551 NHPQSLNFQFEQDVDAFNALDGAANTNKLASDQDVDDLANLLETVEIGSRKKSFCTICMA 610
Query: 573 EYIDSFMADEKKLTCPVCHIGLSIDLQQQALEVDEELFKKQSIVSRLKMGGKWRSSTKIE 632
E F EKK C C +L + + +++ K S K R KI
Sbjct: 611 ELPPDF--HEKK--CKDCSRNFK-ELDKGIQDPNDKTLYKSS---------KIREILKIL 656
Query: 633 ALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQTIKY 692
+L E+ + + + K+I+FSQFT+ LD+++ L++AG V+ G M R++++
Sbjct: 657 SLDEQEED-DTVRGLRKTIIFSQFTTFLDIIDLHLRKAGIGFVRYDGRMNNRAREKSLDL 715
Query: 693 FMENIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKIT 752
+ +V L SLK G + LNL AS+V + D WWNP++E Q+ DRVHRIGQ R V +
Sbjct: 716 LRSDSGTQVLLCSLKCGALGLNLTCASRVILCDVWWNPAIEEQAIDRVHRIGQRRDVLVY 775
Query: 753 RFCIEDSIESRIIELQEKKASMIHATINQDEAAI---NRLTPADLQFLFN 799
+ +E++IE +I+ELQ K + + + ++ +LT DL FLFN
Sbjct: 776 KLVVENTIEEKIVELQNLKRDLAKQALGDGKKSVFTSKKLTLNDLLFLFN 825
>SPAC17A2.12 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 897
Score = 298 bits (763), Expect = 2e-80
Identities = 223/732 (30%), Positives = 348/732 (47%), Gaps = 125/732 (17%)
Query: 151 PFERNTAKLYAHH--SELIDVFKKLQESPIRQVE-----RAPQPDGMAIRLLPFQLEGLH 203
P+ER K+ H EL + + SP ++ Q G+ + LLP Q+EG
Sbjct: 203 PYER---KVQPEHVTKELHQLLQHNTPSPFDTIDLQLKNEQVQSAGLLVSLLPHQVEGHA 259
Query: 204 WLQQQEESDYNGGVLADEMGMGKTIQTIALLMS----DITRKPSLVVAPTVALMQWKNEI 259
W++ E+S GGV+AD+MG+GKTIQTIALL++ D RK +L+V L QW E+
Sbjct: 260 WMESMEQSSKCGGVMADDMGLGKTIQTIALLLTQKSQDPLRKTNLIVVSVALLHQWAEEL 319
Query: 260 EQ--HTNKKLSVYMYHGANRTN-NLGDFKDVDVILTTYAVLESVYRKQVYGFKRK---AG 313
H +KKLSVY++HG+ + N + + DV+LTTY++L + KQ F
Sbjct: 320 STKVHPSKKLSVYIHHGSTKKNLDSYELSQYDVVLTTYSML-AYEMKQNDAFNNNNPATA 378
Query: 314 TVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGTPLQNRIGEMYS 373
T L ++YR++LDEAH I++R + AK L K RWCLSGTP+QN I E YS
Sbjct: 379 TPPPACSLLETSWYRIVLDEAHTIRNRDTLAAKCCVKLDAKYRWCLSGTPIQNHIDEFYS 438
Query: 374 LIRFLNIEPFTRYYCKQCSCSSENWRFSDYLHCDDCGHVGMQHTNFFNHFMLKNVQKHGI 433
L++FL I+P YC + + R LK+ + +
Sbjct: 439 LLKFLRIKP----YCVWSLFAKDISR------------------------PLKSYRADIV 470
Query: 434 EGPGLQSFQNIQTLLARIMLRRTKVERADDL---GLPPRIVTVRKDYFNEEEKDLYQSLY 490
E + + ++ LLA + RRTK R ++L LPP+ + EE+ LY
Sbjct: 471 EA----ALKRLRILLASTVFRRTKETRVNNLPIVNLPPKTIRTVSVNLLPEERALYNEQM 526
Query: 491 SDIKRKYNSYVEEGVVLNNYANIFTLITRMRQMADHPDLV-------------------- 530
S + ++Y L+ Y + + R+RQ HP LV
Sbjct: 527 SSAQSLVDNYFNNDHDLSRYGFLLVSLLRLRQFCCHPWLVKSSSLDNSFRIRDSENVRNA 586
Query: 531 --------LKRLKGNNDNNPGVIICQLCDDEAEEPI-ESKCHHRFCRLCINEYIDSFMAD 581
++R+ D N C +C D P+ C H C+ C++ +
Sbjct: 587 CKSLDPLTIERIATLQDFN-----CSVCLDPCLAPVFIIPCGHFTCQECMSMLVGQKYGS 641
Query: 582 EKKLT----CPVCHIGLSID-----------------LQQQALEVDEELFKKQSIVSRL- 619
T CP+C + D L+Q L++++ +++SI R
Sbjct: 642 SSTSTIIAKCPMCRGNIVQDSLVDATILQAIHGPLNSLKQLELDMNQSFSEQESIKLRWE 701
Query: 620 ------------KMGGKWRSSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRL 667
K +W+SS+K+ + + ++ KR K +V+SQF+ L LV L
Sbjct: 702 NRIDQMFTKKFGKRASEWKSSSKLNQARQTILDIIGSKRNEKILVYSQFSQYLCLVSHML 761
Query: 668 KRAGFQTVKLQGSMTPTQRDQTIKYFMENIHCEVFLVSLKAGGVALNLCEASQVFILDPW 727
K + V+ G+M+ QR +++ F + V LVSLKAG V LNL A+ V + +P+
Sbjct: 762 KLENIRHVRYDGTMSANQRQKSLHSFNNDKDVLVMLVSLKAGSVGLNLTIANHVILQEPF 821
Query: 728 WNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRIIELQEKKASMIHATINQDE-AAI 786
+NPS+E Q+ DRVHR+GQ +PV + RF +D+IE RI+ +Q KK ++ ++ +E +
Sbjct: 822 YNPSIEDQAIDRVHRLGQQKPVTVYRFITKDTIEERIVSVQRKKRQLVKEALDSNENNPL 881
Query: 787 NRLTPADLQFLF 798
+RL +L +LF
Sbjct: 882 SRLDKEELLYLF 893
>At3g20010 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1047
Score = 289 bits (739), Expect = 1e-77
Identities = 199/669 (29%), Positives = 321/669 (47%), Gaps = 152/669 (22%)
Query: 243 SLVVAPTVALMQWKNEIEQHTNK--KLSVYMYHGANRTNNLGDFKDVDVILTTYAVL--- 297
+L+V P + QW E+++ ++ KLSV +YHG+NRT + + + DV++TTYA++
Sbjct: 416 TLIVCPASVVRQWARELDEKVSEESKLSVLVYHGSNRTKDPNELAEYDVVVTTYAIVTNE 475
Query: 298 ---------------------------ESVYRKQVYGFKRKAGTVKEKSL---------- 320
+ RK V G +K+ KS
Sbjct: 476 APNKFLVDEDENDEKNTDRYGLASGFSNNKKRKVVVGASKKSKRRGRKSTNDTSSEPDCG 535
Query: 321 -LHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGTPLQNRIGEMYSLIRFLN 379
L + ++R++LDEA IK+ + A++ +L+ K+RWCLSGTP+QN I ++YS RFL
Sbjct: 536 PLGKVGWFRIVLDEAQTIKNYRTQMARSCCTLRAKRRWCLSGTPIQNTIDDLYSYFRFLR 595
Query: 380 IEPFTRYYCKQCSCSSENWRFSDYLHCDDCGHVGMQHTNFFNHFMLKNVQKHGIEGPGLQ 439
+P+ Y +F++ K I Q
Sbjct: 596 YDPYAVY------------------------------KSFYSTI------KVPISRNSCQ 619
Query: 440 SFQNIQTLLARIMLRRTKVERADD---LGLPPRIVTVRKDYFNEEEKDLYQSLYSDIKRK 496
++ +Q +L IMLRRTK D + LPP++V + + F+ E+ Y+ L +D + +
Sbjct: 620 GYKKLQAVLRAIMLRRTKGTLLDGKPIINLPPKVVNLSQVDFSVAERSFYKKLEADSRSQ 679
Query: 497 YNSYVEEGVVLNNYANIFTLITRMRQMADHPDLVLK---------------------RLK 535
+ +Y + G + NYANI L+ R+RQ DHP LV + R +
Sbjct: 680 FKAYADAGTLSQNYANILLLLLRLRQACDHPQLVKRYNSDPVGKVSEAAVRRLPREARSR 739
Query: 536 GNNDNNPGVIICQLCDDEAEEPIESKCHHRFCRLCINEYIDSFMADEKKLTCPVCHIGLS 595
N IC C++ E+P+ + C H FC C+ EYI DE P C L+
Sbjct: 740 LINRLESSSAICYECNEPPEKPVVTLCGHIFCYECVLEYITG---DENTCPVPRCKQQLA 796
Query: 596 IDL--QQQALE----------------VDEELFKKQSIVS-RLK---------------- 620
D+ + +L +D +F+K+ S ++K
Sbjct: 797 RDVVFSESSLRNCTSDDSGCSSSHDNGLDRSVFQKRDFCSSKIKAVLDILQSLSQPDSPN 856
Query: 621 --MGGKWRSSTKIE-----ALVE--ELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAG 671
G+ SS++ +VE L++ + +K+I+FSQ+T MLDLVE R+ +G
Sbjct: 857 SAQHGQMPSSSRPYDDDDVTIVEPMRLHSSSPSQGAVKTIIFSQWTGMLDLVELRILESG 916
Query: 672 FQTVKLQGSMTPTQRDQTIKYFMENIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPS 731
+ +L G+M+ RD+ +K F + +V L+SLKAG + LN+ A V +LD WWNP+
Sbjct: 917 IEFRRLDGTMSLAARDRAVKEFSKKPDVKVMLMSLKAGNLGLNMVAACHVILLDLWWNPT 976
Query: 732 VEWQSGDRVHRIGQFRPVKITRFCIEDSIESRIIELQEKKASMIHATINQDE--AAINRL 789
E Q+ DR HRIGQ RPV +TR I+D++E RI++LQE+K +M+ + ++ ++ RL
Sbjct: 977 TEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILKLQEEKRTMVASAFGEEHGGSSATRL 1036
Query: 790 TPADLQFLF 798
T DL++LF
Sbjct: 1037 TVDDLKYLF 1045
>At1g50410 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1056
Score = 283 bits (725), Expect = 6e-76
Identities = 208/685 (30%), Positives = 316/685 (45%), Gaps = 179/685 (26%)
Query: 243 SLVVAPTVALMQWKNEIEQHTNK--KLSVYMYHGANRTNNLGDFKDVDVILTTYAVLESV 300
+L+V P + QW E+++ KLSV +YHG NRT + + DV++TTYA++ +
Sbjct: 420 TLIVCPASVVRQWARELDEKVTDEAKLSVLIYHGGNRTKDPIELAKYDVVMTTYAIVSNE 479
Query: 301 YRKQV--------------YGF--------KRK--AGTVK-----------------EKS 319
KQ YG KRK GT K +
Sbjct: 480 VPKQPLVDDDENDEKNSEKYGLASGFSINKKRKNVVGTTKKSKKKKGNNNAGDSSDPDSG 539
Query: 320 LLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGTPLQNRIGEMYSLIRFLN 379
L + ++RV+LDEA IK+ + A+A L+ K+RWCLSGTP+QN I ++YS RFL
Sbjct: 540 TLAKVGWFRVVLDEAQTIKNHRTQVARACCGLRAKRRWCLSGTPIQNTIDDLYSYFRFLK 599
Query: 380 IEPFTRY--YCKQCSCSSENWRFSDYLHCDDCGHVGMQHTNFFNHFMLKNVQKHGIEGP- 436
+P+ Y +C H I+GP
Sbjct: 600 YDPYAVYKSFC------------------------------------------HQIKGPI 617
Query: 437 ---GLQSFQNIQTLLARIMLRRTKVERADD---LGLPPRIVTVRKDYFNEEEKDLYQSLY 490
LQ ++ +Q +L IMLRRTK D + LPP+ + + + F+ EE+ Y L
Sbjct: 618 SRNSLQGYKKLQAVLRAIMLRRTKGTLLDGQPIINLPPKTINLSQVDFSVEERSFYVKLE 677
Query: 491 SDIKRKYNSYVEEGVVLNNYANIFTLITRMRQMADHPDLVLKRLKGNNDNNPGVI----- 545
SD + ++ +Y G + NYANI ++ R+RQ DHP LV K N ++ G +
Sbjct: 678 SDSRSQFKAYAAAGTLNQNYANILLMLLRLRQACDHPQLV----KRYNSDSVGKVSEEAV 733
Query: 546 -------------------ICQLCDDEAEEPIESKCHHRFCRLCINEYIDSFMADEKKLT 586
IC +C D E+P+ + C H FC C+++YI DE
Sbjct: 734 KKLPKEDLVSLLSRLESSPICCVCHDPPEDPVVTLCGHIFCYQCVSDYITG---DEDTCP 790
Query: 587 CPVCHIGLSIDL--QQQALE--VDEEL----FKKQSIVSRLKMGGKWRSSTKIEALVEEL 638
P C L+ D+ + L V ++L + S + G++ SS+KI+A+++ L
Sbjct: 791 APRCREQLAHDVVFSKSTLRSCVADDLGCSSSEDNSHDKSVFQNGEF-SSSKIKAVLDIL 849
Query: 639 YNLR-------------------------------------------SDKRTIKSIVFSQ 655
+L S+ IK+I+FSQ
Sbjct: 850 QSLSNQGTSNSTQNGQMASSSQQPNDDDDDDDDDVTIVEKTSLKSTPSNGGPIKTIIFSQ 909
Query: 656 FTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQTIKYFMENIHCEVFLVSLKAGGVALNL 715
+T MLDLVE L + +L G+M+ RD+ +K F + +V ++SLKAG + LN+
Sbjct: 910 WTGMLDLVELSLIENSIEFRRLDGTMSLIARDRAVKEFSNDPDVKVMIMSLKAGNLGLNM 969
Query: 716 CEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRIIELQEKKASMI 775
A V +LD WWNP+ E Q+ DR HRIGQ RPV +TR I++++E RI+ LQE+K M+
Sbjct: 970 IAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKNTVEDRILALQEEKRKMV 1029
Query: 776 HATINQDE--AAINRLTPADLQFLF 798
+ +D ++ RLT DL++LF
Sbjct: 1030 ASAFGEDHGGSSATRLTVDDLKYLF 1054
>At1g11100 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1227
Score = 282 bits (721), Expect = 2e-75
Identities = 216/772 (27%), Positives = 351/772 (44%), Gaps = 179/772 (23%)
Query: 152 FERNTAKLYAHHSELIDVFKKLQESPIRQVERAPQPDG-MAIRLLPFQLEGLHWLQQQEE 210
FE N + H++L D+ + E A PDG +A+ LL Q L W+ Q+E
Sbjct: 508 FESNKGNMN-FHADLQDLSQHSSE--------ASPPDGVLAVSLLRHQRIALSWMSQKET 558
Query: 211 SDYN--GGVLADEMGMGKTIQTIALLMSD------------------------------- 237
S GG+LAD+ G+GKT+ TIAL++++
Sbjct: 559 SGNPCFGGILADDQGLGKTVSTIALILTERSTPYLPCEEDSKNGGCNQSDHSQVVFNENK 618
Query: 238 --------ITRKPS---LVVAPTVALMQWKNEIEQHTNKK--LSVYMYHGANRTNNLGDF 284
+ +P+ L+V PT + QW +E+ + + LSV +YHG +RT + +
Sbjct: 619 VVEDSLCKMRGRPAAGTLIVCPTSLMRQWADELRKKVTLEAHLSVLVYHGCSRTKDPHEL 678
Query: 285 KDVDVILTTYAVLESVYRKQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNT 344
DV++TTY+++ + +G + + ++++RV+LDEA +IK+ +
Sbjct: 679 AKYDVVITTYSLVSKRKHMDCEPVEFLSGPLAQ------VSWFRVVLDEAQSIKNYKTQA 732
Query: 345 AKAVNSLQTKKRWCLSGTPLQNRIGEMYSLIRFLNIEPFTRYYCKQCSCSSENWRFSDYL 404
+ A + L K+RWCLSGTP+QN I ++YS RFL +P++ Y Q C + S Y
Sbjct: 733 SIACSGLHAKRRWCLSGTPIQNSIADLYSYFRFLKYDPYSSY---QTFCETIKNPISSY- 788
Query: 405 HCDDCGHVGMQHTNFFNHFMLKNVQKHGIEGPGLQSFQNIQTLLARIMLRRTKVERADD- 463
PG + ++ +Q +L ++MLRRTK D
Sbjct: 789 -------------------------------PG-EGYKTLQAILKKVMLRRTKDTLLDGK 816
Query: 464 --LGLPPRIVTVRKDYFNEEEKDLYQSLYSDIKRKYNSYVEEGVVLNNYANIFTLITRMR 521
+ LPP+ + +R+ F +EE+D Y L D + ++ Y E G V NY NI ++ R+R
Sbjct: 817 PVISLPPKSIELRRVDFTKEERDFYSKLECDSRDQFKEYAEAGTVKQNYVNILLMLLRLR 876
Query: 522 QMADHPDLV-----------LKRLKGN------NDNNPGVIICQLCDDE-AEEPIESKCH 563
Q HP LV +K+L + + IC +C+ + + S C
Sbjct: 877 QACGHPLLVSSLSWSSSAEMVKKLPYEKLTFLLHRLEASLAICGICNVRLSTHAVVSLCG 936
Query: 564 HRFCRLCINEYIDSFMADEKKLTCPVCHIGLSI--------------DLQ---------- 599
H FC CI E + D + C +GL I DL
Sbjct: 937 HVFCNQCICECL---TRDNNQCPLSYCKVGLEISSLFSRETLENAMLDLHKLDAPCDRTT 993
Query: 600 --------------------QQALEVDEELFKKQSIVSRLKMGGKWRSSTKIEALVEELY 639
+ AL++ + L + QS + + + + + +++ +
Sbjct: 994 SDPVGSGEPCENLPCGSSKIKAALDILQSLSRPQSPATVMNDVNQSSENGENNQQLDKSF 1053
Query: 640 NLRSD--KRTIKSIV---------FSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQ 688
+L + K ++ +V F+Q+T MLDL+E LK +G Q + G MT RD
Sbjct: 1054 SLPATPAKSSVGGVVNVAGEKAIVFTQWTKMLDLLEAGLKSSGIQYRRFDGKMTVPARDA 1113
Query: 689 TIKYFMENIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRP 748
++ F V ++SLKA + LN+ A V +LD WWNP+ E Q+ DR HRIGQ RP
Sbjct: 1114 AVQDFNTLPDVSVMIMSLKAASLGLNMVAACHVIMLDLWWNPTTEDQAIDRAHRIGQTRP 1173
Query: 749 VKITRFCIEDSIESRIIELQEKKASMIHATINQDE--AAINRLTPADLQFLF 798
VK+ RF ++D++E RI+ LQ+KK M+ + + E + + L+ DL +LF
Sbjct: 1174 VKVVRFTVKDTVEDRILALQQKKRKMVASAFGEHENGSRESHLSVEDLNYLF 1225
>At1g61140 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1287
Score = 280 bits (715), Expect = 8e-75
Identities = 217/769 (28%), Positives = 345/769 (44%), Gaps = 197/769 (25%)
Query: 187 PDG-MAIRLLPFQLEGLHWLQQQEESDY--NGGVLADEM--------------------- 222
PDG + + LL Q L W+ Q+E S + +GG+LAD+
Sbjct: 555 PDGVLTVPLLRHQRIALSWMAQKETSGFPCSGGILADDQGLGKTVSTIALILKERSKPAQ 614
Query: 223 --------------------------GMGKTIQTIALLMSD----------ITRKPS--- 243
G K + LL ++ +T +P+
Sbjct: 615 ACEESTKKEIFDLESETGECAPLKPSGRSKHFEHSQLLSNENKVGGDSVGKVTGRPAAGT 674
Query: 244 LVVAPTVALMQWKNEIEQHTNKK--LSVYMYHGANRTNNLGDFKDVDVILTTYAVLESVY 301
LVV PT + QW +E+ + + LSV +YHG++RT + + DV++TT++++
Sbjct: 675 LVVCPTSVMRQWADELHKKVTSEANLSVLVYHGSSRTKDPHELAKYDVVVTTFSIVSMEV 734
Query: 302 RKQ-------------------VYGF-----------KRKAGTVKEK-----SLLHSINF 326
KQ GF +K G+ K+K L +++
Sbjct: 735 PKQPLVDDEDEEKDGVHDGGTAATGFCSNKKRKYPPDSKKKGSKKKKVEFLSGPLAKVSW 794
Query: 327 YRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGTPLQNRIGEMYSLIRFLNIEPFTRY 386
+RV+LDEA +IK+ + A+A L+ K+RWCLSGTP+QN I ++YS RFL +P++ Y
Sbjct: 795 FRVVLDEAQSIKNYKTQVARACWGLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYSSY 854
Query: 387 YCKQCSCSSENWRFSDYLHCDDCGHVGMQHTNFFNHFMLKN-VQKHGIEGPGLQSFQNIQ 445
CS+ +KN + ++ ++G +Q +Q
Sbjct: 855 VL---FCST-----------------------------IKNPITRNPVKG-----YQKLQ 877
Query: 446 TLLARIMLRRTKVERADD---LGLPPRIVTVRKDYFNEEEKDLYQSLYSDIKRKYNSYVE 502
+L +MLRRTK D + LPP+ + +RK F EE+D Y L ++ + ++ Y E
Sbjct: 878 AILKTVMLRRTKGSLLDGKPIISLPPKSIELRKVDFTVEERDFYSKLEAESRTQFREYAE 937
Query: 503 EGVVLNNYANIFTLITRMRQMADHPDLV-----------LKRLKGNNDNNPGVIICQLCD 551
G V NY NI ++ R+RQ DHP LV + K ++ + IC +C+
Sbjct: 938 AGTVKQNYVNILLMLLRLRQACDHPLLVNGEYSFTWESSVGLAKKQIQSDASLAICGICN 997
Query: 552 DEAEEPIESKCHHRFCRLCINEYIDSFMADEKKLTCPVCHIGLSIDLQQQALEVDEELFK 611
D E+ + S C H FC+ CI E + D C++ L+I +D+ +
Sbjct: 998 DAPEDAVASVCGHVFCKQCIYERLTG---DSNHCPFANCNVRLTISSLSSKTRLDDAMPD 1054
Query: 612 KQSIVSRLKMG-----GKWRSSTKIEALVEELYNLR-----SDKRTI------------- 648
Q + + S+KI+A +E L +L +D I
Sbjct: 1055 MQERATSNSLSPCSDEDLPYGSSKIKAALEILQSLPKAHDLTDSNQISENREYSGLSITP 1114
Query: 649 -----------------KSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQTIK 691
K+IVFSQ+T ML+L+E L + Q +L G+M+ RD+ ++
Sbjct: 1115 VKNEGMSVDVPIKVAGEKAIVFSQWTKMLNLLEASLVSSHIQYRRLDGTMSVAARDKAVQ 1174
Query: 692 YFMENIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKI 751
F V ++SLKA + LN+ A V +LD WWNP+ E Q+ DR HRIGQ RPV +
Sbjct: 1175 DFNTLPEVTVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTV 1234
Query: 752 TRFCIEDSIESRIIELQEKKASMIHATINQDE--AAINRLTPADLQFLF 798
RF ++D++E RI+ LQ+KK M+ + +DE + + LT DL +LF
Sbjct: 1235 VRFTVKDTVEDRILALQQKKRMMVASAFGEDEKGSRQSHLTVEDLSYLF 1283
>Hs21071052 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1009
Score = 271 bits (692), Expect = 4e-72
Identities = 184/569 (32%), Positives = 287/569 (50%), Gaps = 87/569 (15%)
Query: 236 SDITRKP--SLVVAPTVALMQWKNEIEQH--TNKKLSVYMYHGANRTNNLGDFKDVDVIL 291
+D+ +P +L++ P L W ++ QH ++ L+ Y+Y+G +R D++L
Sbjct: 469 TDVEERPRTTLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLSKQDIVL 528
Query: 292 TTYAVLESVYRKQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSL 351
TTY +L Y GT K S LHSI + RVILDE H I++ + KAV L
Sbjct: 529 TTYNILTHDY-----------GT-KGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDL 576
Query: 352 QTKKRWCLSGTPLQNRIGEMYSLIRFLNIEPFTRYYCKQCSCSSENWRFSDYLHCDDCGH 411
++++RW L+GTP+QN + +++SL+ FL ++PF E W
Sbjct: 577 ESERRWVLTGTPIQNSLKDLWSLLSFLKLKPFI---------DREWW------------- 614
Query: 412 VGMQHTNFFNHFMLKNVQKHGIEGPGLQSFQNIQTLLARIMLRRTKVERADD---LGLPP 468
H ++ G EG + +Q+L+ I LRRTK + L LP
Sbjct: 615 ----------HRTIQRPVTMGDEG----GLRRLQSLIKNITLRRTKTSKIKGKPVLELPE 660
Query: 469 RIVTVRKDYFNEEEKDLYQSLYSDIKRKYNSYVEEGVVLNNYANIFTLITRMRQMADHPD 528
R V ++ ++EE+ +YQS+ ++ + Y EG VL +YA++ L+ R+RQ+ H
Sbjct: 661 RKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTY 720
Query: 529 LVLKRLKGNNDNNPG--------------VII-------CQLCDDEAEEPIESKCHHRFC 567
L+ + N + +I+ C +C D P+ + C H FC
Sbjct: 721 LLTNAVSSNGPSGNDTPEELRKKLIRKMKLILSSGSDEECAICLDSLTVPVITHCAHVFC 780
Query: 568 RLCINEYIDSFMADEKKLTCPVCHIGLSIDLQQQALEVDEELFKKQSIVSRLKMGGKWRS 627
+ CI + I + ++ CP+C + D LE E + S K +W S
Sbjct: 781 KPCICQVIQN---EQPHAKCPLCRNDIHED---NLLECPPEELARDS---EKKSDMEWTS 831
Query: 628 STKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRD 687
S+KI AL+ L +LR IKS+V SQFT+ L L+E LK +GF +L GSM +R
Sbjct: 832 SSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRV 891
Query: 688 QTIKYFM--ENIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQ 745
++I+ F E + L+SLKAGGV LNL AS+VF++DP WNP+ E Q DR HR+GQ
Sbjct: 892 ESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQ 951
Query: 746 FRPVKITRFCIEDSIESRIIELQEKKASM 774
+ V IT+F ++DS+E ++++Q KK +
Sbjct: 952 KQEVIITKFIVKDSVEENMLKIQNKKREL 980
>At5g05130 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 881
Score = 259 bits (663), Expect = 9e-69
Identities = 207/756 (27%), Positives = 319/756 (41%), Gaps = 202/756 (26%)
Query: 153 ERNTAKLYAHHSELIDVFKKLQESPIRQVERAPQPDGMAIRLLPFQLEGLHWLQQQEESD 212
+R+ K++ E + + KL V P + + L Q EGL WL +E+S
Sbjct: 197 KRSVDKIFKLVDENVKLMGKL-------VAAEPPREVIKSELFAHQKEGLGWLLHREKSG 249
Query: 213 ----------------------------YNGGVLADEMGMGKTIQTIALLMSD------- 237
GGV AD+MG+GKT+ ++L+ D
Sbjct: 250 ELPPFWEEKDGEFLNTLTNYRSDKRPDPLRGGVFADDMGLGKTLTLLSLIAFDRYGNAST 309
Query: 238 ---------------------------------------------ITRKPSLVVAPTVAL 252
+++K +L+V P +
Sbjct: 310 STPTEEPLDGEGDKIEKKGKKRGRGKSSESVTRKKLKTDDVVGMNVSQKTTLIVCPPSVI 369
Query: 253 MQWKNEIEQHTNKK-LSVYMYHGANRTNNLGDFKDVDVILTTYAVLESVYRKQVYGFKRK 311
W ++E+HT L VYMYHG RT+++ + D++LTTY L
Sbjct: 370 SAWITQLEEHTVPGILKVYMYHGGERTDDVNELMKYDIVLTTYGTLA------------- 416
Query: 312 AGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGTPLQNRIGEM 371
E S + + + R+ILDEAH IK+ + ++ V L+ +RW ++GTP+QN ++
Sbjct: 417 VEESWEDSPVKKMEWLRIILDEAHTIKNANAQQSRVVCKLKASRRWAVTGTPIQNGSFDL 476
Query: 372 YSLIRFLNIEPFTRYYCKQCSCSSENWRFSDYLHCDDCGHVGMQHTNFFNHFMLKNVQKH 431
YSL+ FL EPF+ +K+ +
Sbjct: 477 YSLMAFLRFEPFS----------------------------------------IKSYWQS 496
Query: 432 GIEGP----GLQSFQNIQTLLARIMLRRTKVERADDLGLPPRIVTVRKDYFNEEEKDLYQ 487
I+ P + +Q L+A I LRRTK + +GLPP+ V + EE+ LY
Sbjct: 497 LIQRPLGQGNKKGLSRLQVLMATISLRRTKEKSL--IGLPPKTVETCYVELSPEERQLYD 554
Query: 488 SLYSDIKRKYNSYVEEGVVLNNYANIFTLITRMRQMADH--------------------- 526
+ + K + + G ++ NY+ + ++I R+RQ+ D
Sbjct: 555 HMEGEAKGVVQNLINNGSLMRNYSTVLSIILRLRQLCDDMSLCPPELRSFTTSTSVEDVT 614
Query: 527 --PDLVLKRLKGNNDNNPGVIICQLCDDEAEEPIESKCHHRFCRLCINEYIDSFMADEKK 584
P+L+ K + D C +C I ++C H FCR CI + + K
Sbjct: 615 DKPELLQKLVAALQDGED--FDCPICISPPTNIIITRCAHIFCRACILQTLQ-----RSK 667
Query: 585 LTCPVCHIGLS-IDLQQ------QALEVDEELFKKQSIVSRLKMGGKWRSSTKIEALVEE 637
CP+C L+ DL + D E K + S+K+ AL+
Sbjct: 668 PLCPLCRGSLTQSDLYNAPPPPPDSSNTDGEDAKSST------------KSSKVSALLSL 715
Query: 638 LYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQTIKYF--ME 695
L R + KS+VFSQF ML L+E LK AGF ++L G+MT +R Q I F E
Sbjct: 716 LMASRQENPNTKSVVFSQFRKMLLLLETPLKAAGFTILRLDGAMTVKKRTQVIGEFGNPE 775
Query: 696 NIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFC 755
V L SLKA G +NL AS+V++ DPWWNP+VE Q+ DR+HRIGQ + VK+ R
Sbjct: 776 LTGPVVLLASLKASGTGINLTAASRVYLFDPWWNPAVEEQAMDRIHRIGQKQEVKMIRMI 835
Query: 756 IEDSIESRIIELQEKKASMIHATI----NQDEAAIN 787
+SIE R++ELQ+KK ++ + +DE +N
Sbjct: 836 ARNSIEERVLELQQKKKNLANEAFKRRQKKDEREVN 871
>YOR191w [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1619
Score = 259 bits (662), Expect = 1e-68
Identities = 205/707 (28%), Positives = 325/707 (44%), Gaps = 123/707 (17%)
Query: 187 PDGMAIRLLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLMSDITR----KP 242
P+ M + LL Q GLHWL Q E S GG+LAD+MG+GKTIQ IAL++++ + K
Sbjct: 936 PEDMTVNLLKHQRLGLHWLLQVENSAKKGGLLADDMGLGKTIQAIALMLANRSEESKCKT 995
Query: 243 SLVVAPTVALMQWKNEIEQHTNK--KLSVYMYHGAN--RTNNLGDFKDVDVILTTYAVLE 298
+L+VAP L WK E+E K K + +++ G+ + + D D +L +Y L
Sbjct: 996 NLIVAPVSVLRVWKGELETKVKKRAKFTTFIFGGSGNGKVKHWRDLARYDAVLVSYQTLA 1055
Query: 299 SVYRK----QVYGFKRKAGTVKEKSLLHSIN---------------FYRVILDEAHNIKD 339
+ ++K ++ G + + V L+ + FYR++LDE NIK+
Sbjct: 1056 NEFKKHWPKKLDGEQNQLPAVPHIQALNRLKTSNEYYSPFFCNDSTFYRILLDEGQNIKN 1115
Query: 340 RTSNTAKAVNSLQTKKRWCLSGTPLQNRIGEMYSLIRFLNIEPFTRYYCKQCSCSSENWR 399
+ + +KA ++ RW LSGTP+QN + E+YSLIRFL I P+
Sbjct: 1116 KNTRASKACCTINGMYRWVLSGTPIQNSMDELYSLIRFLRIPPY---------------- 1159
Query: 400 FSDYLHCDDCGHVGMQHTNFFNHFMLKNVQKHGIEGPGLQSFQNIQTLLARIMLRRTKVE 459
H + F +N Q + + ++ LL IMLRR+K +
Sbjct: 1160 -----------HKEQRFKLDIGRFFQRNKQYQYDNEDRKNALRKVRVLLNAIMLRRSKAD 1208
Query: 460 RADD---LGLPPRIVTVRKDYFNEEEKDLYQSLYSDIKRKYNSYVEEGVVLNNYANIFTL 516
+ D L LPP+IV V + EE Y +L S + + +Y+++ TL
Sbjct: 1209 KIDGKPLLELPPKIVEVDESRLKGEELKFYTALESKNQALAKKLLNNS-TRGSYSSVLTL 1267
Query: 517 ITRMRQMADHPDLVL---KRLKGNNDNN-----------------------------PGV 544
+ R+RQ H +LV+ K+ +G N
Sbjct: 1268 LLRLRQACCHSELVVMGEKKAEGTKVANGKSFEDDWLRLYYKITHMSGEAQAQVITSMNS 1327
Query: 545 IICQLCDDEAEE---PIESKCHHRFCRLCINEYID--SFMADEKK-------LTCPVCH- 591
+ C C ++ E + + C H C CI +I+ S + KK + C C
Sbjct: 1328 MTCFWCMEQLEPEAMSVLTGCGHLICDTCIEPFIEESSMLPQAKKTKGGAFAIPCKDCQR 1387
Query: 592 -----IGLSIDLQQQALE---VDEEL-------FKKQSIVSRLKMGGKWRS---STKIEA 633
+S L Q + +E+L +KQ I + + S STKIE
Sbjct: 1388 LTNEKDIVSHKLYDQVINQGFTEEDLHAEYLSEMEKQKIQQKNVYVPNFESLEPSTKIEQ 1447
Query: 634 LVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLK-RAGFQTVKLQGSMTPTQRDQTIKY 692
++ + + + T K I+FSQFT+ +++E LK + F +K GSM +R I
Sbjct: 1448 CIQVIQRVFDESATEKIIIFSQFTTFFEILEHFLKNKLNFPYLKYIGSMNAQRRSDVINE 1507
Query: 693 FMENIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKIT 752
F + + L+S+KAG L L A+ V I+DP+WNP VE Q+ DR +RI Q + V++
Sbjct: 1508 FYRDPEKRILLISMKAGNSGLTLTCANHVVIVDPFWNPYVEEQAQDRCYRISQTKKVQVH 1567
Query: 753 RFCIEDSIESRIIELQEKKASMIHATINQDE-AAINRLTPADLQFLF 798
+ I+DS+E RI ELQ++K M+ + ++ + +N L +L FLF
Sbjct: 1568 KLFIKDSVEDRISELQKRKKEMVDSAMDPGKIKEVNSLGRRELGFLF 1614
>YLR032w [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 1169
Score = 258 bits (660), Expect = 2e-68
Identities = 202/691 (29%), Positives = 318/691 (45%), Gaps = 156/691 (22%)
Query: 215 GGVLADEMGMGKTIQTIALLMS-------------DITR--------------------K 241
GG+L+DEMG+GKT+ +L++S DI K
Sbjct: 527 GGILSDEMGLGKTVAAYSLVLSCPHDSDVVDKKLFDIENTAVSDNLPSTWQDNKKPYASK 586
Query: 242 PSLVVAPTVALMQWKNEIEQHTNKKLSVYMYHGANRTNNLGDFKDV--------DVILTT 293
+L+V P L QW NE + N S MYH N+ K + V+LTT
Sbjct: 587 TTLIVVPMSLLTQWSNEFTKANN---SPDMYHEVYYGGNVSSLKTLLTKTKTPPTVVLTT 643
Query: 294 YAVLESVYRKQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQT 353
Y ++++ + K G + V S L S+NFYR+I+DE HNI++RT+ T+KAV +LQ
Sbjct: 644 YGIVQNEWTKHSKG-RMTDEDVNISSGLFSVNFYRIIIDEGHNIRNRTTVTSKAVMALQG 702
Query: 354 KKRWCLSGTPLQNRIGEMYSLIRFLNIEPFTRYYCKQCSCSSENWRFSDYLHCDDCGHVG 413
K +W L+GTP+ NR+ ++YSL++FL ++P WR +Y
Sbjct: 703 KCKWVLTGTPIINRLDDLYSLVKFLELDP---------------WRQINYWK-------- 739
Query: 414 MQHTNFFNHFMLKNVQKHGIEGPGLQSFQNIQTLLARIMLRRTKVERADD----LGLPPR 469
T F KN + Q+F + +L ++LRRTK + D + LPP+
Sbjct: 740 ---TFVSTPFESKNYK---------QAFDVVNAILEPVLLRRTKQMKDKDGKPLVELPPK 787
Query: 470 IVTVRKDYFNEEEKDLYQSLYSDIKRKYNSYVEEGVVLNNYANIFTLITRMRQMADHPDL 529
V +++ F++ + LY+ L + S + G +L Y+ I I R+RQ+ HP L
Sbjct: 788 EVVIKRLPFSKSQDLLYKFLLDKAEVSVKSGIARGDLLKKYSTILVHILRLRQVCCHPGL 847
Query: 530 V-----------------------------------------------LKRLKGNNDNNP 542
+ ++RLK +N
Sbjct: 848 IGSQDENDEDLSKNNKLVTEQTVELDSLMRVVSERFDNSFSKEELDAMIQRLKVKYPDNK 907
Query: 543 GV--IICQLCDDEA---EEPIESKCHHRFCRLCINEYIDSFMADEKKLTCPVCHIGLS-- 595
+ C +C E ++ + ++C H FC C+ EYI+ + L CP C +
Sbjct: 908 SFQSLECSICTTEPMDLDKALFTECGHSFCEKCLFEYIEFQNSKNLGLKCPNCRNQIDAC 967
Query: 596 --IDLQQQALEVDEELFKKQSIVSRLKMGGKWRSSTKIEALVEELYNLRSDKRTIKSIVF 653
+ L Q FK S S+ S+KI AL++EL L+ + ++F
Sbjct: 968 RLLALVQTNSNSKNLEFKPYSPASK---------SSKITALLKELQLLQDSSAGEQVVIF 1018
Query: 654 SQFTSMLDLVEWRLKRAGFQTV----KLQGSMTPTQRDQTIKYFMENIHC--EVFLVSLK 707
SQF++ LD++E L + V K G ++ +R + F + ++ L+SLK
Sbjct: 1019 SQFSTYLDILEKELTHTFSKDVAKIYKFDGRLSLKERTSVLADFAVKDYSRQKILLLSLK 1078
Query: 708 AGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRIIEL 767
AGGV LNL AS +++DPWW+PS+E Q+ DR+HRIGQ VK+ RF I+DSIE +++ +
Sbjct: 1079 AGGVGLNLTCASHAYMMDPWWSPSMEDQAIDRLHRIGQTNSVKVMRFIIQDSIEEKMLRI 1138
Query: 768 QEKKASMIHATINQDEAAINRLTPADLQFLF 798
QEKK + I ++ DE + ++Q LF
Sbjct: 1139 QEKKRT-IGEAMDTDEDERRKRRIEEIQMLF 1168
>Hs19923174 [KL] KOG4439 RNA polymerase II transcription termination factor
TTF2/lodestar DEAD-box superfamily
Length = 1162
Score = 248 bits (634), Expect = 2e-65
Identities = 193/690 (27%), Positives = 313/690 (44%), Gaps = 124/690 (17%)
Query: 164 SELIDVFKKLQESPIRQVERAPQPDGMAIRLLPFQLEGLHWLQQQEESDYNGGVLADEMG 223
SE I + ES + A P G+ + LL Q + L WL +E GG+LAD+MG
Sbjct: 540 SEAIGQLHRSLESCPGETVVAEDPAGLKVPLLLHQKQALAWLLWRESQKPQGGILADDMG 599
Query: 224 MGKTIQTIALLMS-------------------------DITRKPSLVVAPTVALMQWKNE 258
+GKT+ IAL+++ D T +L++ P + WKNE
Sbjct: 600 LGKTLTMIALILTQKNQEKKEEKEKSTALTWLSKDDSCDFTSHGTLIICPASLIHHWKNE 659
Query: 259 IEQHTNK-KLSVYMYHGANRTNNLGDFKDVDVILTTYAVL--ESVYRKQVYGFKRKAGTV 315
+E+ N KL VY+YHG NR + D+++TTY+++ E KQ V
Sbjct: 660 VEKRVNSNKLRVYLYHGPNRDSRARVLSTYDIVITTYSLVAKEIPTNKQEAEIPGANLNV 719
Query: 316 KEKSL-LHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGTPLQNRIGEMYSL 374
+ S L I + R+ILDEAHN+K+ T+ AV LQ RW ++GTP+QN + +MYSL
Sbjct: 720 EGTSTPLLRIAWARIILDEAHNVKNPRVQTSIAVCKLQACARWAVTGTPIQNNLLDMYSL 779
Query: 375 IRFLNIEPFTRYYCKQCSCSSENWRFSDYLHCDDCGHVGMQHTNFFNHFMLKNVQKHGIE 434
++FL PF + N+ + ++
Sbjct: 780 LKFLRCSPFDEF----------------------------------------NLWRSQVD 799
Query: 435 GPGLQSFQNIQTLLARIMLRRTKVERADDLGLPPRIVTVRKDY-----FNEEEKDLYQSL 489
+ + + L ++LRRTK ++ D G P I+ RK +E+E+ +Y
Sbjct: 800 NGSKKGGERLSILTKSLLLRRTK-DQLDSTGRPLVILPQRKFQLHHLKLSEDEETVYNVF 858
Query: 490 YSDIKRKYNSYVEEGVVLNNYANIFTLITRMRQMADHPDLVLKRLKGNNDNNP-GVIICQ 548
++ + SY++ N + G + NNP + +
Sbjct: 859 FARSRSALQSYLKRHESRGNQS------------------------GRSPNNPFSRVALE 894
Query: 549 LCDDE------AEEPIESKCH-----HRFCRLCINEYIDSFMADEKKLTCPVCHIGLSID 597
+E A+ P S H R + C + + D +L GL +
Sbjct: 895 FGSEEPRHSEAADSPRSSTVHILSQLLRLRQCCCHLSLLKSALDPMELKGE----GLVLS 950
Query: 598 LQQQALEVDEELFKKQSIVSRLKMGGKW---------RSSTKIEALVEELYNLRSDKRTI 648
L++Q + + S + + G + R STKI +L+ EL ++ + +
Sbjct: 951 LEEQLSALTLSELRDSEPSSTVSLNGTFFKMELFEGMRESTKISSLLAELEAIQRNSASQ 1010
Query: 649 KSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQTIKYFMENIHCEVFLVSLKA 708
KS++ SQ+T+ML +V LK+ G + GS+ P QR ++ F + +V L+SL A
Sbjct: 1011 KSVIVSQWTNMLKVVALHLKKHGLTYATIDGSVNPKQRMDLVEAFNHSRGPQVMLISLLA 1070
Query: 709 GGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRIIELQ 768
GGV LNL + +F+LD WNPS+E Q+ DR++R+GQ + V I RF E ++E +I++LQ
Sbjct: 1071 GGVGLNLTGGNHLFLLDMHWNPSLEDQACDRIYRVGQQKDVVIHRFVCEGTVEEKILQLQ 1130
Query: 769 EKKASMIHATINQDEAAINRLTPADLQFLF 798
EKK + ++ ++ +LT A L+ LF
Sbjct: 1131 EKKKDLAKQVLSGSGESVTKLTLAHLRVLF 1160
>At3g16600 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 638
Score = 222 bits (566), Expect = 2e-57
Identities = 173/660 (26%), Positives = 289/660 (43%), Gaps = 153/660 (23%)
Query: 173 LQESPIRQVERAPQPDGMAIRLLPFQLEGLHWLQQQEESDYN--GGVLADEMGMGKTIQT 230
LQ+ + E+ P + + L+ Q L+W++++E+ + GG+LAD+ G+GKTI T
Sbjct: 32 LQDLKQPKTEKDLPPGVLTVPLMRHQKIALNWMRKKEKRSRHCLGGILADDQGLGKTIST 91
Query: 231 IALLMSDITRKPS-------------LVVAPTVALMQWKNEIEQHTNK--KLSVYMYHGA 275
I+L++ + S L+V P + QW E+++ + KLSV ++HG+
Sbjct: 92 ISLILLQKLKSQSKQRKRKGQNSGGTLIVCPASVVKQWAREVKEKVSDEHKLSVLVHHGS 151
Query: 276 NRTNNLGDFKDVDVILTTYAVLESVYRKQV----YGFKRKAGTVKEKSLLHS-------I 324
+RT + + DV++TTYA++ + + Y R ++ SL+ +
Sbjct: 152 HRTKDPTEIAIYDVVMTTYAIVTNEVPQNPMLNRYDSMRGRESLDGSSLIQPHVGALGRV 211
Query: 325 NFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGTPLQNRIGEMYSLIRFLNIEPFT 384
+ RV+LDEAH IK+ + AKA SL+ K+RWCL+GTP++N++ ++YS RFL P+
Sbjct: 212 RWLRVVLDEAHTIKNHRTLIAKACFSLRAKRRWCLTGTPIKNKVDDLYSYFRFLRYHPY- 270
Query: 385 RYYCKQCSCSSENWRFSDYLHCDDCGHVGMQHTNFFNHFMLKNVQKHGIEGPGLQSFQNI 444
C+S + R K I+ L ++ +
Sbjct: 271 ------AMCNSFHQRI-----------------------------KAPIDKKPLHGYKKL 295
Query: 445 QTLLARIMLRRTKVERADDLGLPPRIVTVRKDYFNEEEKDLYQSLYSDIKRKYNSYVEEG 504
Q +L IMLRRTK E Y+ L + + K+ Y +G
Sbjct: 296 QAILRGIMLRRTK------------------------EWSFYRKLELNSRWKFEEYAADG 331
Query: 505 VVLNNYANIFTLITRMRQMADHPDLV--LKRLKGNNDNNPGVII---------------- 546
+ + A + ++ R+RQ +HP LV + GV +
Sbjct: 332 TLHEHMAYLLVMLLRLRQACNHPQLVNGYSHSDTTRKMSDGVRVAPRENLIMFLDLLKLS 391
Query: 547 ---CQLCDDEAEEPIESKCHHRFCRLCINEYIDSFMADEKKLTCPV--CHIGLSIDLQQQ 601
C +C D ++P+ + C H FC C++ I+ TCP CH L D+
Sbjct: 392 STTCSVCSDPPKDPVVTLCGHVFCYECVSVNING-----DNNTCPALNCHSQLKHDV--- 443
Query: 602 ALEVDEELFKKQSIVSRLKMGGKWRSSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLD 661
E+ V N D ++V S+ ++
Sbjct: 444 ---------------------------VFTESAVRSCINDYDDPEDKNALVASRRVYFIE 476
Query: 662 LVEWRLKRAGFQTVKLQGSMTPTQRDQTIKYFMENIHCEVFLVSLKAGGVALNLCEASQV 721
R + + S T +D +I + C L+SLKAG + LN+ AS V
Sbjct: 477 --NPSCDRDSSVACRARQSRHSTNKDNSI----SGLVC-AMLMSLKAGNLGLNMVAASHV 529
Query: 722 FILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRIIELQEKKASMIHATINQ 781
+LD WWNP+ E Q+ DR HRIGQ R V +TR I++++E RI+ L E+K +++ + + +
Sbjct: 530 ILLDLWWNPTTEDQAIDRAHRIGQTRAVTVTRIAIKNTVEERILTLHERKRNIVASALGE 589
>7298963 [KL] KOG4439 RNA polymerase II transcription termination factor
TTF2/lodestar DEAD-box superfamily
Length = 1061
Score = 200 bits (509), Expect = 6e-51
Identities = 183/698 (26%), Positives = 311/698 (44%), Gaps = 115/698 (16%)
Query: 166 LIDVFKKLQESPIRQVERAPQPDGMAIRLLPFQLEGLHWLQQQEESDYNGGVLADEMGMG 225
L D+ L++ P +V A P G+ + L+ Q L W+ +E GG+LAD+MG+G
Sbjct: 412 LKDLHVSLEDLPGPEV-LAEDPVGLKVSLMNHQKHALAWMSWRERKLPRGGILADDMGLG 470
Query: 226 KTIQTIALLMS---------------------------------------DITRKPSLVV 246
KT+ I+ +++ D R +LVV
Sbjct: 471 KTLTMISSVLACKNGQEMSEGKDESSDSDSEDDKNKKRKSVTGWKSKGRKDTRRGGTLVV 530
Query: 247 APTVALMQWKNEIEQHTNK-KLSVYMYHGANRTNNLGDFKDVDVILTTYAVLESVYRKQV 305
P L QW++E+E ++ KL+V ++HG NR +D D+++TTY ++ +
Sbjct: 531 CPASLLRQWESEVESKVSRQKLTVCVHHGNNRETKGKYLRDYDIVVTTYQIVAREH---- 586
Query: 306 YGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGTPLQ 365
K S + + + R+ILDEAH +++ S ++ AV L+ K RW L+GTP+Q
Sbjct: 587 ----------KSLSAVFGVKWRRIILDEAHVVRNHKSQSSLAVCDLRGKYRWALTGTPIQ 636
Query: 366 NRIGEMYSLIRFLNIEPFTRYYCKQCSCSSENWRFSDYLHCDDCGHVGMQHTNFFNHFML 425
N+ ++Y+L++FL PF + + + W D+ G N ++
Sbjct: 637 NKELDVYALLKFLRCSPFDDLH------TWKKW-------IDNKSAGGQNRLNLLMKSLM 683
Query: 426 KNVQKHGIEGPG-LQSFQNIQTLLARIMLRRTKVERADDLGLPPRIVTVRKDYFN----- 479
K ++ G L S N + L I L + +++ + ++T + F
Sbjct: 684 LRRTKAQLQSDGKLNSLPNKELRLIEISLDK------EEMNVYQTVMTYSRTLFAQFLHQ 737
Query: 480 --EEEKDL-YQS-----LYSDIKRKYNSYVEEGVVLNNYA---------NIFTLITRMRQ 522
E E D Y+S Y+ IK +Y + A +I L+ R+RQ
Sbjct: 738 RAERETDFNYRSDANKPTYNQIKDPNGAYYKMHEKFARMAGSKKEVKSHDILVLLLRLRQ 797
Query: 523 MADHPDLVLKRLKGNNDNNPGVIICQLCDDEAEEPIESKCHHRFCRLCINEYIDSFMADE 582
+ HP L+ L G G +++ P E + +L I + D
Sbjct: 798 ICCHPGLIDAMLDGEESQTMGDH-----SSDSDTP-EIDLLAQLNKLAITDT----STDG 847
Query: 583 KKLTCPVCHIGLSIDLQQQAL-EVDEELFKKQSIVSRLKMGGKWRSSTKIEALVEELYNL 641
++ G + + + + + L K+ + V L R S+KI +++ L
Sbjct: 848 QQSVANAGDDGPPLLPDEARIAKASKNLLKRSNPVFNLH-----RPSSKINMVIQILKTS 902
Query: 642 RSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQTIKYFME-NIHCE 700
K+IV SQ+TS+LD++ L + G T+ L G++ R + F + N
Sbjct: 903 ILKSSDDKAIVVSQWTSVLDILRDHLSKDGVATLSLNGTIPVKNRQDIVNEFNDRNNQKR 962
Query: 701 VFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSI 760
V L+SL AGGV LNL A+ + +LD WNP +E Q+ DR++R+GQ + V I +F D++
Sbjct: 963 VLLLSLTAGGVGLNLIGANHLLLLDLHWNPQLEAQAQDRIYRVGQKKNVIIYKFMCVDTV 1022
Query: 761 ESRIIELQEKKASMIHATINQDEAAINRLTPADLQFLF 798
E RI LQ+KK + + + + ++LT DL+ LF
Sbjct: 1023 EQRIKGLQDKKLDLADGVLTGAKVS-SKLTIDDLKGLF 1059
>YFR038w [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 778
Score = 174 bits (440), Expect = 6e-43
Identities = 173/652 (26%), Positives = 285/652 (43%), Gaps = 107/652 (16%)
Query: 153 ERNTAKLYAHHSELIDVFKKLQESPIRQVERAPQPDGMAIR---------LLPFQLEGLH 203
E ++ K + D FKK +++ + PD AI+ L P+QLEGL+
Sbjct: 173 EHSSKKRKTKKKSITDFFKKQKKNEDTTTQNGA-PDDAAIKQPRLLKNCILKPYQLEGLN 231
Query: 204 WLQQQEESDYNGGVLADEMGMGKTIQTIALLMSDI---TRKPSLVVAPTVALMQWKNEIE 260
WL E+ NG +LADEMG+GKT+Q+IALL T+ P LV AP L W NE
Sbjct: 232 WLITLYENGLNG-ILADEMGLGKTVQSIALLAFIYEMDTKGPFLVTAPLSTLDNWMNEFA 290
Query: 261 QHTNKKLSVYMYHGAN----RTNNLGDF----KDVDVILTTYAVLESVYRKQVYGFKRKA 312
+ L V Y+G N R+ L +F +++T+Y ++
Sbjct: 291 KFA-PDLPVLKYYGTNGYKERSAKLKNFFKQHGGTGIVITSYEII--------------- 334
Query: 313 GTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGTPLQNRIGEMY 372
+++ L+ S N+ +I+DE H +K+ K + + T R L+GTPLQN + E++
Sbjct: 335 --LRDTDLIMSQNWKFLIVDEGHRLKNINCRLIKELKKINTSNRLLLTGTPLQNNLAELW 392
Query: 373 SLIRFLNIEPFTRYYCKQCSCSSENWRFSDYLHCDDCGHVGMQHTNFFNHFMLKNVQKHG 432
SL+ F+ + F + F+ + D ++ N + +QK+
Sbjct: 393 SLLNFIMPDIFADFEI-----------FNKWFDFDSLNLGSGSNSEALNKLINDELQKNL 441
Query: 433 IEGPGLQSFQNIQTLLARIMLRRTKVERADDLGLPPRIVTVRKDYFNEEEKDLYQSLYSD 492
I N+ T+L +LRR K ++ P R + + +EK L
Sbjct: 442 I--------SNLHTILKPFLLRRLKKVVLANILPPKREYIINCPMTSAQEKFYKAGLNGK 493
Query: 493 IKR-KYNSYVEEGVVLNNYANIFTLITRMRQMADHPDLVLKRLKGN------NDNNPGVI 545
+K+ + +++ LN+ +R D + +L GN N NP ++
Sbjct: 494 LKKTMFKELIKDFFTLNDEYIGHVSNRSIR------DFINYKLSGNETSNTDNKINPTLL 547
Query: 546 -ICQLCDDEAEEPIESKCHHRFCRLCINEYIDSFMADEKKLTCPVCHIGLSIDLQQQALE 604
+ +L + I +K + + + IDS P H
Sbjct: 548 QMDKLYKKNLQMEISNKKLQNM-MMQLRQIIDSTFL----FYFPYLH------------- 589
Query: 605 VDEELFKKQSIVSRLKMGGKWRSSTK-IEALVEELYNLRSDKRTIKSIVFSQFTSMLDLV 663
E+L ++ + LK GK + K I L+ E + K +++SQF +MLDL+
Sbjct: 590 -PEDL----TLETLLKTSGKLQILQKLIPPLISEGH---------KVLIYSQFVNMLDLI 635
Query: 664 EWRLKRAGFQTVKLQGSM-TPTQRDQTIKYFMENIHCEVFLVSLKAGGVALNLCEASQVF 722
E F T ++ GS+ T++DQ K+ +FL+S +A G+ +NL A V
Sbjct: 636 EDWCDLNSFATFRIDGSVNNETRKDQLEKFNSSKDKHNIFLLSTRAAGLGINLVGADTVV 695
Query: 723 ILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRIIELQEKKASM 774
+ D WNP V+ Q+ DR HRIGQ PV + R C +++IE I+ K ++
Sbjct: 696 LFDSDWNPQVDLQAMDRCHRIGQESPVIVYRLCCDNTIEHVILTRAANKRNL 747
>YPL082c [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 1867
Score = 171 bits (433), Expect = 4e-42
Identities = 161/642 (25%), Positives = 282/642 (43%), Gaps = 134/642 (20%)
Query: 187 PDGMAIRLLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLMSD-ITRK---- 241
P + L +Q +G++WL + +G +L D+MG+GKT+QTI ++ SD RK
Sbjct: 1265 PIAIKATLRKYQQDGVNWLAFLNKYHLHG-ILCDDMGLGKTLQTICIIASDQYLRKEDYE 1323
Query: 242 ----------PSLVVAPTVALMQWKNEIEQHTN-KKLSVYMYHGANRTNNLGDFKDVDVI 290
PSL++ P W+NE +Q+ K+ VY R D D+I
Sbjct: 1324 KTRSVESRALPSLIICPPSLTGHWENEFDQYAPFLKVVVYAGGPTVRLTLRPQLSDADII 1383
Query: 291 LTTYAVLESVYRKQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNS 350
+T+Y V + + ++L+ + +LDE H IK+ S AKAV
Sbjct: 1384 VTSYDVARN-----------------DLAVLNKTEYNYCVLDEGHIIKNSQSKLAKAVKE 1426
Query: 351 LQTKKRWCLSGTPLQNRIGEMYSLIRFL------NIEPFTRYYCKQCSCSSENWRFSDYL 404
+ R L+GTP+QN + E++SL FL + F + K + S +
Sbjct: 1427 ITANHRLILTGTPIQNNVLELWSLFDFLMPGFLGTEKMFQERFAKPIAASRNS------- 1479
Query: 405 HCDDCGHVGMQHTNFFNHFMLKNVQKHGIEGPGLQSFQNIQTLLARIMLRRTKVERADDL 464
K K + G+ + + + + MLRR K + D
Sbjct: 1480 ---------------------KTSSKE--QEAGVLALEALHKQVLPFMLRRLKEDVLSD- 1515
Query: 465 GLPPRIVTVRKDYFNEEEKDLYQSLYSDIKRKYNSYVEEGV----VLNNYANIFTLITRM 520
LPP+I+ +DY+ E DL + LY D +K + VE+ + + + +IF + M
Sbjct: 1516 -LPPKII---QDYYC-ELGDLQKQLYMDFTKKQKNVVEKDIENSEIADGKQHIFQALQYM 1570
Query: 521 RQMADHPDLVLKRLKGNNDNNPGVIICQLCDDEAEEPIESKCHHRFCRLCINEYIDSFMA 580
R++ +HP LVL + N+P + Q+ D + + L +++ I++
Sbjct: 1571 RKLCNHPALVL------SPNHPQ--LAQVQD-----------YLKQTGLDLHDIINAPKL 1611
Query: 581 DEKKLTCPVCHIGLSIDLQQQALEVDEELFKKQSIVSRLKMGGKWRSSTKIEALVEELYN 640
+ C IG D+ ++A + ++ F Q+++S+
Sbjct: 1612 SALRTLLFECGIG-EEDIDKKASQ--DQNFPIQNVISQ---------------------- 1646
Query: 641 LRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTV---KLQGSMTPTQRDQTIKYFMENI 697
++++F Q MLD+VE L + +V +L GS+ P R + ++ F E+
Sbjct: 1647 -------HRALIFCQLKDMLDMVENDLFKKYMPSVTYMRLDGSIDPRDRQKVVRKFNEDP 1699
Query: 698 HCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIE 757
+ L++ K GG+ LNL A V ++ WNP + Q+ DR HRIGQ + V + R +
Sbjct: 1700 SIDCLLLTTKVGGLGLNLTGADTVIFVEHDWNPMNDLQAMDRAHRIGQKKVVNVYRIITK 1759
Query: 758 DSIESRIIELQEKKASMIHATINQDEAAINRLTPADLQFLFN 799
++E +I+ LQ+ K ++ +NQ + + + L LF+
Sbjct: 1760 GTLEEKIMGLQKFKMNIASTVVNQQNSGLASMDTHQLLDLFD 1801
>SPAC25A8.01c [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 922
Score = 171 bits (432), Expect = 5e-42
Identities = 172/607 (28%), Positives = 272/607 (44%), Gaps = 111/607 (18%)
Query: 192 IRLLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIA---LLMSDITRKPSLVVAP 248
I+L +Q+ G++WL E G+LADEMG+GKT QTIA LLM P LV+AP
Sbjct: 385 IKLQDYQIIGINWLYLLYELKL-AGILADEMGLGKTCQTIAFFSLLMDKNINGPHLVIAP 443
Query: 249 TVALMQWKNEIEQHTNKKLSVYMYHGAN--------RTNNLGDFKDVDVILTTYAVLESV 300
+ W E + KL + +Y+G+ R N+ D +V+LTTY
Sbjct: 444 ASTMENWLREFAKFC-PKLKIELYYGSQVEREEIRERINSNKD--SYNVMLTTY------ 494
Query: 301 YRKQVYGFKRKAGTVK-EKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCL 359
R A T K ++ L + F + DE H +K+R S + + S+ R L
Sbjct: 495 ---------RLAATSKADRLFLRNQKFNVCVYDEGHYLKNRASERYRHLMSIPADFRVLL 545
Query: 360 SGTPLQNRIGEMYSLIRFLNIEPFTRYYCKQCSCSSENWRFSDYLHCDDCGHVGMQHTNF 419
+GTPLQN + E+ SL+ F+ F DY G++ +
Sbjct: 546 TGTPLQNNLKELISLLAFILPHVF------------------DY---------GLKSLDV 578
Query: 420 FNHFMLKNVQKHGIEGPGL--QSFQNIQTLLARIMLRRTKVERADDLGLPPRIVTVRKDY 477
F +K + E L Q + ++A +LRR K + D L RI+ +
Sbjct: 579 I--FTMKKSPESDFERALLSEQRVSRAKMMMAPFVLRRKKSQVLDALPKKTRIIEFCE-- 634
Query: 478 FNEEEKDLYQSLYSDIKRKYNSYVEEGVV---LNNYANIFT-------LITRMRQMADHP 527
F+EEE+ Y S K+ NS ++E V+ L+ AN+ ++ ++R++ADHP
Sbjct: 635 FSEEERRRYDDFAS--KQSVNSLLDENVMKTNLDTNANLAKKKSTAGFVLVQLRKLADHP 692
Query: 528 DLVLKRLKGNNDNNPGVIICQLCDDEAEEPIESKCHHRFCRLCINEYIDSFMADEKKLTC 587
+L R+ +D I+ Q+ EP K + L I E + +M+D
Sbjct: 693 --MLFRIHYKDD-----ILRQMAKAIMNEPQYKKAN----ELYIFEDM-QYMSD------ 734
Query: 588 PVCHIGLSIDLQQQALEVDEELFKKQSIVSRLKMGGKWRSSTKIEALVEELYNLRSDKRT 647
+E+ K SI S W +TK+ L + L N +
Sbjct: 735 ---------------IELHNLCCKFPSINSFQLKDEPWMDATKVRKLKKLLTNAVENGDR 779
Query: 648 IKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQTIKYFMENIHCEVFLVSLK 707
+ ++FSQFT +LD+++ +K + ++ GS R I F + VFL+S K
Sbjct: 780 V--VLFSQFTQVLDILQLVMKSLNLKFLRFDGSTQVDFRQDLIDQFYADESINVFLLSTK 837
Query: 708 AGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRIIEL 767
AGG +NL A+ V + D +NP + Q+ DR HR+GQ + V + +F ++D+IE I L
Sbjct: 838 AGGFGINLACANMVILYDVSFNPFDDLQAEDRAHRVGQKKEVTVYKFVVKDTIEEHIQRL 897
Query: 768 QEKKASM 774
K ++
Sbjct: 898 ANAKIAL 904
>SPAC20G8.08c [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 944
Score = 161 bits (408), Expect = 3e-39
Identities = 168/624 (26%), Positives = 268/624 (42%), Gaps = 116/624 (18%)
Query: 186 QPDGMA--IRLLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLMS---DITR 240
QP +A I L +Q+ GL+WL ++ +G +LADEMG+GKT Q I+ L S +
Sbjct: 404 QPSSIASGITLKSYQIVGLNWLCLMYKAKLSG-ILADEMGLGKTCQVISFLASLKEKGIQ 462
Query: 241 KPSLVVAPTVALMQWKNEIEQHTNKKLSVYMYHGA-----NRTNNLGDFKDVDVILTTYA 295
LVV P+ L W E E+ L V Y G N+ L D D DV++TTY
Sbjct: 463 NRHLVVVPSSTLGNWLREFEKFC-PSLRVESYSGTQSERINKRYYLMD-TDFDVLVTTYQ 520
Query: 296 VLESVYRKQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKK 355
+ +G+ ++S L F I DE H +K+R S K + ++
Sbjct: 521 LA--------------SGSRDDRSFLRKQRFDISIFDEGHYLKNRMSERYKHLMNIPANF 566
Query: 356 RWCLSGTPLQNRIGEMYSLIRFLNIEPFTRYYCKQCSCSSENWRFSDYLHCDDCGHVGMQ 415
R ++GTPLQN + E+ SL+ F+ + F N + D +
Sbjct: 567 RLLITGTPLQNNLKELISLLAFMLPKVF-----------DNNMQGLDII----------- 604
Query: 416 HTNFFNHFMLKNVQKHGIEGPGL--QSFQNIQTLLARIMLRRTKVERADDLGLPPRIVTV 473
+ +K IE L + +T++ +LRR K DL PP+I V
Sbjct: 605 -------YKIKTTSDGDIERAYLSQERISRAKTIMNPFILRRRKENVLSDL--PPKIQHV 655
Query: 474 RKDYFNEEEKDLYQSLYSDIKRKYNSYVEEGVVLNNYANIFTLITRMRQMADHPDLVLKR 533
+ E + LY S+ ++K N+ E ++ A + L+ R + + L+ KR
Sbjct: 656 EYCHMEETQLSLYLSVL-ELKNLVNANRENILMQLRKAALHQLLFRSQYNLETLSLMSKR 714
Query: 534 LKGNN---DNNPGVIICQLCDDEAEEPIESKCHHRFCRLCINEYIDSFMADEKKLTCPVC 590
+ + D NP I ++ E + + H +AD+ + P
Sbjct: 715 ILREDAYLDANPQYIF-----EDMEVMSDFELHK--------------LADQYRHLHPFA 755
Query: 591 HIGLSIDLQQQALEVDEELFKKQSIVSRLKMGGKWRSSTKIEALVEELYNLRSDKRTIKS 650
LK G W S K++ L L R ++R +
Sbjct: 756 ----------------------------LK-GKPWMDSAKVKKLCSLLKKSRPNERIL-- 784
Query: 651 IVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQTIKYFMENIHCEVFLVSLKAGG 710
+FSQFT +LD++E+ L + ++L GS R Q I F N + +VFL+S K+GG
Sbjct: 785 -IFSQFTQVLDILEYVLNTLDLEFLRLDGSTPVETRQQLIDDFHTNENYKVFLLSTKSGG 843
Query: 711 VALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRIIELQEK 770
+NL A+ V + D +NP + Q+ DR HR+GQ RPV + R +++IE I L
Sbjct: 844 FGINLTCANIVILFDCSFNPFDDMQAEDRAHRVGQTRPVHVYRLITKNTIEENIRRLANT 903
Query: 771 KASMIHATINQDEAAINRLTPADL 794
K + + +++ D I + +L
Sbjct: 904 KLT-LESSLTTDSEKIQKEISGEL 926
>At2g02090 [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 763
Score = 160 bits (406), Expect = 5e-39
Identities = 164/668 (24%), Positives = 283/668 (41%), Gaps = 135/668 (20%)
Query: 158 KLYAHHSELIDVFKKLQESPIRQVERAPQPDGMAIR-------LLPFQLEGLHWLQQQEE 210
+LY S + D + +++ S +R V + D L P+QL G+++L +
Sbjct: 170 ELYGTSSGVTDRYSEVETSTVRIVTQNDIDDACKAEDSDFQPILKPYQLVGVNFLLLLYK 229
Query: 211 SDYNGGVLADEMGMGKTIQTIA--LLMSDITRKPS--LVVAPTVALMQWKNEIEQHTNKK 266
G +LADEMG+GKTIQ I L+S + P LVV P L W+ E+ +
Sbjct: 230 KGIEGAILADEMGLGKTIQAITYLTLLSRLNNDPGPHLVVCPASVLENWERELRKWC-PS 288
Query: 267 LSVYMYHGA---------NRTNNLGDFKDVDVILTTYAVLESVYRKQVYGFKRKAGTVKE 317
+V YHGA N + G +V+L Y++ E +Q +
Sbjct: 289 FTVLQYHGAARAAYSRELNSLSKAGKPPPFNVLLVCYSLFERHSEQQ----------KDD 338
Query: 318 KSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSL--QTKKRWCLSGTPLQNRIGEMYSLI 375
+ +L + V++DEAH +KD+ S K + S+ +R L+GTPLQN + E++SL+
Sbjct: 339 RKVLKRWRWSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLL 398
Query: 376 RFLNIEPFTRYYCKQCSCSSENWRFSDYLHCDDCGHVGMQHTNFFNHFMLKNVQKHGIEG 435
F+ + FT +EN L+ +D
Sbjct: 399 EFMLPDIFT----------TENVDLKKLLNAED--------------------------- 421
Query: 436 PGLQSFQNIQTLLARIMLRRTKVERADDLGLPPRIVTVRKDYFNEEEKDLYQSLYSDIKR 495
+ ++++L +LRR K + L P+I V +++D Y+ + +
Sbjct: 422 --TELITRMKSILGPFILRRLKSDVMQQ--LVPKIQRVEYVLMERKQEDAYKEAIEEYRA 477
Query: 496 KYNSYVEE--GVVLNNYA------NIFTLITRMRQMADHPDLVLKRLKGNND-------- 539
+ + + LN+ A I T+ R++A+HP L+++R+ + D
Sbjct: 478 ASQARLVKLSSKSLNSLAKALPKRQISNYFTQFRKIANHP-LLIRRIYSDEDVIRIARKL 536
Query: 540 NNPGVIICQLCDDEAEEPIESKCHHRFCRLCINEYIDSFMADEKKLTCPVCHIGLSIDLQ 599
+ G + D E ++ F I++ + + ++ K T H+ L
Sbjct: 537 HPIGAFGFECSLDRVIEEVKG-----FNDFRIHQLLFQYGVNDTKGTLSDKHVML----- 586
Query: 600 QQALEVDEELFKKQSIVSRLKMGGKWRSSTKIEALVEELYNLRSDKRTIKSIVFSQFTSM 659
S K L E L +++ + ++FSQ+TSM
Sbjct: 587 ----------------------------SAKCRTLAELLPSMKKSGHRV--LIFSQWTSM 616
Query: 660 LDLVEWRLKRAGFQTVKLQGSMTPTQRDQTIKYFMENIHCEVFLVSLKAGGVALNLCEAS 719
LD++EW L G +L GS T R + F + L+S +AGG LNL A
Sbjct: 617 LDILEWTLDVIGVTYRRLDGSTQVTDRQTIVDTFNNDKSIFACLLSTRAGGQGLNLTGAD 676
Query: 720 QVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRIIELQEKK----ASMI 775
V I D +NP ++ Q+ DR HRIGQ +PV I R + +++ I E+ ++K A+++
Sbjct: 677 TVIIHDMDFNPQIDRQAEDRCHRIGQTKPVTIFRLVTKSTVDENIYEIAKRKLVLDAAVL 736
Query: 776 HATINQDE 783
+ ++ D+
Sbjct: 737 ESGVHVDD 744
>Hs21914927 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 838
Score = 155 bits (393), Expect = 2e-37
Identities = 162/656 (24%), Positives = 281/656 (42%), Gaps = 130/656 (19%)
Query: 164 SELIDVFKKLQESPIRQVERAPQP-------DGMAIRLLPFQLEGLHWLQQQEESDYNGG 216
SE + K P+R+ P P G +R +Q+EG+ WL+ E+ NG
Sbjct: 188 SETVRQNTKFFFDPVRKCNGQPVPFQQPKHFTGGVMRW--YQVEGMEWLRMLWENGING- 244
Query: 217 VLADEMGMGKTIQ---TIALLMSDITRKPSLVVAPTVALMQWKNEIEQHTNKKLSVYMYH 273
+LADEMG+GKT+Q TIAL++ P LV P L W E ++ T + +YH
Sbjct: 245 ILADEMGLGKTVQCIATIALMIQRGVPGPFLVCGPLSTLPNWMAEFKRFT-PDIPTMLYH 303
Query: 274 GA---------NRTNNLGDFKDVDVILTTYAVLESVYRKQVYGFKRKAGTVKEKSLLHSI 324
G N G + V++T++ + +++++ L
Sbjct: 304 GTQEERQKLVRNIYKRKGTLQIHPVVITSFEI-----------------AMRDRNALQHC 346
Query: 325 NFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGTPLQNRIGEMYSLIRFLNIEPFT 384
+ +I+DE H IK+ + + + L+GTPLQN + E++SL+ FL + F
Sbjct: 347 YWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFD 406
Query: 385 RYYCKQCSCSSENWRFSDYLHCDDCGHVGMQHTNFFNHFMLKNVQKHGIEGPGLQSFQNI 444
S E+W F + ++ + + + QN+
Sbjct: 407 DLK------SFESW------------------------FDITSLSETAEDIIAKEREQNV 436
Query: 445 QTLLARIM----LRRTKVERADDLGLPPRIVTVRKDYFNEEEKDLYQSLYS-DIKRKYNS 499
+L +I+ LRR K + A L +PP+ V +++++ Y ++ + I + S
Sbjct: 437 LHMLHQILTPFLLRRLKSDVA--LEVPPKREVVVYAPLSKKQEIFYTAIVNRTIANMFGS 494
Query: 500 YVEEGVVLN-------------NYANIFTLITRMRQMADHPDLVLKRLKGNNDNNPGVII 546
+E + L+ NY+ I + ++ + +++ D V+
Sbjct: 495 SEKETIELSPTGRPKRRTRKSINYSKIDDFPNELEKL-------ISQIQPEVDRERAVV- 546
Query: 547 CQLCDDEAEEPIESKCHHRFCRLCINEYIDSFMADEKKLTCPVCHIGLSIDLQQQALEVD 606
E P+ES+ +N + + M +K I ID Q ++D
Sbjct: 547 ------EVNIPVESE---------VNLKLQNIMMLLRKCCNHPYLIEYPIDPVTQEFKID 591
Query: 607 EELFKKQSIVSRLKMGGKWRSSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWR 666
EEL GK+ ++ ++ EL KR K ++FSQ TSMLD++
Sbjct: 592 EELVTNS---------GKFLI---LDRMLPEL-----KKRGHKVLLFSQMTSMLDILMDY 634
Query: 667 LKRAGFQTVKLQGSMTPTQRDQTIKYFMENIHCEVFLVSLKAGGVALNLCEASQVFILDP 726
F +L GSM+ ++R++ + F + +FLVS +AGG+ +NL A V I D
Sbjct: 635 CHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINLTAADTVIIYDS 694
Query: 727 WWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRIIELQEKKASMIHATINQD 782
WNP + Q+ DR HRIGQ +PV + R ++I+ +I+E K + I+++
Sbjct: 695 DWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLIIHKN 750
>YAL019w [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 1131
Score = 155 bits (391), Expect = 3e-37
Identities = 157/614 (25%), Positives = 267/614 (42%), Gaps = 121/614 (19%)
Query: 192 IRLLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALL--MSDITRK-PSLVVAP 248
I L +Q G++WL ++ + +LAD+MG+GKT Q I+ + I P LVV P
Sbjct: 570 ISLKDYQQTGINWLNLLYQNKMSC-ILADDMGLGKTCQVISFFAYLKQINEPGPHLVVVP 628
Query: 249 TVALMQWKNEIEQHTNKKLSVYMYHGANRTNNLGDFKDV--------DVILTTYAVLESV 300
+ L W E ++ L + Y+G+ + + +D+ DVI+TTY +
Sbjct: 629 SSTLENWLREFQKFA-PALKIEPYYGSLQERE--ELRDILERNAGKYDVIVTTYNLA--- 682
Query: 301 YRKQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLS 360
AG + S L + NF V+ DE H +K+ TS + ++ R L+
Sbjct: 683 -----------AGNKYDVSFLKNRNFNVVVYDEGHMLKNSTSERFAKLMKIRANFRLLLT 731
Query: 361 GTPLQNRIGEMYSLIRFL-------NIEPFTRYYCKQCSCSSENWRFSDYLHCDDCGHVG 413
GTPLQN + E+ SL+ F+ E F + ++ + +N + L
Sbjct: 732 GTPLQNNLKELMSLLEFIMPNLFISKKESFDAIFKQRAKTTDDNKNHNPLL--------- 782
Query: 414 MQHTNFFNHFMLKNVQKHGIEGPGLQSFQNIQTLLARIMLRRTKVERADDLGLPPRIVTV 473
++ +T++ +LRR K + L PP+ +
Sbjct: 783 -----------------------AQEAITRAKTMMKPFILRRRKDQVLKHL--PPKHTHI 817
Query: 474 RKDYFNEEEKDLYQSLYSDIKRKYNSYVEEGVVLNNY--------ANIFTLITRMRQMAD 525
+ N +K +Y I ++ +++G + + ++ LI +R+ +
Sbjct: 818 QYCELNAIQKKIYDKEIQ-IVLEHKRMIKDGELPKDAKEKSKLQSSSSKNLIMALRKASL 876
Query: 526 HPDLVLKRLKGNNDNNPGVIICQLCDDEAEEPIESKCHHRFCRLCINEYID---SFMADE 582
HP L+ + + + II ++ D +EP ++ ++ EYI S+M D
Sbjct: 877 HP-LLFRNIYNDK------IITKMSDAILDEPAYAENGNK-------EYIKEDMSYMTDF 922
Query: 583 K--KLTCPVCHIGLSIDLQQQALEVDEELFKKQSIVSRLKMGGKWRSSTKIEALVEELYN 640
+ KL C L + L DE W S KI+AL + L
Sbjct: 923 ELHKLCC-----NFPNTLSKYQLHNDE-----------------WMQSGKIDALKKLLKT 960
Query: 641 LRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQTIKYFMENIHCE 700
+ DK+ K ++FS FT +LD++E L ++ ++L GS R I F E+
Sbjct: 961 IIVDKQE-KVLIFSLFTQVLDILEMVLSTLDYKFLRLDGSTQVNDRQLLIDKFYEDKDIP 1019
Query: 701 VFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSI 760
+F++S KAGG +NL A+ V I D +NP + Q+ DR HR+GQ + V IT +DSI
Sbjct: 1020 IFILSTKAGGFGINLVCANNVIIFDQSFNPHDDRQAADRAHRVGQTKEVNITTLITKDSI 1079
Query: 761 ESRIIELQEKKASM 774
E +I +L + K ++
Sbjct: 1080 EEKIHQLAKNKLAL 1093
>ECU09g0410 [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26
(contains SNF2 family DNA-dependent ATPase domain)
Length = 695
Score = 155 bits (391), Expect = 3e-37
Identities = 166/631 (26%), Positives = 282/631 (44%), Gaps = 140/631 (22%)
Query: 149 ISPFERNTAKL---YAHHSELI-DVFKKLQESPIRQVERAPQPDGMAIRLLPFQLEGLHW 204
I F+ AK Y H + D F + + ++ E P + L P+Q +G+ W
Sbjct: 102 IKVFDAKRAKAVEKYCRHMGIEEDEFSEHIKKEGKECEGFSVPGFLWSSLFPYQQDGVRW 161
Query: 205 LQQQEESDYNGGVLADEMGMGKTIQTI----ALLMSDITRKPSLVVAPTVALMQWKNEIE 260
+ + D GGVLAD+MG+GKTIQ I ALL S + K +L++ P + QW +E +
Sbjct: 162 MLRLYR-DEKGGVLADDMGLGKTIQVIVFLGALLHSRVVSK-ALILCPATIVSQWMDEWK 219
Query: 261 QHTNKKLSVYMYHGANRTNNLGDFKDVDVILTTYAVLESVYRKQVYGFKRKAGTVKEKSL 320
+ V ++ G F + D E VY FK AG K+
Sbjct: 220 RFYP---FVRIFFG---------FPNEDC--------EGVYLMSYEKFK--AGV---KNF 254
Query: 321 LHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGTPLQNRIGEMYSLIRFLNI 380
L + +ILDE H IK++ + +V +++ R+ LSGTP+QN +GE++S+ F+N
Sbjct: 255 LWDV----LILDEGHRIKNKNAQITLSVKKARSRGRFVLSGTPIQNNLGELWSIFDFVNP 310
Query: 381 EPFTRYYCKQCSCSSENWRFSDYLHCDDCGHVGMQHTNFFNHFMLKNVQKHGIEGPGLQS 440
+ +S N F + + G ++ + + ++ +H +
Sbjct: 311 GLLGSH-------TSFNEEFEEVIR-----RGGYRNAS---NLQVEKAYRHSLM------ 349
Query: 441 FQNIQTLLARIMLRRTKVERADDLGLPPRIVTVRKDYFNEEEKDLYQSLYSDIKRKYNSY 500
+++L+ +LRRTK + + L ++E+K ++ SL YN
Sbjct: 350 ---LRSLIEPYILRRTKSQVSHKLP-------------SKEDKIVFCSLTPAQIELYNRV 393
Query: 501 VEEG---VVLNNYANIFTLITRMRQMADHPDLVLKRLKGNNDNNPGVIICQLCDDEAEEP 557
+E VL AN+ + I+ +R++ +HP L+ R G +++ C++EA
Sbjct: 394 LESKHIMKVLTGKANLLSGISMLRKVCNHPRLLFPRKLGVSED---------CEEEA--- 441
Query: 558 IESKCHHRFCRLCINEYIDSFMADEKKLTCPVCHIGLSIDLQQQALEVDEELFKKQSIVS 617
+DEK G L+ +V +L
Sbjct: 442 ----------------------SDEKN--------GEDEALELPGADVSYDLVS------ 465
Query: 618 RLKMGGKWRSSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKL 677
SS KI+ LV+ L RS+ K +VFSQ MLD++E +++ + +++
Sbjct: 466 ---------SSCKIKILVDLLKKWRSEGN--KVLVFSQTIRMLDIIERCVRK--YTYLRM 512
Query: 678 QGSMTPTQRDQTIKYFMENIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSG 737
G + R + F E+ +FL++ K GG+ LNL AS++ I DP WNPS + Q+
Sbjct: 513 DGRTPTSSRPGLVDRFNEDEDVFLFLLTTKVGGLGLNLTGASRIVIYDPDWNPSTDTQAK 572
Query: 738 DRVHRIGQFRPVKITRFCIEDSIESRIIELQ 768
+R R GQ + V+I RF +D+IE ++ + Q
Sbjct: 573 ERAWRYGQKKGVEIYRFVCKDTIEEKVYQKQ 603
>SPBC1826.01c [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 635
Score = 150 bits (378), Expect = 1e-35
Identities = 158/645 (24%), Positives = 264/645 (40%), Gaps = 122/645 (18%)
Query: 180 QVERAPQPDGMAIRLLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLMSD-- 237
+VE P ++ L +Q EG++WL + + +G +L D+MG+GKT+QTI ++ SD
Sbjct: 26 KVEAFSIPVPISADLRKYQQEGVNWLAFLNKYELHG-ILCDDMGLGKTLQTICIVASDHY 84
Query: 238 -------------ITRKPSLVVAPTVALMQWKNEIEQHTN-KKLSVYMYHGANRTNNLGD 283
PSL+V P+ W+ E+ + K+S Y+ A R
Sbjct: 85 NRQKLFEESGSPKFAHVPSLIVCPSTLAGHWQQELSTYAPFLKVSAYVGPPAERAKIRSK 144
Query: 284 FKDVDVILTTYAVLESVYRKQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSN 343
K DV++T+Y + + + L I++ +LDE H IK+ +
Sbjct: 145 MKKSDVVVTSYDICRN-----------------DVDELVKIDWNYCVLDEGHVIKNARAK 187
Query: 344 TAKAVNSLQTKKRWCLSGTPLQNRIGEMYSLIRFLNIEPFTRYYCKQCSCSSENWRFSDY 403
KAV SL++ R LSGTP+QN + E+ W D+
Sbjct: 188 LTKAVKSLRSYHRLILSGTPIQNNVLEL--------------------------WSLFDF 221
Query: 404 LHCDDCGHVGMQHTNFFNHFMLKNVQKHGIEGP------GLQSFQNIQTLLARIMLRRTK 457
L G +G + T F F+ + G + + I + MLRR K
Sbjct: 222 LMP---GFLGTEKT-FQERFVRPIAASRDAKSSSKERERGTLALEAIHKQVLPFMLRRLK 277
Query: 458 VERADDLGLPPRIVTVRKDYFNEEEKDLYQSLYSDIKRKYNSYVEEGVVLNNYANIFTLI 517
+ DL PP+I+ +DY+ + SD++RK +LN++ + +
Sbjct: 278 EDVLADL--PPKII---QDYYCD---------MSDLQRK---------LLNDFVSQLNIN 314
Query: 518 TRMRQMADHPDLVLKRLKGNNDNNPGVIICQLCDDEAEEPIESKCHHRFCRLCINEYIDS 577
+ ++ K + +A + + C+H L + E
Sbjct: 315 EELEDDETEKTQGTRKKKSQKAHI----------FQALQYMRKLCNHP--ALILTEKHPK 362
Query: 578 FMADEKKLTCPVCHIGLSIDLQQQALEVDEELFKKQSIVSRLKMGGKWRSSTKIEALVEE 637
A K+L + L + K ++ L+ G SS +
Sbjct: 363 RNAIVKQLA-----------KENSGLHDLKHAPKLTALGQLLRDCGLGNSSVNSNGIDSA 411
Query: 638 LYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTV---KLQGSMTPTQRDQTIKYFM 694
L N S+ R + +F Q MLD+VE L +A V +L GS+ PT+R + + F
Sbjct: 412 LTNAVSEHRVL---IFCQLKDMLDMVEKDLLQATMPDVTYMRLDGSVEPTKRQEAVTKFN 468
Query: 695 ENIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRF 754
+ +V L++ GG+ LNL A V ++ WNP + Q+ DR HRIGQ + V + R
Sbjct: 469 NDPSIDVLLLTTHVGGLGLNLTGADTVIFVEHDWNPMRDLQAMDRAHRIGQKKVVNVYRL 528
Query: 755 CIEDSIESRIIELQEKKASMIHATINQDEAAINRLTPADLQFLFN 799
+E +I+ LQ K ++ +NQ A ++ + + LFN
Sbjct: 529 ITRGCLEEKIMGLQRFKMNVASTVVNQQNAGLSSIGTDQILDLFN 573
>At3g54280 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 2049
Score = 149 bits (376), Expect = 2e-35
Identities = 154/649 (23%), Positives = 274/649 (41%), Gaps = 140/649 (21%)
Query: 190 MAIRLLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLMSDITRK-------- 241
+ ++L +Q EG++WL + +G +L D+MG+GKT+Q A++ SD +
Sbjct: 1440 LKVQLRRYQQEGINWLGFLKRFKLHG-ILCDDMGLGKTLQASAIVASDAAERRGSTDELD 1498
Query: 242 --PSLVVAPTVALMQWKNEIEQHTNKKL-SVYMYHGA--NRTNNLGDFKDVDVILTTYAV 296
PS++V P+ + W EIE++ + L SV Y G+ +R + F + +VI+T+Y V
Sbjct: 1499 VFPSIIVCPSTLVGHWAFEIEKYIDLSLLSVLQYVGSAQDRVSLREQFNNHNVIITSYDV 1558
Query: 297 LESVYRKQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKR 356
+ K+ L ++ ILDE H IK+ S AV L+ + R
Sbjct: 1559 VR-----------------KDVDYLTQFSWNYCILDEGHIIKNAKSKITAAVKQLKAQHR 1601
Query: 357 WCLSGTPLQNRIGEMYSLIRFLNIEPFTRYYCKQCSCSSENWRFSDYLHCDDCGHVGMQH 416
LSGTP+QN I E++SL D+L G
Sbjct: 1602 LILSGTPIQNNIMELWSLF--------------------------DFLMPGFLGTERQFQ 1635
Query: 417 TNFFNHFMLKNVQKHGIEGP--GLQSFQNIQTLLARIMLRRTKVERADDLGLPPRIVTVR 474
++ + K + G+ + + + + +LRRTK E DL P +I+ R
Sbjct: 1636 ASYGKPLLAARDPKCSAKDAEAGVLAMEALHKQVMPFLLRRTKEEVLSDL--PEKIIQDR 1693
Query: 475 KDYFNEEEKDLYQSLY-SDIKRKYNSYVE-EGVVLNNYANI---------FTLITRMRQM 523
+ + LY+ S K++ +S ++ +G + A++ F + + ++
Sbjct: 1694 YCDLSPVQLKLYEQFSGSSAKQEISSIIKVDGSADSGNADVAPTKASTHVFQALQYLLKL 1753
Query: 524 ADHPDLVLKRLKGNNDNNPGVIICQLCDDEAEEPIESKCHHRFCRLCINEYIDSFMADEK 583
HP LVL D+ EP+ S IN D
Sbjct: 1754 CSHPLLVL-------------------GDKVTEPVASDL-----AAMINGCSD------- 1782
Query: 584 KLTCPVCHIGLSIDLQQQALEVDEELFKKQSIVSRLKMGGKWRSSTKIEALVEELYNLRS 643
I + ++ +L Q I+ +G SS ++ +
Sbjct: 1783 ------------IITELHKVQHSPKLVALQEILEECGIGSDASSSDGTLSVGQH------ 1824
Query: 644 DKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTV---KLQGSMTPTQRDQTIKYFMENIHCE 700
+ ++F+Q ++LD++E L +A ++V +L GS+ P +R + +K F + +
Sbjct: 1825 -----RVLIFAQHKALLDIIEKDLFQAHMKSVTYMRLDGSVVPEKRFEIVKAFNSDPTID 1879
Query: 701 VFLVSLKAGGVALNLCEASQVFILDPWWNPSVE-----------WQSGDRVHRIGQFRPV 749
V L++ GG+ LNL A + ++ WNP + WQ+ DR HR+GQ R V
Sbjct: 1880 VLLLTTHVGGLGLNLTSADTLVFMEHDWNPMRDHQFANIELNKLWQAMDRAHRLGQKRVV 1939
Query: 750 KITRFCIEDSIESRIIELQEKKASMIHATINQDEAAINRLTPADLQFLF 798
+ R + ++E +++ LQ+ K S+ + IN + A++ + L LF
Sbjct: 1940 NVHRLIMRGTLEEKVMSLQKFKVSVANTVINAENASMKTMNTDQLLDLF 1988
>CE16277 [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 1038
Score = 148 bits (374), Expect = 3e-35
Identities = 152/593 (25%), Positives = 255/593 (42%), Gaps = 108/593 (18%)
Query: 197 FQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALL--MSDITRK-PSLVVAPTVALM 253
+QL G+ WL D N +L DEMG+GKTIQ +A L + I + P L+V P+ +
Sbjct: 397 YQLIGVKWLIMMYNKDLNA-ILGDEMGLGKTIQIVAFLSYLKQIGKTGPHLIVVPSSTIE 455
Query: 254 QWKNEIEQHTNKKLSVYMYHGA-----NRTNNLGDFKD-VDVILTTYAVLESVYRKQVYG 307
W E + + + Y+G+ + + + KD +DVILTTY ++ S
Sbjct: 456 NWIGEFHKWC-PSIQLLTYYGSQDERKHLRHRVKKQKDHIDVILTTYNMVTS-------- 506
Query: 308 FKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGTPLQNR 367
+K + + VI DE H +K+ S + + ++ KK+ L+GTPLQN
Sbjct: 507 ------KSDDKKFFKNFSLNYVIYDEGHMLKNCDSERYRGLMKVKGKKKILLTGTPLQNN 560
Query: 368 IGEMYSLIRFLNIEPFTRYYCKQCSCSSENWRFSDYLHCDDCGHVGMQHTNFFNHFMLKN 427
+ E+ SL+ F+ + F +Y C+D H+ KN
Sbjct: 561 LIELISLMYFVLSKVFNKY-------------------CEDITHLLQHFKQLGPALDTKN 601
Query: 428 VQKHGIEGPGLQSFQNIQTLLARIMLRRTKVERADDLGLPPRIVTVRKDYFNEEEKDLYQ 487
+ + + + +L +LRR K + L P + + + + +K LY
Sbjct: 602 KALYQQD-----RIEEAKAILQPYILRRLKNQVLGSL--PSKSEQIIEVEMKKPQKQLYD 654
Query: 488 SLYSDIKRKYNSYVEEGVVLNNYANIFTLITRMRQMADHPDLVLKRLKGNNDNNPGVIIC 547
++ +++ S G ++ R+RQ A+HP L R D I
Sbjct: 655 NIVEALQQSEESGDSYGSLM-----------RLRQAANHP---LLRRSEYTDQKLDKIAK 700
Query: 548 QLCDDEAEEPIESKCHHRFCRLC------INEYIDSFMADEKKLTCPVCHIGLSIDLQQQ 601
LC E + + K H L I++ + F K L
Sbjct: 701 MLCLRE-KAYADKKWQHVSEDLAWLSDIKIHQLCERFRCTSKFL---------------- 743
Query: 602 ALEVDEELFKKQSIVSRLKMGGKWRSSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLD 661
++E+L LK G +++ ++ E+ K+ K ++FSQFTSMLD
Sbjct: 744 ---LNEQL--------ALKSG----KCEQLDVMLPEI-----QKKGDKVLIFSQFTSMLD 783
Query: 662 LVEWRLKRAGFQTVKLQGSMTPTQRDQTIKYFMENIHCEVFLVSLKAGGVALNLCEASQV 721
++E L G+ +L G R + I F + VFL+S +AGG+ +NL A+ +
Sbjct: 784 ILEVYLNIRGYSYKRLDGQTPVLDRQEMINEFNLSKDLFVFLLSTRAGGLGINLTSANHI 843
Query: 722 FILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRIIELQEKKASM 774
I D +NP + Q+ DR HR+GQ +PV +TR + ++E ++ L +KK +
Sbjct: 844 IIHDIDFNPYNDKQAEDRCHRMGQEKPVHVTRLVSKGTVEVGMLALAKKKLQL 896
>Hs14149730 [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 1026
Score = 147 bits (372), Expect = 5e-35
Identities = 154/624 (24%), Positives = 259/624 (40%), Gaps = 115/624 (18%)
Query: 191 AIRLLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLM---SDITRKPSLVVA 247
++ L P+Q GL+WL + NG +LADEMG+GKTIQ IA L + P L+V
Sbjct: 494 SLSLKPYQKVGLNWLALVHKHGLNG-ILADEMGLGKTIQAIAFLAYLYQEGNNGPHLIVV 552
Query: 248 PTVALMQWKNEIEQHTNKKLSVYMYHGAN------RTNNLGDFKDVDVILTTYAVLESVY 301
P + W E+ L V Y+G+ R N ++D +VI+TTY S
Sbjct: 553 PASTIDNWLREVNLWC-PTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAIS-- 609
Query: 302 RKQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSG 361
+ ++SL + I DE H +K+ S + + ++ R L+G
Sbjct: 610 ------------SSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTG 657
Query: 362 TPLQNRIGEMYSLIRFLNIEPFTRYYCKQCSCSSENWRFSDYLHCDDCGHVGMQHTNFFN 421
TP+QN + E+ SL+ F+ F+ S S FS
Sbjct: 658 TPVQNNLLELMSLLNFVMPHMFS------SSTSEIRRMFSS------------------- 692
Query: 422 HFMLKNVQKHGIEGPGLQSFQNIQTLLARIMLRRTKVERADDLGLPPRIVTVRKDYFNEE 481
K+ + I + + + ++ +LRR K E LPP+ + +E+
Sbjct: 693 --KTKSADEQSIYEK--ERIAHAKQIIKPFILRRVKEEVLKQ--LPPKKDRIELCAMSEK 746
Query: 482 EKDLYQSLYSDIKRKYNSYVEEGVVLNNYANIFTLITRMRQMADHPDLVLKRLKGNNDNN 541
++ LY L++ +K+ N+ L + ++ ++R+MA+HP L +
Sbjct: 747 QEQLYLGLFNRLKKSINN-------LEKNTEMCNVMMQLRKMANHPLLHRQYYTAEKLKE 799
Query: 542 PGVII------CQLCDDEAEEPIESKCHHRFCRLCIN-EYIDSFMADEKKLTCPVCHIGL 594
++ C+ D E +E LC +I++F D
Sbjct: 800 MSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLD------------- 846
Query: 595 SIDLQQQALEVDEELFKKQS-IVSRLKMGGKWRSSTKIEALVEELYNLRSDKRTIKSIVF 653
L +D F+ I+S LK G + ++F
Sbjct: 847 ------MDLILDSGKFRVLGCILSELKQKGD------------------------RVVLF 876
Query: 654 SQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQTIKYFMENIHCEVFLVSLKAGGVAL 713
SQFT MLD++E LK + ++L G ++R I F ++ VFL+S KAGG+ +
Sbjct: 877 SQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGI 936
Query: 714 NLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRIIELQEKKAS 773
NL A+ V + D NP + Q+ DR HR+GQ + V + + + +IE ++++ ++K
Sbjct: 937 NLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLK 996
Query: 774 MIHATINQDEAAINRLTPADLQFL 797
+ DE + PAD+ L
Sbjct: 997 LEQDMTTVDEGDEGSM-PADIATL 1019
>ECU01g0350 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1251
Score = 145 bits (365), Expect = 3e-34
Identities = 161/630 (25%), Positives = 253/630 (39%), Gaps = 135/630 (21%)
Query: 170 FKKLQESPIRQVERAPQPDGMAIRLLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQ 229
F K +ESP+ + RL +QLEGL+WL + + ++ADEMG+GKT+Q
Sbjct: 287 FIKYEESPVFKGGN---------RLREYQLEGLNWLLNRWYYKQSC-IMADEMGLGKTVQ 336
Query: 230 TIALLMSDITR----KPSLVVAPTVALMQWKNEIEQHTNKKLSVYM-----------YHG 274
++ + + T+ P LVV P + W+ E E T+ ++ Y Y
Sbjct: 337 SVTFINTLFTKYDYCAPVLVVTPLSIIPHWEREFEAWTDLRVLKYHENRPGRALIAEYEF 396
Query: 275 ANRTNNLGDFKDVDVILTTYAVLESVYRKQVYGFKRKAGTVKEKSLLHSINFYRVILDEA 334
+ NNL + + DV++TTY + + E+ L +F I DEA
Sbjct: 397 VLKKNNL-EIRLFDVLITTYDTV-----------------MAEQEHLSQFHFSVGIFDEA 438
Query: 335 HNIKDRTSNTAKAVNSLQTKKRWCLSGTPLQNRIGEMYSLIRFLNIEPFTRYYCKQCSCS 394
H +K+ S A + +L+ + LSGTPLQN I E++SL+ F I+P
Sbjct: 439 HRLKNAKSKAATILRTLKFNHKVLLSGTPLQNNISELWSLLNF--IDPM----------- 485
Query: 395 SENWRFSDYLHCDDCGHVGMQHTNFFNHFMLKNVQKHGIEGPGLQSFQNIQTLLARIMLR 454
RFS H F F ++N+ + +Q LL +MLR
Sbjct: 486 ----RFSSLPH-------------FLGEFKMENI----------NDVEKLQGLLRPLMLR 518
Query: 455 RTKVERADDLGLPPRIVTVRKDYFNEEEKDLYQSLYSDIKRKYNSYVEEGVVLNNYANIF 514
R K + V K +EE + +L KR Y + +E+ +
Sbjct: 519 RMKED-------------VEKSIPTKEETIIEVALTMIQKRFYRAILEKNIEF------- 558
Query: 515 TLITRMRQMADHPDLVLKRLKGNNDNNPGVIICQLCDDEAEEPIESKCHHRFCRLCINEY 574
KG ++ P ++ + + C H + E
Sbjct: 559 ------------------LTKGGKESAPNLLNVMM-------ELRKCCIHPYLIKGAEEQ 593
Query: 575 IDSFMADEKKLTCPVCHIGLSIDLQQQALEVDEELFKKQSIVSRLKMGGK--WRSSTKIE 632
I S +K+ I L + L DE S++S + K +SS K+
Sbjct: 594 ILSGYLKKKRERSKAEGAENDITLTSEVLNEDEHQ-DGNSVISDIDEYYKIFIQSSGKLV 652
Query: 633 ALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQTIKY 692
L + L L+ K ++FSQ T LDL+ L ++ ++ G R I
Sbjct: 653 LLDKLLGKLKDGH---KVLIFSQMTRCLDLLAEYLAYRKYKYERIDGGARTENRQAAIDR 709
Query: 693 FMENI-HCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKI 751
F + VFL+S +AGGV +NL A V I D WNP + Q+ R HRIGQ VK+
Sbjct: 710 FSDKTSDVFVFLLSTRAGGVGINLTAADTVIIFDSDWNPQNDLQAQARCHRIGQTSEVKV 769
Query: 752 TRFCIEDSIESRIIELQEKKASMIHATINQ 781
R E++ E + + K + A + +
Sbjct: 770 YRLVTENTYEREMFDKAGLKLGLDRAVLQK 799
>Hs22047300 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1970
Score = 134 bits (336), Expect = 7e-31
Identities = 158/637 (24%), Positives = 257/637 (39%), Gaps = 150/637 (23%)
Query: 167 IDVFKKL--QESPIRQVERAPQPDGMAI----------RLLPFQLEGLHWLQQQEESDYN 214
I+ F+KL +E +VER P D +L +QLEG++WL + N
Sbjct: 360 IEEFEKLMSREPETERVERPPADDWKKSESSREYKNNNKLREYQLEGVNWLLFNWYNMRN 419
Query: 215 GGVLADEMGMGKTIQTIALLMSDITRK---PSLVVAPTVALMQWKNEIEQHTNKKLSVYM 271
+LADEMG+GKTIQ+I L + P LV+AP + W+ E T +L+V +
Sbjct: 420 C-ILADEMGLGKTIQSITFLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWT--ELNVVV 476
Query: 272 YHGAN---RTNNLGD--FKDVD--VILTTYAVLESVYRKQVYGFKRKAGTVKEKSLLHSI 324
YHG+ RT L + FKD VI +Y + + F+ E L +I
Sbjct: 477 YHGSQASRRTIQLYEMYFKDPQGRVIKGSYK-----FHAIITTFEMILTDCPE---LRNI 528
Query: 325 NFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGTPLQNRIGEMYSLIRFLNIEPFT 384
+ V++DEAH +K+R + + + + + L+GTPLQN + E++SL+ FL F
Sbjct: 529 PWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSRFP 588
Query: 385 RYYCKQCSCSSENWRFSDYLHCDDCGHVGMQHTNFFNHFMLKNVQKHGIEGPGLQSFQNI 444
T F F + + Q +
Sbjct: 589 ------------------------------SETTFMQEFGDLKTE---------EQVQKL 609
Query: 445 QTLLARIMLRRTKVERADDLGLPPRIVTVRKDYFNEEEKDLYQSLYSDIKRKYNSYVEEG 504
Q +L +MLRR K + + L P+ T+ E ++ + Y I K +++ +G
Sbjct: 610 QAILKPMMLRRLKED--VEKNLAPKEETI----IEVELTNIQKKYYRAILEKNFTFLSKG 663
Query: 505 VVLNNYANIFTLITRMRQMADHPDLVLKRLKGNNDNNPGVIICQLCDDEAEEPIESKCHH 564
N N+ + +R+ +HP L+ + AEE I
Sbjct: 664 GGQANVPNLLNTMMELRKCCNHPYLI---------------------NGAEEKI------ 696
Query: 565 RFCRLCINEYIDSFMADEKKLTCPVCHIGLSIDLQQQA-LEVDEELFKKQSIVSRLKMGG 623
+ E+ ++ A+ S D Q QA ++ +L ++ +LK GG
Sbjct: 697 ------LEEFKETHNAE-------------SPDFQLQAMIQAAGKLVLIDKLLPKLKAGG 737
Query: 624 KWRSSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTP 683
+ ++FSQ LD++E L + + ++ G +
Sbjct: 738 H------------------------RVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRG 773
Query: 684 TQRDQTIKYFME-NIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHR 742
R I F + + VFL+ +AGG+ +NL A I D WNP + Q+ R HR
Sbjct: 774 NLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHR 833
Query: 743 IGQFRPVKITRFCIEDSIESRIIELQEKKASMIHATI 779
IGQ + VKI R +S E + + K + A +
Sbjct: 834 IGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVL 870
>Hs22047966 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1953
Score = 131 bits (330), Expect = 4e-30
Identities = 160/665 (24%), Positives = 267/665 (40%), Gaps = 173/665 (26%)
Query: 151 PFERNTAKLYAHHSE-LIDVFKKLQESPIRQVERAPQPDGMAIRLLP------------- 196
P+E +T +L E I FK++Q S +++R +P A + L
Sbjct: 127 PYEDSTWELKEDVDEGKIREFKRIQ-SRHPELKRVNRPQASAWKKLELSHEYKNRNQLRE 185
Query: 197 FQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLMSDIT---RKPSLVVAPTVALM 253
+QLEG++WL + N +LADEMG+GKTIQ+IA L P LV+AP +
Sbjct: 186 YQLEGVNWLLFNWYNRQNC-ILADEMGLGKTIQSIAFLQEVYNVGIHGPFLVIAPLSTIT 244
Query: 254 QWKNEIEQHTNKKLSVYMYHGANRTNNL-----------------GDFKDVDVILTTYAV 296
W+ E T +++ +YHG+ + + G +K D ++TT+ +
Sbjct: 245 NWEREFNTWT--EMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYK-FDALITTFEM 301
Query: 297 LESVYRKQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKR 356
+ S + L I + VI+DEAH +K+R ++ + + +
Sbjct: 302 ILS-----------------DCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHK 344
Query: 357 WCLSGTPLQNRIGEMYSLIRFLNIEPFTRYYCKQCSCSSENWRFSDYLHCDDCGHVGMQH 416
L+GTPLQN + E++SL+ FL F SE S++L D G + +
Sbjct: 345 VLLTGTPLQNTVEELFSLLHFLEPSQF----------PSE----SEFL--KDFGDLKTE- 387
Query: 417 TNFFNHFMLKNVQKHGIEGPGLQSFQNIQTLLARIMLRRTKVERADDLGLPPRIVTVRKD 476
+ Q +Q +L +MLRR K + + L P+ T+
Sbjct: 388 ----------------------EQVQKLQAILKPMMLRRLKED--VEKNLAPKQETI--- 420
Query: 477 YFNEEEKDLYQSLYSDIKRKYNSYVEEGVVLNNYANIFTLITRMRQMADHPDLVLKRLKG 536
E ++ + Y I K S++ +G N N+ + +R+ +HP L+
Sbjct: 421 -IEVELTNIQKKYYRAILEKNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLI------ 473
Query: 537 NNDNNPGVIICQLCDDEAEEPIESKCHHRFCRLCINEYIDSFMADEKKLTCPVCHIGLSI 596
+ AEE I + E+ ++ CHI +
Sbjct: 474 ---------------NGAEEKI------------LTEFREA------------CHI-IPH 493
Query: 597 DLQQQAL-EVDEELFKKQSIVSRLKMGGKWRSSTKIEALVEELYNLRSDKRTIKSIVFSQ 655
D QA+ +L ++ +LK GG K ++FSQ
Sbjct: 494 DFHLQAMVRSAGKLVLIDKLLPKLKAGGH------------------------KVLIFSQ 529
Query: 656 FTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQTIKYFME-NIHCEVFLVSLKAGGVALN 714
LD++E L + + ++ G + R I F + + VFL+ +AGG+ +N
Sbjct: 530 MVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGIN 589
Query: 715 LCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRIIELQEKKASM 774
L A I D WNP + Q+ R HRIGQ + VK+ R +S E + + K +
Sbjct: 590 LTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGL 649
Query: 775 IHATI 779
A +
Sbjct: 650 DKAVL 654
>CE11083 [KL] KOG4439 RNA polymerase II transcription termination factor
TTF2/lodestar DEAD-box superfamily
Length = 1091
Score = 131 bits (330), Expect = 4e-30
Identities = 82/254 (32%), Positives = 126/254 (49%), Gaps = 51/254 (20%)
Query: 180 QVERAPQPDGMAIRLLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLMSD-- 237
+ E P G + L+P Q GL W++ +E GG+LAD+MG+GKT+ I+L+
Sbjct: 457 ETELTDTPKGFKLELMPHQKAGLTWMRWRETQPQPGGILADDMGLGKTLSMISLIAHQKA 516
Query: 238 --------------------------ITRKPSLVVAPTVALMQWKNEIEQHTNKK-LSVY 270
I +L+VAP + QW EI++ + LS Y
Sbjct: 517 ARRARREDGNDDKDKEKRKVVKEQGLIPSNGTLIVAPASLIHQWDAEIDRRLDDSVLSTY 576
Query: 271 MYHGANRTNNLGDFK--DVDVILTTYAVLESVYRKQVY------------------GFKR 310
M+HG + ++ + DV++TT+ ++ + +++ G +R
Sbjct: 577 MFHGTKKQRDIDARRLARYDVVITTFNLIANELIEKIRTKSKADDSSDGESDSNHTGIRR 636
Query: 311 KAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGTPLQNRIGE 370
G K+ S+L I + RVILDEAH IK+R S +KAV L RWCLSGTP+ N + +
Sbjct: 637 AVG--KDDSVLAQICWSRVILDEAHTIKNRQSLASKAVCRLSAFSRWCLSGTPIHNNLWD 694
Query: 371 MYSLIRFLNIEPFT 384
+YSL+RFL I PF+
Sbjct: 695 LYSLVRFLRIRPFS 708
Score = 102 bits (255), Expect = 2e-21
Identities = 59/173 (34%), Positives = 103/173 (59%), Gaps = 4/173 (2%)
Query: 628 STKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRD 687
S KI+ +E + N+ K K ++ SQ+TS+L+L+E +K +GF+ + G + R
Sbjct: 916 SCKIKNTLEIVENIMEKKE--KVVIVSQWTSVLNLIEIHIKSSGFKYTSITGQVLVKDRQ 973
Query: 688 QTIKYF-MENIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQF 746
+ + F E V L+SL AGGV LNL + + ++D WNP++E Q+ DR++R+GQ
Sbjct: 974 ERVDSFNREKGGARVMLLSLAAGGVGLNLTGGNHLVMVDLHWNPALEQQAFDRIYRMGQK 1033
Query: 747 RPVKITRFCIEDSIESRIIELQEKKASMIHATINQDEA-AINRLTPADLQFLF 798
+ V I R + +IE R++ LQ+ K ++ + ++ + +N+LT AD++ LF
Sbjct: 1034 KDVFIHRLVTKGTIEQRVVMLQKDKVALASSVLDGNATRKMNKLTTADIKMLF 1086
>CE14110 [KL] KOG4439 RNA polymerase II transcription termination factor
TTF2/lodestar DEAD-box superfamily
Length = 1026
Score = 130 bits (328), Expect = 6e-30
Identities = 82/243 (33%), Positives = 125/243 (50%), Gaps = 46/243 (18%)
Query: 187 PDGMAIRLLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLMSDIT----RKP 242
PDG+ + L+P Q GL WL +E ++GG+LAD+MG+GKT+ ++L++ RK
Sbjct: 382 PDGLLVELMPHQKAGLRWLVWREGQPHSGGILADDMGLGKTLSMLSLIVHQKAARRARKE 441
Query: 243 S------------------------LVVAPTVALMQWKNEIEQHTNKKL-SVYMYHGANR 277
S L++AP + QW+ EI + L SV+M+HG +
Sbjct: 442 SGDNAADKEKRRVAKEEGLYPSNGTLIIAPASLIHQWEAEINRRLESDLLSVFMFHGTKK 501
Query: 278 TNNLG--DFKDVDVILTTYAVLES-VYRKQVYGFKRKAGTVKEK--------------SL 320
+ + DV++TTY + + + K+ G K++ + E S
Sbjct: 502 QRQIEPKELARYDVVITTYTLAANELMEKKAAGSKKEEDSDDESENEENPRRPAGKNDSP 561
Query: 321 LHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGTPLQNRIGEMYSLIRFLNI 380
L + + RVILDEAH IK+R S +KAV L + RWCLSGTP+ N + ++YSL+RFL I
Sbjct: 562 LARVAWSRVILDEAHAIKNRLSQCSKAVCRLSSFSRWCLSGTPIHNNLWDLYSLVRFLRI 621
Query: 381 EPF 383
F
Sbjct: 622 PLF 624
Score = 96.7 bits (239), Expect = 1e-19
Identities = 58/163 (35%), Positives = 97/163 (58%), Gaps = 16/163 (9%)
Query: 649 KSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQTIKYF-MENIHCEVFLVSLK 707
K ++ SQ+TS+L+LVE ++ G + G + R + + F E +V L+SL
Sbjct: 858 KVVIVSQWTSVLNLVEKHIQAGGHNYTSITGQVLVKDRQERVDSFNQEKGGAQVMLLSLT 917
Query: 708 AGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPV-----KITRFC---IEDS 759
AGGV LNL + + ++D WNP++E Q+ DR++R+GQ + V I++FC ++ +
Sbjct: 918 AGGVGLNLIGGNHLIMVDLHWNPALEQQACDRIYRMGQKKEVFIHRLNISKFCRLIVKGT 977
Query: 760 IESRIIELQEKK----ASMIHATINQDEAAINRLTPADLQFLF 798
IE R+++LQEKK AS++ T + +N+LT AD++ LF
Sbjct: 978 IEQRVMDLQEKKLALAASVLEGTATR---KLNKLTTADIRMLF 1017
>CE18196 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 2957
Score = 128 bits (321), Expect = 4e-29
Identities = 149/620 (24%), Positives = 253/620 (40%), Gaps = 170/620 (27%)
Query: 194 LLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLMSDIT---RKPSLVVAPTV 250
L +Q EG+ WL + N +LADEMG+GKT+QTI L P LVV P
Sbjct: 1187 LREYQFEGVDWLLYCYYNAQNC-ILADEMGLGKTVQTITFLSRIYDYGIHGPFLVVVPLS 1245
Query: 251 ALMQWKNEIEQHTNKKLSVYMYHGA-------------------NRTNNLGDFKDVDVIL 291
+ W E E T+ ++ +YHG+ N +F +D ++
Sbjct: 1246 TIQNWVREFETWTD--MNAIVYHGSAYAREVLQQYEVFYDKRHCGAKNWKKNFVKIDALI 1303
Query: 292 TTYAVLESVYRKQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSL 351
TT+ + V + L I + ++DEAH +K+R N VN L
Sbjct: 1304 TTFETV-----------------VSDVEFLKKIPWRVCVIDEAHRLKNR--NCKLLVNGL 1344
Query: 352 ---QTKKRWCLSGTPLQNRIGEMYSLIRFLNIEPF--TRYYCKQC-SCSSENWRFSDYLH 405
+ + R L+GTPLQN I E++SL+ FL+ + F + + +Q SC +++
Sbjct: 1345 LAFRMEHRVLLTGTPLQNNIDELFSLLNFLHPQQFDNSATFLEQFGSCQTDD-------- 1396
Query: 406 CDDCGHVGMQHTNFFNHFMLKNVQKHGIEGPGLQSFQNIQTLLARIMLRRTKVERADDLG 465
Q +Q +L +MLRR K + LG
Sbjct: 1397 ----------------------------------QVQKLQEILKPMMLRRLKEDVEKSLG 1422
Query: 466 LPPRIVTVRKDYFNEEEKDLYQSLYSDIKRKYNSYVEEGVVLNNYANIFTLITRMRQMAD 525
P+ T+ + ++ +K Y+++ ++R + S++ +G + N+ + +R+ +
Sbjct: 1423 --PKEETIIEVQLSDMQKKFYRAI---LERNF-SHLCKGTSAPSLMNV---MMELRKCCN 1473
Query: 526 HPDLVLKRLKGNNDNNPGVIICQLCDDEAEEPIESKCHHRFCRLCINEYIDSFMADEKKL 585
HP L+ + AEE I +N++ +L
Sbjct: 1474 HPFLI---------------------NGAEEAI------------MNDF---------RL 1491
Query: 586 TCPVCHIGLSIDLQQQALEVDEELFKKQSIVSRLKMGGKWRSSTKIEALVEELYNLRSDK 645
P + DEE ++++ ++S K+ + + L LR D
Sbjct: 1492 AHP---------------DWDEETLAHKALI---------QASGKVVLIEKLLPKLRKDG 1527
Query: 646 RTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQTI-KYFMENIHCEVFLV 704
K ++FSQ +LDL+E L + ++ G++ R I ++ EN VFL+
Sbjct: 1528 H--KVLIFSQMVKVLDLLEEFLISMSYPFERIDGNVRGDLRQAAIDRFSKENSDRFVFLL 1585
Query: 705 SLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRI 764
+AGG+ +NL A V I D WNP + Q+ R HRIGQ + VK+ R ++ E +
Sbjct: 1586 CTRAGGLGINLTAADTVIIFDSDWNPQNDLQAQARCHRIGQKKLVKVYRLITSNTYEREM 1645
Query: 765 IELQEKKASMIHATINQDEA 784
+ K + A + A
Sbjct: 1646 FDKASLKLGLDKAVLQSTTA 1665
>YER164w [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1468
Score = 124 bits (310), Expect = 7e-28
Identities = 140/616 (22%), Positives = 245/616 (39%), Gaps = 155/616 (25%)
Query: 194 LLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIA----LLMSDITRKPSLVVAPT 249
L FQL G++W+ NG +LADEMG+GKT+QT+A L+ + P ++V P
Sbjct: 376 LRDFQLTGINWMAFLWSKGDNG-ILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPL 434
Query: 250 VALMQWKNEIE--------------QHTNKKLSVYMYHGANRTNNLGDFKDVDVILTTYA 295
+ W + E Q + + Y ++ R K +V+LTTY
Sbjct: 435 STMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMK-FNVLLTTYE 493
Query: 296 VLESVYRKQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKK 355
+ +K+++ L SI + + +DEAH +K+ S+ +++NS +
Sbjct: 494 YI-----------------LKDRAELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVAN 536
Query: 356 RWCLSGTPLQNRIGEMYSLIRFLNIEPFTRYYCKQCSCSSENWRFSDYLHCDDCGHVGMQ 415
R ++GTPLQN I E+ +L+ FL FT ++ +++ +Y+H
Sbjct: 537 RMLITGTPLQNNIKELAALVNFLMPGRFT--IDQEIDFENQDEEQEEYIH---------- 584
Query: 416 HTNFFNHFMLKNVQKHGIEGPGLQSFQNIQTLLARIMLRRTKVERADDLGLPPRIVTVRK 475
++ + +LRR K + + LP + +
Sbjct: 585 ---------------------------DLHRRIQPFILRRLK--KDVEKSLPSKTERI-- 613
Query: 476 DYFNEEEKDLYQSLYSDIKRKYNSYVEEGVVLNNYANIFTLITRMRQMADHPDLVLKRLK 535
E D+ Y +I K S + G + ++ ++ +++ ++HP L
Sbjct: 614 --LRVELSDVQTEYYKNILTKNYSALTAG-AKGGHFSLLNIMNELKKASNHPYLF----- 665
Query: 536 GNNDNNPGVIICQLCDDEAEEPIESKCHHRFCRLCINEYIDSFMADEKKLTCPVCHIGLS 595
D AEE + + ++ D M E L + G
Sbjct: 666 ----------------DNAEERV------------LQKFGDGKMTRENVLRGLIMSSGKM 697
Query: 596 IDLQQQALEVDEELFKKQSIVSRLKMGGKWRSSTKIEALVEELYNLRSDKRTIKSIVFSQ 655
+ L Q +++RLK G I + + + ++ D +IK I F +
Sbjct: 698 VLLDQ--------------LLTRLKKDG---HRVLIFSQMVRMLDILGDYLSIKGINFQR 740
Query: 656 FTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQTIKYF-MENIHCEVFLVSLKAGGVALN 714
L G++ QR +I +F + + VFL+S +AGG+ +N
Sbjct: 741 ---------------------LDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGIN 779
Query: 715 LCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRIIELQEKKASM 774
L A V I D WNP + Q+ R HRIGQ V + R +D++E ++E KK +
Sbjct: 780 LMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMIL 839
Query: 775 IHATINQDEAAINRLT 790
+A I+ N+ T
Sbjct: 840 EYAIISLGVTDGNKYT 855
>Hs21362042 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 2713
Score = 123 bits (309), Expect = 1e-27
Identities = 151/650 (23%), Positives = 253/650 (38%), Gaps = 144/650 (22%)
Query: 151 PFERNTAKLYAHHSEL-IDVFKKLQESP-IRQVERAPQPDGMAI----------RLLPFQ 198
P+E +T +L + F+ LQ P I+ VER + +L +Q
Sbjct: 404 PYEESTWELEEDVDPAKVKEFESLQVLPEIKHVERPASDSWQKLEKSREYKNSNQLREYQ 463
Query: 199 LEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLMSDITRK---PSLVVAPTVALMQW 255
LEG++WL + N +LADEMG+GKTIQ+I L R P L++AP + W
Sbjct: 464 LEGMNWLLFNWYNRKNC-ILADEMGLGKTIQSITFLSEIFLRGIHGPFLIIAPLSTITNW 522
Query: 256 KNEIEQHTNKKLSVYMYHGANRTNNLGDFKDVDVILTTYAVLESVYRKQVY--GFKRKAG 313
+ E T +++ +YHG+ + + ++ L V++ V F+
Sbjct: 523 EREFRTWT--EMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLSGVFKFHVVITTFEMILA 580
Query: 314 TVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGTPLQNRIGEMYS 373
E L I++ VI+DEAH +K+R + + + + + L+GTPLQN + E++S
Sbjct: 581 DCPE---LKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFS 637
Query: 374 LIRFLNIEPFTRYYCKQCSCSSENWRFSDYLHCDDCGHVGMQHTNFFNHFMLKNVQKHGI 433
L+ FL F T F F +
Sbjct: 638 LLNFLEPSQFP------------------------------SETAFLEEFGDLKTE---- 663
Query: 434 EGPGLQSFQNIQTLLARIMLRRTKVERADDL--GLPPRIVTVRKDYFNEEEKDLYQSLYS 491
+ + +Q++L +MLRR K DD+ L P+ T+ E ++ + Y
Sbjct: 664 -----EQVKKLQSILKPMMLRRLK----DDVEKNLAPKQETI----IEVELTNIQKKYYR 710
Query: 492 DIKRKYNSYVEEGVVLNNYANIFTLITRMRQMADHPDLVLKRLKGNNDNNPGVIICQLCD 551
I K S++ +G +N N+ + +R+
Sbjct: 711 AILEKNFSFLTKGANQHNMPNLINTMMELRKC---------------------------- 742
Query: 552 DEAEEPIESKCHHRFCRLCINEYIDSFMADEKKLTCPVCHIGLSIDLQQQAL-EVDEELF 610
C+H + IN + + D +K P D Q QA+ + +L
Sbjct: 743 ----------CNHPYL---INGAEEKILEDFRKTHSPDAP-----DFQLQAMIQAAGKLV 784
Query: 611 KKQSIVSRLKMGGKWRSSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRA 670
++ +L GG K ++FSQ LD++E L +
Sbjct: 785 LIDKLLPKLIAGGH------------------------KVLIFSQMVRCLDILEDYLIQR 820
Query: 671 GFQTVKLQGSMTPTQRDQTIKYFME-NIHCEVFLVSLKAGGVALNLCEASQVFILDPWWN 729
+ ++ G + R I F + + VFL+ +AGG+ +NL A I D WN
Sbjct: 821 RYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWN 880
Query: 730 PSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRIIELQEKKASMIHATI 779
P + Q+ R HRIGQ + VK+ R +S E + + K + A +
Sbjct: 881 PQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVL 930
>7301343 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box superfamily
Length = 1311
Score = 119 bits (298), Expect = 2e-26
Identities = 164/704 (23%), Positives = 285/704 (40%), Gaps = 112/704 (15%)
Query: 164 SELIDVFKKLQESPIRQVERAPQPDGMAIRLLPFQLEGLHW--------LQQQEESDYNG 215
+EL+ F + + + QV++ G+ +L P Q+ G+ + L++ +E +G
Sbjct: 430 NELVLDFDEESKKALLQVDK-----GLLKKLKPHQVAGVKFMWDACFETLKESQEKPGSG 484
Query: 216 GVLADEMGMGKTIQTIALLMSDI--TRKPS----LVVAPTVALMQWKNEIEQH----TNK 265
+LA MG+GKT+Q + L + + TR+ L+++P + W E
Sbjct: 485 CILAHCMGLGKTLQVVTLSHTLLVNTRRTGVDRVLIISPLSTVNNWAREFTSWMKFANRN 544
Query: 266 KLSVY----MYHGANRTNNLGD-FKDVDVILTTYAVLESVYRKQVYGFKRKAGTVKEKSL 320
+ VY R L + F + V + Y + + ++ G ++K ++L
Sbjct: 545 DIEVYDISRYKDKPTRIFKLNEWFNEGGVCILGYDMYRILANEKAKGLRKKQREQLMQAL 604
Query: 321 LHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGTPLQNRIGEMYSLIRFL-- 378
+ V+ DE H +K+ ++ +KAV ++TK+R L+GTPLQN + E Y +I+F+
Sbjct: 605 VDP-GPDLVVCDEGHLLKNEKTSISKAVTRMRTKRRIVLTGTPLQNNLREYYCMIQFVKP 663
Query: 379 NIEPFTRYYCKQCSCSSENWRFSDYLHCDDCGHVGMQHTNFFNHFMLKNVQKHGIEGPGL 438
N+ + Y + N +++D D M+H + H +L+
Sbjct: 664 NLLGTYKEYMNRFVNPITNGQYTDSTERD---LRLMKHRSHILHKLLEGC---------- 710
Query: 439 QSFQNIQTLLARIMLRRTKVERADDLGLPPRIVTVRKDYFNEEEKDLYQSLYSDIKRKYN 498
++R D L P + + +L Q LY +
Sbjct: 711 -------------------IQRRDYSVLAPYLPPKHEYVVYTTLSELQQKLYGYYMTTHR 751
Query: 499 SYVEEGVVLNNYANIFTLITRMRQMADHP--------DLVLKRLKGNNDNNPGVIICQLC 550
G V+ A +F +R++ HP +++ KRL N+D++ IC
Sbjct: 752 EQ-SGGDVVGKGARLFQDFQDLRRIWTHPMNLRVNSDNVIAKRLLSNDDSDMEGFICDET 810
Query: 551 D-DEAEEPIESKCHHRFCRLCINEYIDSFMADEKKLTCPVCHIGLSIDLQQQAL------ 603
D DEA C ++ S +K+ T G D + L
Sbjct: 811 DEDEAASNSSDSCETFKSDASMSGLAASSGKVKKRKTRNGNAGGGDSDSDLEMLGGLGGG 870
Query: 604 ---EVDEELFKKQSIVSRLKMGGKWRSSTKIEALVEELYNLRSDKRTIKSIVFSQFTSML 660
+ D+ + V ++ S K+ L+ L + K +VFSQ L
Sbjct: 871 SSVQKDDPSEWWKPFVEERELNNV-HHSPKLLILLRLLQQCEAIGD--KLLVFSQSLQSL 927
Query: 661 DLVEWRLK----------------------RAGFQTVKLQGSMTPTQRDQTIKYF--MEN 696
D++E L +G +L GS + QR+ K F + N
Sbjct: 928 DVIEHFLSLVDSNTKNYEFEGDVGDFKGCWTSGKDYFRLDGSCSVEQREAMCKQFNNITN 987
Query: 697 IHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCI 756
+ +FL+S +AGG+ +NL A++V I D WNPS + QS RV+R GQ +P I R
Sbjct: 988 LRARLFLISTRAGGLGINLVAANRVVIFDVSWNPSHDTQSIFRVYRFGQIKPCYIYRLIA 1047
Query: 757 EDSIESRIIELQEKKASMIHATINQDEAAINR-LTPADLQFLFN 799
++E ++ E Q K + I DE I+R DL L++
Sbjct: 1048 MGTMEQKVYERQVAKQATAKRVI--DEQQISRHYNQTDLMELYS 1089
>At1g08600 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box superfamily
Length = 1447
Score = 114 bits (285), Expect = 6e-25
Identities = 155/674 (22%), Positives = 280/674 (40%), Gaps = 126/674 (18%)
Query: 161 AHHSELIDVFKKLQESPIRQVERAPQPDGMAIRLLPFQLEGLHWLQQ---QEESDYNGG- 216
AH +++V +++ E +R P ++ +L Q+ G+ ++ + Q S G
Sbjct: 660 AHSGYIVNVVREIGEEAVRV------PRSISAKLKVHQVTGIRFMWENIIQSISRVKSGD 713
Query: 217 -----VLADEMGMGKTIQTIALLMS-----DITRKPSLVVAPTVALMQWKNEIEQHTN-- 264
+LA MG+GKT Q IA L + D+ K +L+V P L W++E E+
Sbjct: 714 KGLGCILAHTMGLGKTFQVIAFLYTAMRCVDLGLKTALIVTPVNVLHNWRSEFEKWMPSE 773
Query: 265 -KKLSVYMYHGANRTNNLGDFKDVDVILTTYAVLESVYRKQVYGFKRKA--GTVKEKSLL 321
K L ++M +R +LT + V+ F+ + VK+ +
Sbjct: 774 VKPLRIFMLGDVSRERRFD-------LLTKWRKKGGVFLMGYTNFRNLSLGRGVKDLNAA 826
Query: 322 HSI-NFYR-----VILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGTPLQNRIGEMYSLI 375
I N R ++ DEAH IK+ ++T +A+ ++ ++R L+G+PLQN + E Y ++
Sbjct: 827 RGICNALRDGPDILVCDEAHIIKNTKADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMV 886
Query: 376 RFLNIEPFTRYYCKQCSCSSENWRFSDYLHCDDCGHVGMQHTNFFNHFMLKNVQKHGIEG 435
F+ E F S RF + + G + + N + H +
Sbjct: 887 DFVR-EGFLG------SSPEFRNRFQNPI------ENGQHMNSTAEDVKIMNQRSHIL-- 931
Query: 436 PGLQSFQNIQTLLARIMLRRTKVERADDLGLPPRIVTVRKDYFNEEEKDLYQ---SLYSD 492
++ ++ + R+ + K + LPP+ V V + ++ LYQ LY
Sbjct: 932 -----YEQLKGFVQRMDMNVVKKD------LPPKTVFVISVKLSPLQRILYQRFLELYGF 980
Query: 493 IKRKYNSYVEEGVVLNNYANIFTLITRMRQMADHPDLVLKRLKGNNDNNPGVIICQLCDD 552
+ + + + N F + Q+ +HP + R + + + G I+ D
Sbjct: 981 SDGRTDERMRK--------NFFAAYQVLAQILNHPGIPQLRSEDSKNGRRGSIVDIPDDC 1032
Query: 553 EAEEPIESKCHHRFCRLCINEYIDSFMADEKKLTCPVCHIGLSIDLQQQALEVDEELFKK 612
++E I+ + + EK+ T DLQ +VD L K
Sbjct: 1033 SSDENIDY----------------NMVTGEKQRTMN--------DLQD---KVDGYLQKD 1065
Query: 613 QSIVSRLKMGGKWRSSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRA-- 670
+ K K + L+ ++ ++ +D K++VFSQ LDL+E L R
Sbjct: 1066 WWVDLLQKNNYKVSDFSGKMILLLDILSMSADVGD-KALVFSQSIPTLDLIELYLSRVPR 1124
Query: 671 ----------GFQTVKLQGSMTPTQRDQTIKYFME--NIHCEVFLVSLKAGGVALNLCEA 718
G ++ G ++R + + F E N + L+S +AG + +NL A
Sbjct: 1125 HGKQGKFWKKGKDWYRIDGKTESSERQKLVDRFNEPDNKRVKCTLISTRAGSLGINLYAA 1184
Query: 719 SQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRIIELQEKKASM---- 774
++V I+D WNP+ + Q+ R R GQ +PV R +IE +I + Q K +
Sbjct: 1185 NRVIIVDGSWNPTYDLQAIFRAWRYGQKKPVFAYRLMARGTIEEKIYKRQVTKEGLAARV 1244
Query: 775 -----IHATINQDE 783
+H TI+++E
Sbjct: 1245 VDRQQVHRTISKEE 1258
>CE15856 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 1529
Score = 112 bits (280), Expect = 2e-24
Identities = 150/662 (22%), Positives = 259/662 (38%), Gaps = 141/662 (21%)
Query: 153 ERNTAKLYAHHSELIDVFKKL-QESPIRQVERAPQPDGMAIRLL-PFQLEGLHWLQQQEE 210
E + +L A SE + L S + +V RA G +L +QLEG+ W++
Sbjct: 939 EGMSQELLAKKSEYSNFINVLGSPSSLPRVIRADIRGGFDTSMLREYQLEGITWIRFLRT 998
Query: 211 SDYNGGVLADEMGMGKTIQTIALLMSDITR-------KPSLVVAPTVAL----MQWKNEI 259
+G +LAD+MG+GKT+QT+ + + R + SL+V P + ++W
Sbjct: 999 YGLHG-ILADDMGLGKTLQTMCSIALSVDRDEMSEFHRCSLIVCPRTLVDHWCLEWNRFF 1057
Query: 260 EQHTNKKLSVYMYHGANRTNNLGDFKDVDVILTTYAVLESVYRK-QVYGFKRKAGTVKEK 318
Q ++ HGA ++ + Y L++ Y +V+ +
Sbjct: 1058 PQRVPASKNLTRCHGA------------EICVIAYDELKTAYMMDRVWNY---------- 1095
Query: 319 SLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGTPLQNRIGEMYSLIRFL 378
++LDE H +++ K + L K R LSGTP+QN +++SL
Sbjct: 1096 ----------IVLDEGHVMRNSKLRAWKFASQLVGKSRLILSGTPVQNSPADLWSLFA-- 1143
Query: 379 NIEPFTRYYCKQCSCSSENWRFSDYLHCDDCGHVGMQHTNFFNHFMLKNVQKHGIEG--P 436
W YL G + F M + K
Sbjct: 1144 -------------------WLMPGYL-----GSEKQFRSQFLKKIMKCRLPKANEADLKA 1179
Query: 437 GLQSFQNIQTLLARIMLRRTKVERADDLGLPPRIVTVRKDYFNEEEKDLYQSLYSDIKRK 496
G + + L+ ++RR K E + LP + V + E++K++Y+ + + R
Sbjct: 1180 GSAAISQLHKLVLPFVMRRLKTEVLKE--LPEKNVQDYECELTEDQKEIYRFV---VDRC 1234
Query: 497 YNSYVEEGVVLNNYANIFTLITRMRQMADHPDLVLKRLKGNNDNNPGVIICQLCDDEAEE 556
+S + G+ +++ TLIT +R++ DH LV L P I+ + ++ +
Sbjct: 1235 TSSQEDVGL-----SSLVTLIT-LRKLTDHTKLVHDTLA--KIGAPQYILSKALAAKSGK 1286
Query: 557 PIESKCHHRFCRLCINEYIDSFMADEKKLTCPVCHIGLSIDLQQQALEVDEELFKKQSIV 616
K C +C N + +E E+L +
Sbjct: 1287 MEALKQLLIECEICKN--------------------------PDEEVEQPEDLGGLVASG 1320
Query: 617 SRLKMGGKWRSSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVK 676
R + +W++S K L SD +KS F S L
Sbjct: 1321 HRALIFCQWKTSAK----------LVSD--ALKSGEFGSVVSHL---------------V 1353
Query: 677 LQGSMTPTQRDQTIKYFMENIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQS 736
L GS+ R + + F E+ +V +++ GGV LNL A V LD WNP + Q+
Sbjct: 1354 LDGSVPAGDRMKMVNRFNEDKTIDVLILTTHVGGVGLNLTGADTVIFLDHDWNPMKDLQA 1413
Query: 737 GDRVHRIGQFRPVKITRFCIEDSIESRIIELQEKKASMIHATINQDEAAINRLTPADLQF 796
DR HR+GQ R V + R + ++E +++ L + K + A I D ++ + +L
Sbjct: 1414 IDRAHRLGQTRNVNVYRLITQGTVEEKVMSLAKFKLNTAQALIGADNTSMMTMETGELMN 1473
Query: 797 LF 798
+F
Sbjct: 1474 MF 1475
>CE23294 [KL] KOG4439 RNA polymerase II transcription termination factor
TTF2/lodestar DEAD-box superfamily
Length = 540
Score = 109 bits (272), Expect = 2e-23
Identities = 71/241 (29%), Positives = 117/241 (48%), Gaps = 30/241 (12%)
Query: 166 LIDVFKKLQESPIRQVERAP----QPDGMA--IRLLPFQLEGLHWLQQQEESDYNGGVLA 219
L D F K + +++ P P+G RL+P Q W+ +E + +GG+L
Sbjct: 10 LNDEFDKCTLEDKKDIKKEPCQDATPNGFVADFRLMPHQEAARDWMIDREAQEPSGGILG 69
Query: 220 DEMGMGKTIQTIALLMSDITR-----------KPSLVVAPTVALMQWKNEIEQHTNKK-L 267
G GKT IAL++ + P+L++ P + QW +E + + L
Sbjct: 70 LAHGQGKTAIVIALILDQKIKCASNDKKFEQKSPTLIIVPKRIIYQWYDEFKDRLEENAL 129
Query: 268 SVYMYHG-----ANRTNNLGDFKDVDVILTTYAVLESVYRKQVYGFKRKAGTVKEKSLLH 322
SVY+Y+ A + + + + DV+LTTY R K + G K +L
Sbjct: 130 SVYLYYDDEFSEARKNISASELQKYDVVLTTY-------RNVPVKEKDETGEKVSKQVLQ 182
Query: 323 SINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGTPLQNRIGEMYSLIRFLNIEP 382
+I + R++LDEAHNI+D + + A+ +L +K RWC++ P QN ++ +LI FL +P
Sbjct: 183 NIKWTRIVLDEAHNIRDSNTKKSTAIATLASKNRWCVTAAPFQNSEWDICNLILFLGNKP 242
Query: 383 F 383
F
Sbjct: 243 F 243
>YDR334w [R] KOG0391 SNF2 family DNA-dependent ATPase
Length = 1514
Score = 103 bits (258), Expect = 8e-22
Identities = 98/368 (26%), Positives = 167/368 (44%), Gaps = 46/368 (12%)
Query: 168 DVFKKLQESPIRQVERAPQPDGMAIRLLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKT 227
D K+QE + V+ P P + L +Q +GL+WL + NG +LADEMG+GKT
Sbjct: 671 DAETKVQEEQLSVVD-VPVPSLLRGNLRTYQKQGLNWLASLYNNHTNG-ILADEMGLGKT 728
Query: 228 IQTIALLMSDITRK----PSLVVAPTVALMQWKNEIEQHTNKKLSVYMYHGA--NRTNNL 281
IQTI+LL K P L+V PT L+ W+ E ++ V Y+G+ R
Sbjct: 729 IQTISLLAYLACEKENWGPHLIVVPTSVLLNWEMEFKRFA-PGFKVLTYYGSPQQRKEKR 787
Query: 282 GDFKDVDVILTTYAVLESVYRKQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRT 341
+ D + V + Q + FKRK + ++LDEAHNIK+
Sbjct: 788 KGWNKPDAFHVCIVSYQLVVQDQ-HSFKRK-------------RWQYMVLDEAHNIKNFR 833
Query: 342 SNTAKAVNSLQTKKRWCLSGTPLQNRIGEMYSLIRFLNIEPFTRYYCKQCSCSSENWRFS 401
S +A+ + T++R L+GTPLQN + E++SL+ FL P T K+ S ++ F
Sbjct: 834 STRWQALLNFNTQRRLLLTGTPLQNNLAELWSLLYFL--MPQTVIDGKKVSGFADLDAFQ 891
Query: 402 DYLHCDDCGHVGMQHTNFFNHFMLKNVQKHGIEGPGLQSFQNIQTLLARIMLRRTKVERA 461
+ G +++ Q G + ++ + +L +LRR K +
Sbjct: 892 QWF--------GRPVDK-----IIETGQNFGQDKETKKTVAKLHQVLRPYLLRRLKAD-- 936
Query: 462 DDLGLPPRIVTVRKDYFNEEEKDLYQSLYSDIKRKYNSYVEEGVVLNNYANIFTLITRMR 521
+ +P + + ++ ++ LY S + K + N+ +I + ++R
Sbjct: 937 VEKQMPAKYEHIVYCKLSKRQRFLYDDFMSRAQTKAT------LASGNFMSIVNCLMQLR 990
Query: 522 QMADHPDL 529
++ +HP+L
Sbjct: 991 KVCNHPNL 998
Score = 86.3 bits (212), Expect = 2e-16
Identities = 49/154 (31%), Positives = 84/154 (53%), Gaps = 2/154 (1%)
Query: 630 KIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQT 689
K++ L L L+ + ++++F+Q T +LD++E L G+ ++L G+ R
Sbjct: 1247 KLQKLAILLQQLKDNGH--RALIFTQMTKVLDVLEQFLNYHGYLYMRLDGATKIEDRQIL 1304
Query: 690 IKYFMENIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPV 749
+ F + VF++S ++GG+ +NL A V D WNP+++ Q DR HRIGQ R V
Sbjct: 1305 TERFNTDSRITVFILSSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQTRDV 1364
Query: 750 KITRFCIEDSIESRIIELQEKKASMIHATINQDE 783
I RF E +IES I++ +K + + I + +
Sbjct: 1365 HIYRFVSEHTIESNILKKANQKRQLDNVVIQEGD 1398
>At3g06400 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1057
Score = 103 bits (256), Expect = 1e-21
Identities = 94/352 (26%), Positives = 156/352 (43%), Gaps = 71/352 (20%)
Query: 186 QPDGMAIRLLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLMSDITRK---- 241
QP + ++ +QL GL+WL + E+ NG +LADEMG+GKT+QTI+LL +
Sbjct: 181 QPSCIQGKMRDYQLAGLNWLIRLYENGING-ILADEMGLGKTLQTISLLAYLHEYRGING 239
Query: 242 PSLVVAPTVALMQWKNEIEQHTNKKLSVYMYHGANRTNNLGDFKDV----DVILTTYAVL 297
P +VVAP L W NEI + +V ++ + V D+ +T++ +
Sbjct: 240 PHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIREDLLVAGKFDICVTSFEM- 298
Query: 298 ESVYRKQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRW 357
+KEK+ L ++ +I+DEAH IK+ S +K + T R
Sbjct: 299 ----------------AIKEKTALRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRL 342
Query: 358 CLSGTPLQNRIGEMYSLIRFLNIEPFTRYYCKQCSCSSENWRFSDYLHCDDCGHVGMQHT 417
++GTPLQN + E+++L+ FL E F+ S+E
Sbjct: 343 LITGTPLQNNLHELWALLNFLLPEIFS---------SAE--------------------- 372
Query: 418 NFFNHFMLKNVQKHGIEGPGLQSFQNIQTLLARIMLRRTKVERADDLGLPPRIVTVRKDY 477
F F + E + Q + +L +LRR K + + GLPP+ T+ K
Sbjct: 373 TFDEWFQISG------ENDQQEVVQQLHKVLRPFLLRRLKSD--VEKGLPPKKETILKVG 424
Query: 478 FNEEEKDLYQSLYSDIKRKYNSYVEEGVVLNNYANIFTLITRMRQMADHPDL 529
++ +K Y++L N+ E +LN + ++R+ +HP L
Sbjct: 425 MSQMQKQYYKALLQKDLEAVNAGGERKRLLN-------IAMQLRKCCNHPYL 469
Score = 97.4 bits (241), Expect = 7e-20
Identities = 53/142 (37%), Positives = 82/142 (57%), Gaps = 1/142 (0%)
Query: 645 KRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQTIK-YFMENIHCEVFL 703
+R + ++FSQ T +LD++E L G+ ++ G+ +RD +I+ Y VFL
Sbjct: 504 ERDSRVLIFSQMTRLLDILEDYLMYRGYLYCRIDGNTGGDERDASIEAYNKPGSEKFVFL 563
Query: 704 VSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESR 763
+S +AGG+ +NL A V + D WNP V+ Q+ DR HRIGQ + V++ RFC E +IE +
Sbjct: 564 LSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTESAIEEK 623
Query: 764 IIELQEKKASMIHATINQDEAA 785
+IE KK ++ I Q A
Sbjct: 624 VIERAYKKLALDALVIQQGRLA 645
>At5g18620 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1063
Score = 102 bits (255), Expect = 2e-21
Identities = 95/352 (26%), Positives = 155/352 (43%), Gaps = 71/352 (20%)
Query: 186 QPDGMAIRLLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLMSDITRK---- 241
QP + +L +QL GL+WL + E+ NG +LADEMG+GKT+QTI+LL +
Sbjct: 173 QPACIQGKLRDYQLAGLNWLIRLYENGING-ILADEMGLGKTLQTISLLAYLHEYRGING 231
Query: 242 PSLVVAPTVALMQWKNEIEQHTNKKLSVYMYHGANRTNNLGDFKDV----DVILTTYAVL 297
P +VVAP L W NEI + +V ++ + V D+ +T++ +
Sbjct: 232 PHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIREELLVAGKFDICVTSFEM- 290
Query: 298 ESVYRKQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRW 357
+KEK+ L ++ +I+DEAH IK+ S +K + T R
Sbjct: 291 ----------------AIKEKTTLRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRL 334
Query: 358 CLSGTPLQNRIGEMYSLIRFLNIEPFTRYYCKQCSCSSENWRFSDYLHCDDCGHVGMQHT 417
++GTPLQN + E+++L+ FL E F+ S+E
Sbjct: 335 LITGTPLQNNLHELWALLNFLLPEVFS---------SAE--------------------- 364
Query: 418 NFFNHFMLKNVQKHGIEGPGLQSFQNIQTLLARIMLRRTKVERADDLGLPPRIVTVRKDY 477
F F + E + Q + +L +LRR K + + GLPP+ T+ K
Sbjct: 365 TFDEWFQISG------ENDQQEVVQQLHKVLRPFLLRRLKSD--VEKGLPPKKETILKVG 416
Query: 478 FNEEEKDLYQSLYSDIKRKYNSYVEEGVVLNNYANIFTLITRMRQMADHPDL 529
++ +K Y++L N E +LN + ++R+ +HP L
Sbjct: 417 MSQMQKQYYKALLQKDLEVVNGGGERKRLLN-------IAMQLRKCCNHPYL 461
Score = 100 bits (250), Expect = 7e-21
Identities = 55/149 (36%), Positives = 86/149 (56%), Gaps = 1/149 (0%)
Query: 646 RTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQTIK-YFMENIHCEVFLV 704
R + ++FSQ T +LD++E L G+Q ++ G+ +RD +I+ Y VFL+
Sbjct: 497 RDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGDERDASIEAYNKPGSEKFVFLL 556
Query: 705 SLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRI 764
S +AGG+ +NL A V + D WNP V+ Q+ DR HRIGQ + V++ RFC E++IE+++
Sbjct: 557 STRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTENAIEAKV 616
Query: 765 IELQEKKASMIHATINQDEAAINRLTPAD 793
IE KK ++ I Q A + D
Sbjct: 617 IERAYKKLALDALVIQQGRLAEQKTVNKD 645
>7296236 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 2237
Score = 102 bits (254), Expect = 2e-21
Identities = 72/222 (32%), Positives = 121/222 (54%), Gaps = 20/222 (9%)
Query: 168 DVFKKLQESPIRQVERAPQPDGMAIRLLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKT 227
+++KKL+++P+ + G ++R P+QLEGL+WL+ + +N +LADEMG+GKT
Sbjct: 2005 ELWKKLEKTPVYK-------GGNSLR--PYQLEGLNWLKFSWYNTHNC-ILADEMGLGKT 2054
Query: 228 IQTIALLMSDIT---RKPSLVVAPTVALMQWKNEIEQHTNKKLSVYMYHGANRTNNLGDF 284
IQ++ + S R P LV+AP + W+ E E T+ ++V +YHG+ + +
Sbjct: 2055 IQSLTFVHSVYEYGIRGPFLVIAPLSTIPNWQREFEGWTD--MNVVVYHGSVTSKQM--I 2110
Query: 285 KDVDVILTTYA--VLESVYRKQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTS 342
+D + T + VL+ + V V + L + N+ ++DEAH +K+R
Sbjct: 2111 QDYEYYYKTESGKVLKEPIKFNVL-ITTFEMIVTDYMDLKAFNWRLCVIDEAHRLKNRNC 2169
Query: 343 NTAKAVNSLQTKKRWCLSGTPLQNRIGEMYSLIRFLNIEPFT 384
+ + L + R LSGTPLQN I E++SL+ FL F+
Sbjct: 2170 KLLEGLRQLNLEHRVLLSGTPLQNNISELFSLLNFLEPSQFS 2211
>At5g66750 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 764
Score = 102 bits (253), Expect = 3e-21
Identities = 49/136 (36%), Positives = 80/136 (58%), Gaps = 1/136 (0%)
Query: 649 KSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQTIKYFM-ENIHCEVFLVSLK 707
K ++FSQ+T +LD++++ GF+ ++ GS+ +R + IK F E C +FL+S +
Sbjct: 542 KVLIFSQWTKLLDIMDYYFSEKGFEVCRIDGSVKLDERRRQIKDFSDEKSSCSIFLLSTR 601
Query: 708 AGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRIIEL 767
AGG+ +NL A + D WNP ++ Q+ DR HRIGQ +PV + R SIE+R+++
Sbjct: 602 AGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLSTAQSIETRVLKR 661
Query: 768 QEKKASMIHATINQDE 783
K + H I Q +
Sbjct: 662 AYSKLKLEHVVIGQGQ 677
Score = 92.8 bits (229), Expect = 2e-18
Identities = 85/351 (24%), Positives = 153/351 (43%), Gaps = 47/351 (13%)
Query: 193 RLLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLM---SDITRKPSLVVAPT 249
+L +QL+G+ WL ++ NG +LAD+MG+GKTIQTI L + P LV+AP
Sbjct: 201 QLKSYQLKGVKWLISLWQNGLNG-ILADQMGLGKTIQTIGFLSHLKGNGLDGPYLVIAPL 259
Query: 250 VALMQWKNEIEQHTNKKLSVYMYHG-ANRTNNLGDFKDVDVILTTYAVLESVYRKQVYGF 308
L W NEI + T ++ +YHG N+ + L + + ++ + Y +
Sbjct: 260 STLSNWFNEIARFT-PSINAIIYHGDKNQRDELRRKHMPKTVGPKFPIVITSYEVAMNDA 318
Query: 309 KRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGTPLQNRI 368
KR +L + V++DE H +K+ + + L+ + L+GTPLQN +
Sbjct: 319 KR---------ILRHYPWKYVVIDEGHRLKNHKCKLLRELKHLKMDNKLLLTGTPLQNNL 369
Query: 369 GEMYSLIRFLNIEPFTRYYCKQCSCSSENWRFSDYLHCDDCGHVGMQHTNFFNHFMLKNV 428
E++SL+ F+ + FT + E+W F F+
Sbjct: 370 SELWSLLNFILPDIFTSH------DEFESW-FD------------------FSEKNKNEA 404
Query: 429 QKHGIEGPGLQSFQNIQTLLARIMLRRTKVERADDLGLPPRIVTVRKDYFNEEEKDLYQS 488
K E Q + +L +LRR K + +L LP + + + +K +
Sbjct: 405 TKEEEEKRRAQVVSKLHGILRPFILRRMKCD--VELSLPRKKEIIMYATMTDHQKKFQEH 462
Query: 489 LYSDIKRKYNSYVEEGVVLNN--YANIFTLITRMRQMADHPDLVLKRLKGN 537
L + +++ E + + L+ ++R+ +HPDL+ ++ G+
Sbjct: 463 L---VNNTLEAHLGENAIRGQGWKGKLNNLVIQLRKNCNHPDLLQGQIDGS 510
>ECU10g1320 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 823
Score = 101 bits (251), Expect = 5e-21
Identities = 89/366 (24%), Positives = 165/366 (44%), Gaps = 78/366 (21%)
Query: 175 ESPIRQVERAPQPDGMAIRLLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALL 234
E P+ P + L +Q+EGL+WL E+ N +LADEMG+GKT+QTIA L
Sbjct: 34 EEPVEPYTFISSPRFVLYELRDYQIEGLNWLINMHENSINC-ILADEMGLGKTLQTIAFL 92
Query: 235 ----MSDITRKPSLVVAPTVALMQWKNEIEQHT-NKKLSVYMYHGANRTNNLGDFKDV-- 287
RK L++ P L W+ E + N K+ V+ ++R + +++
Sbjct: 93 GYIRYVKKERKRHLIILPKSTLANWRREFRKFMPNYKVRVFY---SSRKEMRREAEEIMS 149
Query: 288 ---DVILTTYAVLESVYRKQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNT 344
D LTTY + + +S+L+++ + +++DEAH IK+ S
Sbjct: 150 SRWDACLTTYEMC-----------------INARSILNTVKWSYIVIDEAHRIKNEHSLL 192
Query: 345 AKAVNSLQTKKRWCLSGTPLQNRIGEMYSLIRFLNIEPFTRYYCKQCSCSSENWRFSDYL 404
+K V R ++GTPLQN + E+++L+ F+ E F ++ +F Y+
Sbjct: 193 SKIVRIFSCDHRLLITGTPLQNNVHELWALLNFIVPEIF-----------NDAEKFESYV 241
Query: 405 HCDDCGHVGMQHTNFFNHFMLKNVQKHGIEGPGLQSFQNIQTLLARIMLRRTKVERADDL 464
D EG G ++ + I+++L LRR K++ ++
Sbjct: 242 MNID-------------------------EGDG-EAIRRIRSVLQLFFLRREKID--VEM 273
Query: 465 GLPPRIVTVRKDYFNEEEKDLYQSLYS-DIKRKYNSYVEEGVVLNNYANIFTLITRMRQM 523
LPP+ + + +++ Y+ L D+ ++ +G+++N ++ ++R+
Sbjct: 274 SLPPKKIVNLYSKLSPMQREWYRMLLKRDLSPLGSTRDPKGMLMN-------VVMQLRKC 326
Query: 524 ADHPDL 529
+HP L
Sbjct: 327 CNHPYL 332
Score = 76.3 bits (186), Expect = 2e-13
Identities = 40/116 (34%), Positives = 67/116 (57%), Gaps = 1/116 (0%)
Query: 651 IVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQTIKYF-MENIHCEVFLVSLKAG 709
++FSQ + MLD++E ++ ++ GS + R + I F E +FL++ +AG
Sbjct: 372 LIFSQMSMMLDILEDYAMFREYEYCRIDGSTSYRDRTEAIDGFNAEGSEKFLFLLTTRAG 431
Query: 710 GVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRII 765
G+ +NL A V + D WNP ++ Q+ DR HRIGQ + V + R E+++E RI+
Sbjct: 432 GLGINLSTADTVILFDSDWNPQMDLQAQDRAHRIGQKKQVVVFRLISENTVEERIV 487
>ECU09g1890 [L] KOG0388 SNF2 family DNA-dependent ATPase
Length = 883
Score = 100 bits (249), Expect = 9e-21
Identities = 96/367 (26%), Positives = 155/367 (42%), Gaps = 97/367 (26%)
Query: 185 PQPDGMAIRLLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLM----SDITR 240
PQP + L +QL GL+WL + NG +LAD+MG+GKT+Q+I+LL ++
Sbjct: 266 PQPSILKCTLKEYQLRGLNWLVSLYDKGING-ILADDMGLGKTVQSISLLAHLYETEEVP 324
Query: 241 KPSLVVAPTVALMQWKNEIEQHTNKKLSVYMYHGA--NRTNNLGDFKDVDVILTTYAVLE 298
P LVV + L W E + V + G+ R FK+ DV++TTY
Sbjct: 325 GPFLVVTISSTLDNWAQEFARFL-PSFRVCRFSGSPSERKELKKRFKNSDVVITTYQT-- 381
Query: 299 SVYRKQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWC 358
V ++ +L I + +ILDEA IK S K + S + + R
Sbjct: 382 ---------------AVSDEKMLKKIKWQYMILDEAQAIKSSMSRRWKTLLSFKARNRLL 426
Query: 359 LSGTPLQNRIGEMYSLIRFL------NIEPFTRYYCKQCSCSSENWRFSDYLHCDDCGHV 412
L+GTP+QN + E+++L+ F+ ++ F+ ++ K+ S+
Sbjct: 427 LTGTPIQNSMQELWALLHFIMPTLFDSLNEFSDWFSKEIETSA----------------- 469
Query: 413 GMQHTNFFNHFMLKNVQKHGIEGPGLQSFQNIQTLLARIMLRRTKVERADDLGLPPRIVT 472
M K V + +S Q + +L MLRR K + +LG +I
Sbjct: 470 ----------IMKKTVDE--------KSLQRLHAILKPFMLRRHKSDVIHELGQKTQI-- 509
Query: 473 VRKDYFNEEEKDLY-------QSLYSDIKRKYNSYVEEGVVLNNYANIFTLITRMRQMAD 525
DLY + LY +I R +S E L+ +++++ +
Sbjct: 510 -----------DLYCDLSYRQKVLYKEITRSCSSMEME-----------NLLMQLKKVCN 547
Query: 526 HPDLVLK 532
HPDL K
Sbjct: 548 HPDLFKK 554
Score = 85.9 bits (211), Expect = 2e-16
Identities = 51/160 (31%), Positives = 88/160 (54%), Gaps = 7/160 (4%)
Query: 628 STKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRD 687
S K+ L E L L+++ + +++ Q T M+DL+E L R G+ ++L GS+ + R
Sbjct: 725 SGKLVVLDELLPKLKAEGHRL--LMYFQMTRMIDLIEDYLVRKGYTYLRLDGSLKASARA 782
Query: 688 QTIKYFMENIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFR 747
+ I+ + + +FL+S +AGG+ +NL A V D WNP+ + Q+ DR HR+GQ R
Sbjct: 783 EVIRDWQASDKF-IFLLSTRAGGLGINLTAADTVVFYDSDWNPTADQQAMDRAHRLGQTR 841
Query: 748 PVKITRFCIEDSIESRIIELQEKK----ASMIHATINQDE 783
V + R ++E +++E +K +IH I + E
Sbjct: 842 DVTVYRLITRGTVEEKVLESANRKDEIQKMVIHGNIFEGE 881
>7298962 [KL] KOG4439 RNA polymerase II transcription termination factor
TTF2/lodestar DEAD-box superfamily
Length = 965
Score = 100 bits (249), Expect = 9e-21
Identities = 60/178 (33%), Positives = 100/178 (55%), Gaps = 6/178 (3%)
Query: 626 RSSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQ 685
R S K++ ++++L L + K IV SQ+ S L +V RL+ ++T+ G +T +
Sbjct: 787 RPSAKLKMVIDKLEELLTGTND-KIIVTSQWVSYLAIVRKRLQDLSWETLDFNGQLTAKE 845
Query: 686 RDQTIKYFMENIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQ 745
R+ ++ F N V L+SL AGGV LNL A+ + I+D WNP +E Q+ DR++R GQ
Sbjct: 846 REIVLRDFNANNEKRVLLLSLTAGGVGLNLNVANHMLIVDLHWNPQLERQAQDRIYRYGQ 905
Query: 746 FRPVKITRFCIEDSIESRIIELQEKKASMIHATINQDEAAINR-----LTPADLQFLF 798
+P I R+ +D++E RI LQ+ K + + ++ + + L A+L+ LF
Sbjct: 906 TKPTFIYRYMCQDTVEQRIKSLQDCKLEIAKVVLPEEGGEVTKCVGGGLNLAELKKLF 963
Score = 81.3 bits (199), Expect = 6e-15
Identities = 79/318 (24%), Positives = 142/318 (43%), Gaps = 52/318 (16%)
Query: 243 SLVVAPTVALMQWKNEIEQHTNKK-LSVYMYHGANRTN-NLGDFKDVDVILTTYAVLESV 300
+LVV P + QW +E+ + + V +HG NR + F+ D+++T+Y ++
Sbjct: 392 TLVVCPMSVMCQWAHEVASKVAQNAIRVLTFHGPNRHEIGIEAFRSYDLVITSYNLV--- 448
Query: 301 YRKQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLS 360
V KR T S L ++ + RVILDEAH I++ +N +V L+ W L+
Sbjct: 449 ----VNELKRYGNT----SPLFAVYWNRVILDEAHIIRNSKTNCCNSVCQLRAHCHWALT 500
Query: 361 GTPLQNRIGEMYSLIRFLNIEPFTRYYCKQCSCSSENWRFSDYLHCDDCGHVGMQHTNFF 420
GTP+QNR ++++L+RF+N+ F + W+ + L+ GH + NF
Sbjct: 501 GTPVQNRGVDVFALLRFVNVPNFQ---------DLQQWKKN--LNESMLGH---RRLNFI 546
Query: 421 NHFMLKNVQKHGIEGPG-LQSFQNIQTLLARIMLRRTKVERADDL-GLPPRIVTVRKDYF 478
++ K ++ G + + +++ L + L +T++ L + +I T +
Sbjct: 547 IKPLMLRRTKQKLQASGDMPALPSLKIELICVQLSKTEMAVYQILSAISKKIFT---QFL 603
Query: 479 NEEEKDLYQSLYSDIKR------------KYNSYVEEGVVLNNY--------ANIFTLIT 518
+ EK Y ++R +YN E + Y I L+
Sbjct: 604 LQREKGNSDLNYYSLERTPQFIAGHMSDERYNEIYERFLKSLGYNPGEKILGIYILVLLL 663
Query: 519 RMRQMADHPDLVLKRLKG 536
R+RQ HP L++ L+G
Sbjct: 664 RLRQFCCHPGLMIGMLRG 681
Score = 61.6 bits (148), Expect = 5e-09
Identities = 38/111 (34%), Positives = 58/111 (52%), Gaps = 8/111 (7%)
Query: 157 AKLYAHHSELIDVFKKLQES-----PIRQVERAPQPDGMAIRLLPFQLEGLHWLQQQEES 211
A+ Y H S +ID K L E I +E+ QP + +RLL Q L W+Q +E
Sbjct: 189 AQFYQHKSNIIDSLKTLYEPIQPRPAIDDLEK--QPALLLVRLLKHQQSCLKWMQFRERQ 246
Query: 212 DYNGGVLADEMGMGKTIQTIALLM-SDITRKPSLVVAPTVALMQWKNEIEQ 261
+GG+LAD+MG+GKT+ IAL++ S+ T+ ++W E +
Sbjct: 247 KISGGILADDMGLGKTLSMIALILASEETKNRKREEKKKALTLKWTQEFNR 297
>YGL150c [L] KOG0388 SNF2 family DNA-dependent ATPase
Length = 1489
Score = 100 bits (248), Expect = 1e-20
Identities = 95/372 (25%), Positives = 153/372 (40%), Gaps = 81/372 (21%)
Query: 186 QPDGMAIRLLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLMSDITRK---- 241
QP +A L +QL+GL+WL + NG +LADEMG+GKT+Q+I++L
Sbjct: 698 QPKILACTLKEYQLKGLNWLANLYDQGING-ILADEMGLGKTVQSISVLAHLAENHNIWG 756
Query: 242 PSLVVAPTVALMQWKNEIEQHTNKKLSVYMYHGANRTNNLGDFKD-----------VDVI 290
P LVV P L W NEI + + + + AN L F D V+
Sbjct: 757 PFLVVTPASTLHNWVNEISKFLPQFKILPYWGNANDRKVLRKFWDRKNLRYNKNAPFHVM 816
Query: 291 LTTYAVLESVYRKQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNS 350
+T+Y ++ V + + L + + +ILDEA IK S+ K + S
Sbjct: 817 VTSYQMV-----------------VTDANYLQKMKWQYMILDEAQAIKSSQSSRWKNLLS 859
Query: 351 LQTKKRWCLSGTPLQNRIGEMYSLIRFLNIEPFTRYYCKQCSCSSENWRFSDYLHCDDCG 410
+ R L+GTP+QN + E+++L+ F+ F +
Sbjct: 860 FHCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSH------------------------ 895
Query: 411 HVGMQHTNFFNHFMLKNVQKHGIEGPGL--QSFQNIQTLLARIMLRRTKVERADDLGLPP 468
+ FN + K+++ H L Q + + +L MLRR K +LG
Sbjct: 896 -------DEFNEWFSKDIESHAEANTKLNQQQLRRLHMILKPFMLRRVKKNVQSELGDKI 948
Query: 469 RIVTVRKDYFNEEEKDLYQSLYSDIKRKYNSYVEEGVVLNNYA-----------NIFTLI 517
I + + + LYQ L S I Y++ E N+ N+ +
Sbjct: 949 EIDVLCD--LTQRQAKLYQVLKSQISTNYDAI--ENAATNDSTSNSASNSGSDQNLINAV 1004
Query: 518 TRMRQMADHPDL 529
+ R++ +HPDL
Sbjct: 1005 MQFRKVCNHPDL 1016
Score = 86.7 bits (213), Expect = 1e-16
Identities = 48/144 (33%), Positives = 78/144 (53%), Gaps = 2/144 (1%)
Query: 628 STKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRD 687
S K+ L E L L+S+ + +++ Q T M+DL+E L + ++L GS R
Sbjct: 1298 SAKLRKLDELLVKLKSEGHRV--LIYFQMTKMMDLMEEYLTYRQYNHIRLDGSSKLEDRR 1355
Query: 688 QTIKYFMENIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFR 747
+ + N VFL+S +AGG+ +NL A V D WNP+++ Q+ DR HR+GQ R
Sbjct: 1356 DLVHDWQTNPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTR 1415
Query: 748 PVKITRFCIEDSIESRIIELQEKK 771
V + R + +IE R+ + ++K
Sbjct: 1416 QVTVYRLLVRGTIEERMRDRAKQK 1439
>SPAC144.05 [L] KOG0298 DEAD box-containing helicase-like transcription
factor/DNA repair protein
Length = 1375
Score = 100 bits (248), Expect = 1e-20
Identities = 100/448 (22%), Positives = 178/448 (39%), Gaps = 125/448 (27%)
Query: 155 NTAKLYAHHSELIDVFKKLQES-PIRQVERAPQPDGMAIRLLPFQLEGLHWLQQQEES-- 211
NTA Y D +KL +S V R P+ ++ LLPFQ+ L W++++EE
Sbjct: 188 NTALFY-------DCARKLAKSLRFANVSRDPR---LSSELLPFQMRVLEWMKRREEEKF 237
Query: 212 --------------------------------------------DYNGGVLADEMGMGKT 227
D GG+LADEMGMGKT
Sbjct: 238 LTSNDLPPLWYHCKSLFDDRMVYVNHVYGYMTFSKEKTYLLASGDIRGGILADEMGMGKT 297
Query: 228 IQTIALLMS-----DIT---------------RKPSLVVAPTVALMQWKNEIEQHTNKKL 267
++ + L++ +T K +L++ P+ L QW +EI+ H L
Sbjct: 298 LEVLGLVLHHQLPISLTDTCTFDQVVGKNVKYSKATLIITPSTILDQWLSEIDLHV-PSL 356
Query: 268 SVYMYHGANRTNNLGD---FKDVDVILTTYAVL--ESVYRKQ-VYGFKRKAGTVKEKSLL 321
V+ Y G ++N L F D D+++T+Y+ L E +Y + + + V KS L
Sbjct: 357 KVFHYQGIRKSNGLKSAKIFLDCDIVVTSYSDLRFELLYTESHSRTLRHEKRHVSPKSPL 416
Query: 322 HSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGTPLQNRIGEMYSLIRFLNIE 381
+ ++R+ +DEA ++ SN A+ + + W +SGTP+++ + +++ L+ L
Sbjct: 417 IDVCWWRICVDEAQMVETSQSNVAQMIYRIPRVNCWTVSGTPVRSEVDDLFGLLFLLRYS 476
Query: 382 PFTRYYCKQCSCSSENWRFSDYLHCDDCGHVGMQHTNFFNHFMLKNVQKHGIEGPGLQSF 441
P Y + E R ++ CD
Sbjct: 477 PMYLYKKQAWMQIIEKKRVREF--CD---------------------------------- 500
Query: 442 QNIQTLLARIMLRRTKVERADDLGLPPRIVTVRKDYFNEEEKDLYQSLYSDIKRKYNSYV 501
L ++ R +K + ++L LPP+ + E+ YQ L S+ + + +
Sbjct: 501 -----LFGSLVCRHSKQDVEEELKLPPQHRICMTTRLSVVEETNYQDLLSEAAKSLHFFK 555
Query: 502 EEGVVLNNYANIFTLITRMRQMADHPDL 529
+ + L + ++ + R+RQ HP +
Sbjct: 556 DRNLDLCDEESMRRWLVRLRQACCHPQV 583
Score = 89.7 bits (221), Expect = 2e-17
Identities = 62/249 (24%), Positives = 119/249 (46%), Gaps = 38/249 (15%)
Query: 546 ICQLCDDEAEEPIESKCHHRFCRLCINEYIDSFMADEKKLTCPVC----------HIGLS 595
IC +C D ++ + C H +C C+ ++ + +CP+C +IG S
Sbjct: 1091 ICIICRDIIKQGFITTCGHLYCSFCLEAWL------KHSSSCPMCKTKLNKNNAYYIGES 1144
Query: 596 IDL------------QQQALEV-DEELFKKQSIVSRLKMGGKWRSSTKIEALVEELYNLR 642
D+ + + LE+ D+E +++ +S +++ K +KI+ + + L L+
Sbjct: 1145 RDIYSRQEFVTGFNKRDERLEILDDEAYRQ---ISNMEL--KESFGSKIDTISKHLLYLK 1199
Query: 643 SDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQTIKYFMENIHCEVF 702
++ K +VFSQ+ +LD++ + G ++ G ++ +K F E +V
Sbjct: 1200 HNELYPKVVVFSQWLDVLDVLHKSFEANGIVFIRFDGK----SKNTCLKRFKEERSLQVL 1255
Query: 703 LVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIES 762
+ ++ L L A+ VF+ +P N +E Q+ RVHRIGQ RP + + +ED++E
Sbjct: 1256 TLHARSQSSGLTLTNATHVFMCEPLLNSGIEMQAISRVHRIGQTRPTFVYYYIVEDTVEG 1315
Query: 763 RIIELQEKK 771
I+ L K
Sbjct: 1316 HILNLSLTK 1324
>Hs5730067 [R] KOG0391 SNF2 family DNA-dependent ATPase
Length = 2971
Score = 100 bits (248), Expect = 1e-20
Identities = 98/372 (26%), Positives = 173/372 (46%), Gaps = 67/372 (18%)
Query: 183 RAPQPDGMAIRLLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLMSDITRK- 241
+ P P + +L +Q GL WL E NG +LADEMG+GKTIQTI+LL K
Sbjct: 410 KTPIPLLLRGQLREYQHIGLDWLVTMYEKKLNG-ILADEMGLGKTIQTISLLAHLACEKG 468
Query: 242 ---PSLVVAPTVALMQWKNEIEQHTNKKLSVYMYHGANRTNNL---GDFKD--VDVILTT 293
P L++ PT ++ W+ E+++ + Y+GA + L G K V +T+
Sbjct: 469 NWGPHLIIVPTSVMLNWEMELKRWC-PSFKILTYYGAQKERKLKRQGWTKPNAFHVCITS 527
Query: 294 YAVLESVYRKQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQT 353
Y ++ ++ F+RK N+ +ILDEA NIK+ S +++ + +
Sbjct: 528 YKLVLQDHQ----AFRRK-------------NWRYLILDEAQNIKNFKSQRWQSLLNFNS 570
Query: 354 KKRWCLSGTPLQNRIGEMYSLIRFLNIEPFTRYYCKQCSCSSENWRFSDYLHCDDCGHVG 413
++R L+GTPLQN + E++SL+ FL F Q + W FS+ L G
Sbjct: 571 QRRLLLTGTPLQNSLMELWSLMHFLMPHVF------QSHREFKEW-FSNPL-------TG 616
Query: 414 M-QHTNFFNHFMLKNVQKHGIEGPGLQSFQNIQTLLARIMLRRTKVERADDLGLPPRIVT 472
M + + +N ++K + K +L +LRR KV+ + +P +
Sbjct: 617 MIEGSQEYNEGLVKRLHK----------------VLRPFLLRRVKVD--VEKQMPKKYEH 658
Query: 473 VRKDYFNEEEKDLYQSLYSDIKRKYNSYVEEGVVLNNYANIFTLITRMRQMADHPDLVLK 532
V + ++ ++ LY + K E + ++ ++ ++ ++R++ +HP+L
Sbjct: 659 VIRCRLSKRQRCLYDDFMAQTTTK------ETLATGHFMSVINILMQLRKVCNHPNLFDP 712
Query: 533 RLKGNNDNNPGV 544
R + PG+
Sbjct: 713 RPVTSPFITPGI 724
Score = 82.8 bits (203), Expect = 2e-15
Identities = 48/142 (33%), Positives = 78/142 (54%), Gaps = 2/142 (1%)
Query: 630 KIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQT 689
K++ L L L+++ + ++F+Q T MLD++E L G ++L GS QR
Sbjct: 1785 KLQTLAVLLRQLKAEGHRV--LIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQAL 1842
Query: 690 IKYFMENIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPV 749
++ F + F++S ++GGV +NL A V D WNP+++ Q+ DR HRIGQ R V
Sbjct: 1843 MERFNADKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDV 1902
Query: 750 KITRFCIEDSIESRIIELQEKK 771
I R E ++E I++ +K
Sbjct: 1903 HIYRLISERTVEENILKKANQK 1924
>CE00789 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 971
Score = 100 bits (248), Expect = 1e-20
Identities = 65/198 (32%), Positives = 104/198 (51%), Gaps = 30/198 (15%)
Query: 197 FQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALL--MSDITRK--PSLVVAPTVAL 252
+Q+ GL+WL + + NG +LADEMG+GKT+QTI+++ M K P LV+ P L
Sbjct: 97 YQVRGLNWLASLQHNKING-ILADEMGLGKTLQTISMIGYMKHYKNKASPHLVIVPKSTL 155
Query: 253 MQWKNEIEQHTNKKLSVYMYHGANRTNNLGDFKDV------DVILTTYAVLESVYRKQVY 306
W NE ++ +V + N + +DV DV TTY ++
Sbjct: 156 QNWANEFKKWCPSINAVVLIGDEAARNQV--LRDVILPQKFDVCCTTYEMM--------- 204
Query: 307 GFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGTPLQN 366
+K K+ L +N+ +I+DEAH IK+ S ++ V L ++ R ++GTPLQN
Sbjct: 205 --------LKVKTQLKKLNWRYIIIDEAHRIKNEKSKLSETVRELNSENRLLITGTPLQN 256
Query: 367 RIGEMYSLIRFLNIEPFT 384
+ E+++L+ FL + FT
Sbjct: 257 NLHELWALLNFLLPDIFT 274
Score = 84.0 bits (206), Expect = 9e-16
Identities = 49/136 (36%), Positives = 76/136 (55%), Gaps = 9/136 (6%)
Query: 651 IVFSQFTSMLDLVE----WRLKRAGFQTVKLQGSMTPTQRDQTIK-YFMENIHCEVFLVS 705
++FSQF+ MLDL+E WR ++ +L GS R I+ Y + +F+++
Sbjct: 417 LIFSQFSRMLDLLEDFCWWR----HYEYCRLDGSTPHEDRSNAIEAYNAPDSKKFIFMLT 472
Query: 706 LKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRII 765
+AGG+ +NL A V I D WNP + Q+ DR HRIGQ + V++ R E++++ RII
Sbjct: 473 TRAGGLGINLATADVVIIYDSDWNPQSDLQAMDRAHRIGQKKQVRVFRLITENTVDERII 532
Query: 766 ELQEKKASMIHATINQ 781
E E K + + I Q
Sbjct: 533 EKAEAKLRLDNIVIQQ 548
>At5g19310 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2
and related ATPases (DNA/RNA helicase superfamily)
Length = 1041
Score = 100 bits (248), Expect = 1e-20
Identities = 66/197 (33%), Positives = 105/197 (52%), Gaps = 34/197 (17%)
Query: 194 LLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLMSDITRK----PSLVVAPT 249
L +QLEGL W+ +DYNG +LADEMG+GKTIQTIAL+ + K P L++AP
Sbjct: 363 LRSYQLEGLQWMVSLYNNDYNG-ILADEMGLGKTIQTIALIAYLLESKDLHGPHLILAPK 421
Query: 250 VALMQWKNEIEQHTNKKLSVYMYHGANRTNNL-------GDFKDVDVILTTYAVLESVYR 302
L W+NE +S ++Y G+ G F +V++T Y ++
Sbjct: 422 AVLPNWENEFALWA-PSISAFLYDGSKEKRTEIRARIAGGKF---NVLITHYDLI----- 472
Query: 303 KQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNS-LQTKKRWCLSG 361
+++K+ L I++ +I+DE H +K+ AK + + + K+R L+G
Sbjct: 473 ------------MRDKAFLKKIDWNYMIVDEGHRLKNHECALAKTLGTGYRIKRRLLLTG 520
Query: 362 TPLQNRIGEMYSLIRFL 378
TP+QN + E++SL+ FL
Sbjct: 521 TPIQNSLQELWSLLNFL 537
Score = 82.4 bits (202), Expect = 2e-15
Identities = 59/167 (35%), Positives = 86/167 (51%), Gaps = 12/167 (7%)
Query: 606 DEELFKKQSIVSRLKMGGKWRSSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEW 665
D + KK IV R+S K E L L L+ I ++FSQ T ++DL+E
Sbjct: 658 DYNMCKKPEIV---------RASGKFELLDRLLPKLKKAGHRI--LLFSQMTRLIDLLEI 706
Query: 666 RLKRAGFQTVKLQGSMTPTQRDQTIKYFME-NIHCEVFLVSLKAGGVALNLCEASQVFIL 724
L + ++L GS QR +K F E + +FL+S +AGG+ LNL A + I
Sbjct: 707 YLSLNDYMYLRLDGSTKTDQRGILLKQFNEPDSPYFMFLLSTRAGGLGLNLQTADTIIIF 766
Query: 725 DPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRIIELQEKK 771
D WNP ++ Q+ DR HRIGQ + V++ SIE I+E ++K
Sbjct: 767 DSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSIGSIEEVILERAKQK 813
>At3g06010 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2
and related ATPases (DNA/RNA helicase superfamily)
Length = 1132
Score = 99.4 bits (246), Expect = 2e-20
Identities = 67/196 (34%), Positives = 105/196 (53%), Gaps = 31/196 (15%)
Query: 194 LLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLMSDITRK----PSLVVAPT 249
L +QLEGL W+ ++ NG +LADEMG+GKTIQTI+L+ + K P L+VAP
Sbjct: 433 LRSYQLEGLQWMVSLFNNNLNG-ILADEMGLGKTIQTISLIAYLLENKGVPGPYLIVAPK 491
Query: 250 VALMQWKNEIEQHTNKKLSVYMYHG------ANRTNNLGDFKDVDVILTTYAVLESVYRK 303
L W NE ++ ++Y G A R G+ K +V++T Y ++
Sbjct: 492 AVLPNWVNEFATWV-PSIAAFLYDGRLEERKAIREKIAGEGK-FNVLITHYDLI------ 543
Query: 304 QVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKA-VNSLQTKKRWCLSGT 362
+++K+ L I +Y +I+DE H +K+ S AK + + K+R L+GT
Sbjct: 544 -----------MRDKAFLKKIEWYYMIVDEGHRLKNHESALAKTLLTGYRIKRRLLLTGT 592
Query: 363 PLQNRIGEMYSLIRFL 378
P+QN + E++SL+ FL
Sbjct: 593 PIQNSLQELWSLLNFL 608
Score = 83.2 bits (204), Expect = 1e-15
Identities = 58/167 (34%), Positives = 88/167 (51%), Gaps = 12/167 (7%)
Query: 606 DEELFKKQSIVSRLKMGGKWRSSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEW 665
D ++KK IV R+S K E L L LR I ++FSQ T ++D++E
Sbjct: 729 DYNMWKKPEIV---------RASGKFELLDRLLPKLRKAGHRI--LLFSQMTRLIDVLEI 777
Query: 666 RLKRAGFQTVKLQGSMTPTQRDQTIKYFME-NIHCEVFLVSLKAGGVALNLCEASQVFIL 724
L ++ ++L G+ QR +K F E + +FL+S +AGG+ LNL A V I
Sbjct: 778 YLTLNDYKYLRLDGTTKTDQRGLLLKQFNEPDSPYFMFLLSTRAGGLGLNLQTADTVIIF 837
Query: 725 DPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRIIELQEKK 771
D WNP ++ Q+ DR HRIGQ + V++ S+E I+E ++K
Sbjct: 838 DSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSVEEVILERAKQK 884
>YBR245c [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1129
Score = 98.6 bits (244), Expect = 3e-20
Identities = 61/194 (31%), Positives = 101/194 (51%), Gaps = 26/194 (13%)
Query: 193 RLLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALL----MSDITRKPSLVVAP 248
+L P+Q++G++WL ++ G+LADEMG+GKT+QTI+ L + P LV+AP
Sbjct: 195 QLRPYQIQGVNWLVSLHKNKI-AGILADEMGLGKTLQTISFLGYLRYIEKIPGPFLVIAP 253
Query: 249 TVALMQWKNEIEQHTNKKLSVYMYHGANRTNNLGDFK----DVDVILTTYAVLESVYRKQ 304
L W EI + T + + L K D DV++ +Y ++
Sbjct: 254 KSTLNNWLREINRWTPDVNAFILQGDKEERAELIQKKLLGCDFDVVIASYEII------- 306
Query: 305 VYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGTPL 364
++EKS L IN+ +I+DEAH IK+ S ++ + ++ R ++GTPL
Sbjct: 307 ----------IREKSPLKKINWEYIIIDEAHRIKNEESMLSQVLREFTSRNRLLITGTPL 356
Query: 365 QNRIGEMYSLIRFL 378
QN + E+++L+ FL
Sbjct: 357 QNNLHELWALLNFL 370
Score = 84.3 bits (207), Expect = 7e-16
Identities = 48/163 (29%), Positives = 88/163 (53%), Gaps = 3/163 (1%)
Query: 627 SSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQR 686
++ K++ L + L L+ + + ++FSQ + +LD++E ++ ++ GS R
Sbjct: 500 NAAKLQVLDKLLKKLKEEGSRV--LIFSQMSRLLDILEDYCYFRNYEYCRIDGSTAHEDR 557
Query: 687 DQTIK-YFMENIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQ 745
Q I Y + VFL++ +AGG+ +NL A V + D WNP + Q+ DR HRIGQ
Sbjct: 558 IQAIDDYNAPDSKKFVFLLTTRAGGLGINLTSADVVVLYDSDWNPQADLQAMDRAHRIGQ 617
Query: 746 FRPVKITRFCIEDSIESRIIELQEKKASMIHATINQDEAAINR 788
+ VK+ R ++S+E +I+E +K + I Q+ ++ +
Sbjct: 618 KKQVKVFRLVTDNSVEEKILERATQKLRLDQLVIQQNRTSLKK 660
>CE27114 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2
and related ATPases (DNA/RNA helicase superfamily)
Length = 1336
Score = 98.6 bits (244), Expect = 3e-20
Identities = 88/357 (24%), Positives = 167/357 (46%), Gaps = 81/357 (22%)
Query: 191 AIRLLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIA----LLMSDITRKPSLVV 246
+++L P+Q++GL W+ ++ NG +LADEMG+GKTIQTIA L+ T P LV+
Sbjct: 363 SLKLKPYQIKGLEWMVSLFNNNLNG-ILADEMGLGKTIQTIAFITYLMEIKKTSGPFLVI 421
Query: 247 APTVALMQWKNEIEQHTNKKLSVYMYHGANRTNNL-------GDFKDVDVILTTYAVLES 299
P + W+NE ++ + + Y G T + G F +V+LTT+ +
Sbjct: 422 VPLSTVPNWQNEFDKWA-ANVHLIAYKGPKETRKVFEPIIKSGKF---NVLLTTFEYV-- 475
Query: 300 VYRKQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNS-LQTKKRWC 358
++EK+LL + + +I+DE H +K++ + +N+ Q ++R
Sbjct: 476 ---------------IREKALLGKLRWKYMIIDEGHRLKNQHCKLTEMLNTRFQCQRRLL 520
Query: 359 LSGTPLQNRIGEMYSLIRFLNIEPFTRYYCKQCSCSS-ENWRFSDYLHCDDCGHVGMQHT 417
++GTPLQN++ E+++L+ FL F+ SCS+ E W + + + + + T
Sbjct: 521 ITGTPLQNKLPELWALLNFLLPSIFS-------SCSTFEQWFNAPFATTGEKVELTQEET 573
Query: 418 NFFNHFMLKNVQKHGIEGPGLQSFQNIQTLLARIMLRRTKVERADDLGLPPRIVTVRKDY 477
+ + + +L +LRR K E + LP ++ V +
Sbjct: 574 --------------------MLIIRRLHKVLRPFLLRRLKKEVESE--LPDKMEFVVRCD 611
Query: 478 FNEEEKDLYQSLYSDIKRKYNSYVEEGVVLNNYAN-----IFTLITRMRQMADHPDL 529
+ +K LY+ ++++G++L+ N + + +R++ +HP L
Sbjct: 612 MSALQKVLYK------------HMQKGLLLDGKTNTGSKSLRNTMIHLRKLCNHPFL 656
Score = 85.9 bits (211), Expect = 2e-16
Identities = 61/183 (33%), Positives = 92/183 (49%), Gaps = 16/183 (8%)
Query: 625 WRSSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPT 684
+R S K+E L L L++ + ++F Q TSM+ +VE L Q ++L GS P
Sbjct: 679 YRVSGKLELLSRILPKLQATGHRV--LMFFQMTSMMTIVEDFLAGGTIQYLRLDGSTKPD 736
Query: 685 QRDQTI-KYFMENIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRI 743
+R + K+ N +F++S +AGG+ LNL A V I D WNP + Q+ DR HRI
Sbjct: 737 ERGALLDKFNAPNSEYFLFMLSTRAGGLGLNLQTADTVIIFDSDWNPHQDMQAQDRAHRI 796
Query: 744 GQFRPVKITRFCIEDSIESRIIELQEKKASMIHATINQDEAAI------NRLTPADLQFL 797
GQ V++ R +S+E +I+ K +N DE I NR T A+ + +
Sbjct: 797 GQKAEVRVFRLITANSVEEKILAAARYK-------LNVDEKVIQAGKFDNRSTGAERREI 849
Query: 798 FNN 800
N
Sbjct: 850 LEN 852
>Hs21071058 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1052
Score = 98.2 bits (243), Expect = 4e-20
Identities = 66/196 (33%), Positives = 102/196 (51%), Gaps = 30/196 (15%)
Query: 193 RLLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALL--MSDITRKPS--LVVAP 248
+L +Q+ GL+WL E+ NG +LADEMG+GKT+QTI+LL M P +V+ P
Sbjct: 179 KLRDYQVRGLNWLISLYENGING-ILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVP 237
Query: 249 TVALMQWKNEIEQHTNKKLSVYMYHGANRTNNLGDFKDV------DVILTTYAVLESVYR 302
L W +E ++ SV + ++ +DV DV +T+Y +L
Sbjct: 238 KSTLHNWMSEFKRWVPTLRSVCLI--GDKEQRAAFVRDVLLPGEWDVCVTSYEML----- 290
Query: 303 KQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGT 362
+KEKS+ N+ +++DEAH IK+ S ++ V +T R L+GT
Sbjct: 291 ------------IKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGT 338
Query: 363 PLQNRIGEMYSLIRFL 378
PLQN + E++SL+ FL
Sbjct: 339 PLQNNLHELWSLLNFL 354
Score = 88.6 bits (218), Expect = 3e-17
Identities = 47/132 (35%), Positives = 75/132 (56%), Gaps = 1/132 (0%)
Query: 651 IVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQTIKYFME-NIHCEVFLVSLKAG 709
++FSQ T +LD++E ++ +L G +R +I + E N VF++S +AG
Sbjct: 503 LIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAG 562
Query: 710 GVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRIIELQE 769
G+ +NL A V + D WNP V+ Q+ DR HRIGQ + V++ RF ++++E RI+E E
Sbjct: 563 GLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAE 622
Query: 770 KKASMIHATINQ 781
K + I Q
Sbjct: 623 MKLRLDSIVIQQ 634
>YIL126w [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2
and related ATPases (DNA/RNA helicase superfamily)
Length = 1359
Score = 97.8 bits (242), Expect = 6e-20
Identities = 98/368 (26%), Positives = 171/368 (45%), Gaps = 75/368 (20%)
Query: 194 LLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALL--MSDITRK--PSLVVAPT 249
L +QL GL W+ + NG +LADEMG+GKTIQ+I+L+ + ++ + P LV+ P
Sbjct: 470 LKEYQLRGLEWMVSLYNNHLNG-ILADEMGLGKTIQSISLITYLYEVKKDIGPFLVIVPL 528
Query: 250 VALMQWKNEIEQHTNKKLSVYMYHGA-NRTNNL------GDFKDVDVILTTYAVLESVYR 302
+ W E E+ L+ +Y G N+ ++L G+F DV+LTTY +
Sbjct: 529 STITNWTLEFEKWA-PSLNTIIYKGTPNQRHSLQHQIRVGNF---DVLLTTYEYI----- 579
Query: 303 KQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNS-LQTKKRWCLSG 361
+K+KSLL ++ +I+DE H +K+ S + ++ +T+ R L+G
Sbjct: 580 ------------IKDKSLLSKHDWAHMIIDEGHRMKNAQSKLSFTISHYYRTRNRLILTG 627
Query: 362 TPLQNRIGEMYSLIRFLNIEPFTRYYCKQCSCSSENWRFSDYLHCDDCGHVGMQHTNFFN 421
TPLQN + E+++L+ F+ + F + + E+W +T F N
Sbjct: 628 TPLQNNLPELWALLNFVLPKIF------NSAKTFEDW----------------FNTPFAN 665
Query: 422 HFMLKNVQKHGIEGPGLQSFQNIQTLLARIMLRRTKVERADDLGLPPRIVTVRKDYFNEE 481
+ ++ E L + + +L +LRR K E D LP ++ V K +
Sbjct: 666 TGTQEKLEL--TEEETLLIIRRLHKVLRPFLLRRLKKEVEKD--LPDKVEKVIKCKLSGL 721
Query: 482 EKDLYQSLYSDIKRKYNSYV----EEGVVLNNYANIFTLITRMRQMADHP------DLVL 531
++ LYQ + K+N+ EG + I ++R++ +HP + V+
Sbjct: 722 QQQLYQQML-----KHNALFVGAGTEGATKGGIKGLNNKIMQLRKICNHPFVFDEVEGVV 776
Query: 532 KRLKGNND 539
+GN+D
Sbjct: 777 NPSRGNSD 784
Score = 77.8 bits (190), Expect = 6e-14
Identities = 57/183 (31%), Positives = 90/183 (49%), Gaps = 18/183 (9%)
Query: 625 WRSSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPT 684
+R + K E L L ++ + ++F Q T ++D++E L+ + ++L GS
Sbjct: 787 FRVAGKFELLDRVLPKFKASGHRV--LMFFQMTQVMDIMEDFLRMKDLKYMRLDGSTKTE 844
Query: 685 QRDQTIKYFM---ENIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVH 741
+R + + F + C FL+S +AGG+ LNL A V I D WNP + Q+ DR H
Sbjct: 845 ERTEMLNAFNAPDSDYFC--FLLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAH 902
Query: 742 RIGQFRPVKITRFCIEDSIESRIIELQEKK----ASMIHA-------TINQDEAAINRLT 790
RIGQ V+I R DS+E I+E +K +I A T + EA + RL
Sbjct: 903 RIGQKNEVRILRLITTDSVEEVILERAMQKLDIDGKVIQAGKFDNKSTAEEQEAFLRRLI 962
Query: 791 PAD 793
++
Sbjct: 963 ESE 965
>Hs20536191 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 897
Score = 97.4 bits (241), Expect = 7e-20
Identities = 91/347 (26%), Positives = 154/347 (44%), Gaps = 72/347 (20%)
Query: 192 IRLLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLMSDITRK----PSLVVA 247
I L +QLEG++WL Q+ NG +L DEMG+GKT QTIAL + R P L++
Sbjct: 44 IHLRSYQLEGVNWLAQRFHCQ-NGCILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLILC 102
Query: 248 PTVALMQWKNEIEQHTNKKLSVYMYHG-----ANRTNNLGDFKDVDVILTTYAVLESVYR 302
P L WK E+++ LS Y G A +L V+LTTY +
Sbjct: 103 PLSVLSNWKEEMQRFA-PGLSCVTYAGDKEERACLQQDLKQESRFHVLLTTYEIC----- 156
Query: 303 KQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGT 362
+K+ S L S + +++DEAH +K+++S K ++ L+GT
Sbjct: 157 ------------LKDASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGT 204
Query: 363 PLQNRIGEMYSLIRFLNIEPFTRYYCKQCSCSSENWRFSDYLHCDDCGHVGMQHTNFFNH 422
P+QN + E+YSL+ F+ + F++ ++ G +F
Sbjct: 205 PIQNSLQELYSLLSFVEPDLFSK---------------------EEVG-------DFIQR 236
Query: 423 FMLKNVQKHGIEGPGLQSFQNIQTLLARIMLRRTKVERADDLGLPPRIVTVRKDYFNEEE 482
+ ++++K +S + LL +LRR K E A + LP + V + +
Sbjct: 237 Y--QDIEKES------ESGNELHKLLQPFLLRRVKAEVATE--LPKKTEVVIYHGMSALQ 286
Query: 483 KDLYQSLYSDIKRKYNSYVEEGVVLNNYANIFTLITRMRQMADHPDL 529
K Y+++ + + + V L N +++++R+ DHP L
Sbjct: 287 KKYYKAILMKDLDAFENETAKKVKLQN------ILSQLRKCVDHPYL 327
Score = 76.6 bits (187), Expect = 1e-13
Identities = 48/148 (32%), Positives = 75/148 (50%), Gaps = 4/148 (2%)
Query: 651 IVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQTIKYFMENIHCEVFLVSLKAGG 710
++FSQ T MLD+++ + G+ ++ GS+ +R IK F + VFL+S +AGG
Sbjct: 367 LLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFGQQ-PIFVFLLSTRAGG 425
Query: 711 VALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRIIELQEK 770
V +NL A V +D +NP + Q+ R HRIGQ + VK+ R D++E +
Sbjct: 426 VGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAAS 485
Query: 771 KASMIHATINQDEAAINRLTP---ADLQ 795
K + + I + P ADLQ
Sbjct: 486 KLQLTNMIIEGGHFTLGAQKPAADADLQ 513
>7297570 [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 844
Score = 97.1 bits (240), Expect = 1e-19
Identities = 97/360 (26%), Positives = 159/360 (43%), Gaps = 80/360 (22%)
Query: 192 IRLLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLM----SDITRKPSLVVA 247
++L +Q+ GL+WL + + NG +LADEMG+GKTIQ IA L + +++ L+V
Sbjct: 287 LQLADYQIIGLNWLTVMHKQEMNG-ILADEMGLGKTIQVIAFLAYLKENGLSQAAHLIVV 345
Query: 248 PTVALMQWKNEIEQHTNKKLSVYMYHGAN--RTNNLGDF-KD----VDVILTTYAVLESV 300
P+ L W+ EI + +L V YHG+ R G F KD DV+LTTY ++ S
Sbjct: 346 PSSTLDNWEAEISRWC-PELVVEKYHGSQDERRRMRGRFAKDGFTGFDVLLTTYHIVGS- 403
Query: 301 YRKQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLS 360
T +E+ + VI DEAH +K+ T+ + ++ + R L+
Sbjct: 404 -------------TPEERKMFRVCKLDYVIFDEAHMLKNMTTQRYANLITINARMRILLT 450
Query: 361 GTPLQNRIGEMYSLIRFL-------NIEPFTRYYCKQCSCSSENWRFSDYLHCDDCGHVG 413
GTPLQN + E+ SL+ F+ +IE + K+ + S +
Sbjct: 451 GTPLQNNLLELISLLCFVMPKFFAKSIEDIKSLFAKKGKSDGDQDEVSQF---------- 500
Query: 414 MQHTNFFNHFMLKNVQKHGIEGPGLQSFQNIQTLLARIMLRRTKVERADDLGLPPRIVTV 473
Q T Q + ++ +LRR K + + LP ++ V
Sbjct: 501 -QET----------------------QIQRAKRIMKPFVLRRLKKDVLKN--LPKKLSLV 535
Query: 474 RKDYFNEEEKDLYQSL---YSDIKRKYNSYVEEGVVLNNYANIFTLITRMRQMADHPDLV 530
K + ++K Y L YS+ K + S E + ++ MR++A+HP L+
Sbjct: 536 EKVPMSSQQKIYYHELVDYYSNNKGEVCSSSERAGI--------AIMMEMRRIANHPLLM 587
Score = 82.0 bits (201), Expect = 3e-15
Identities = 51/124 (41%), Positives = 68/124 (54%)
Query: 651 IVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQTIKYFMENIHCEVFLVSLKAGG 710
++FSQFT MLD+VE L+ F +L G+ R I F + VFL+S KAGG
Sbjct: 672 LLFSQFTMMLDIVEEYLRIRKFGFCRLDGATAVNVRQDLITDFNGDDSIFVFLLSTKAGG 731
Query: 711 VALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRIIELQEK 770
V +NL A I D +NP + Q+ DR HR+GQ RPV I R E +IE I+ E+
Sbjct: 732 VGINLTAADTCVIHDIDFNPYNDKQAEDRCHRMGQQRPVTIYRLISESTIEEGILMAAEE 791
Query: 771 KASM 774
K +
Sbjct: 792 KLKL 795
>CE11450 [KL] KOG4439 RNA polymerase II transcription termination factor
TTF2/lodestar DEAD-box superfamily
Length = 518
Score = 96.7 bits (239), Expect = 1e-19
Identities = 70/192 (36%), Positives = 101/192 (52%), Gaps = 15/192 (7%)
Query: 187 PDGMAIRLLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLM----SDITRKP 242
PDG + L+P Q GL WL +E ++GG+L +MG+GKT+ I+L++ + TRK
Sbjct: 137 PDGFLVDLMPHQKAGLCWLLWRESQPHSGGILGGDMGLGKTLSMISLIVHQKAARKTRKD 196
Query: 243 S--LVVAPTVALMQWKNEIEQHTNKK-LSVYMYHGANRTNNLGDFK---DVDVILTTYAV 296
+ +AP + W+ EI + + LSV +YHG R N D K ++D L
Sbjct: 197 AGDDAIAPESLVHHWEAEIARRLKQDLLSVLVYHGNRRHINPKDLKKHIELDYDLEDEHN 256
Query: 297 LESVYRKQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKR 356
S R +V KA K S L I + VILDEAH IK+R + ++A + R
Sbjct: 257 PCSKLRPRVC---PKAD--KNSSPLARIAWSYVILDEAHIIKNRNAQCSEAACKISAFSR 311
Query: 357 WCLSGTPLQNRI 368
WCLSGTP+ N +
Sbjct: 312 WCLSGTPIHNNM 323
Score = 80.1 bits (196), Expect = 1e-14
Identities = 43/134 (32%), Positives = 77/134 (57%), Gaps = 2/134 (1%)
Query: 667 LKRAGFQTVKLQGSMTPTQRDQTIKYF-MENIHCEVFLVSLKAGGVALNLCEASQVFILD 725
++ G + G + R + + F E + L+SL AGGV LNL + + ++D
Sbjct: 375 IQEGGHGYTSITGEVAIKDRQERVDSFNQEKGGAQDMLLSLTAGGVGLNLIGGNHLIMVD 434
Query: 726 PWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRIIELQEKKASMIHATINQDEA- 784
WNP++E Q+ DR++R+GQ + V I R ++++IE R++ LQEKK ++ + +
Sbjct: 435 LHWNPALEQQACDRIYRMGQKKEVHIHRLIVKETIEQRVMSLQEKKLALAASVLEGSATR 494
Query: 785 AINRLTPADLQFLF 798
+N+LT +D++ LF
Sbjct: 495 GMNKLTNSDIRTLF 508
>CE25717 [R] KOG0391 SNF2 family DNA-dependent ATPase
Length = 1933
Score = 95.1 bits (235), Expect = 4e-19
Identities = 96/357 (26%), Positives = 164/357 (45%), Gaps = 67/357 (18%)
Query: 183 RAPQPDGMAIRLLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLM----SDI 238
+ P P + +L +Q+ GL W+ E + NG +LADEMG+GKTIQTI+LL S+
Sbjct: 586 KTPVPFLIRGQLREYQMVGLDWMVTLYEKNLNG-ILADEMGLGKTIQTISLLAHMACSES 644
Query: 239 TRKPSLVVAPTVALMQWKNEIEQHTNKKLSVYMYHGANRTN---NLGDFKD--VDVILTT 293
P L+V PT ++ W+ E ++ L + Y G + G K V +T+
Sbjct: 645 IWGPHLIVVPTSVILNWEMEFKKWC-PALKILTYFGTAKERAEKRKGWMKPNCFHVCITS 703
Query: 294 YAVLESVYRKQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQT 353
Y + + + FK++A + +ILDEA NIK+ S +A+ +++
Sbjct: 704 YKTVT----QDIRAFKQRA-------------WQYLILDEAQNIKNWKSQRWQALLNVRA 746
Query: 354 KKRWCLSGTPLQNRIGEMYSLIRFLNIEPFTRYYCKQCSCSSENWRFSDYLHCDDCGHVG 413
++R L+GTPLQN + E++SL+ FL F+ + ++W FS+ L G
Sbjct: 747 RRRLLLTGTPLQNSLMELWSLMHFLMPTIFSSH------DDFKDW-FSNPL-------TG 792
Query: 414 MQHTNF-FNHFMLKNVQKHGIEGPGLQSFQNIQTLLARIMLRRTKVERADDLGLPPRIVT 472
M N FN ++ + K +L +LRR K E + LP +
Sbjct: 793 MMEGNMEFNAPLIGRLHK----------------VLRPFILRRLKKE--VEKQLPEKTEH 834
Query: 473 VRKDYFNEEEKDLYQSLYSDIKRKYNSYVEEGVVLNNYANIFTLITRMRQMADHPDL 529
+ ++ ++ LY S K E + N ++ ++ ++R+ +HP+L
Sbjct: 835 IVNCSLSKRQRYLYDDFMSRRSTK------ENLKSGNMMSVLNIVMQLRKCCNHPNL 885
Score = 82.0 bits (201), Expect = 3e-15
Identities = 44/133 (33%), Positives = 73/133 (54%)
Query: 649 KSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQTIKYFMENIHCEVFLVSLKA 708
+ ++F+Q + MLD+++ L G+Q +L G+ QR ++ F + F++S ++
Sbjct: 1257 RCLIFTQMSKMLDVLQTFLSHHGYQYFRLDGTTGVEQRQAMMERFNADPKVFCFILSTRS 1316
Query: 709 GGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRIIELQ 768
GGV +NL A V D WNP+++ Q+ DR HRIGQ R V I R E +IE I+
Sbjct: 1317 GGVGVNLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRNVSIYRLISERTIEENILRKA 1376
Query: 769 EKKASMIHATINQ 781
+K + I++
Sbjct: 1377 TQKRRLGELAIDE 1389
>7293795 [R] KOG0383 Predicted helicase
Length = 883
Score = 95.1 bits (235), Expect = 4e-19
Identities = 54/161 (33%), Positives = 92/161 (56%), Gaps = 3/161 (1%)
Query: 620 KMGGKWRSSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQG 679
+M ++S K++ L + L L++D + ++FSQ T ML+++E L+ G+Q ++ G
Sbjct: 577 EMSSLTKASGKLDLLSKMLKQLKADNHRV--LLFSQMTKMLNVLEHFLEGEGYQYDRIDG 634
Query: 680 SMTPTQRDQTIKYFMENIHCE-VFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGD 738
S+ R + I F + + VFL+S +AGG+ +NL A V I D WNP + Q+
Sbjct: 635 SIKGDLRQKAIDRFNDPVSEHFVFLLSTRAGGLGINLATADTVIIFDSDWNPHNDVQAFS 694
Query: 739 RVHRIGQFRPVKITRFCIEDSIESRIIELQEKKASMIHATI 779
R HR+GQ + V I RF +S+E RI+++ + K + H +
Sbjct: 695 RAHRMGQKKKVMIYRFVTHNSVEERIMQVAKHKMMLTHLVV 735
Score = 83.6 bits (205), Expect = 1e-15
Identities = 65/228 (28%), Positives = 109/228 (47%), Gaps = 25/228 (10%)
Query: 167 IDVFKKLQESPIRQVERAPQPDGMAIRLLPFQLEGLHWLQQQEESDYNGG-----VLADE 221
ID+ KK ++ P+ E ++L PFQ+EG+ WL+ Y+ G +LADE
Sbjct: 247 IDLNKKYEDQPVFLKEAG-------LKLHPFQIEGVSWLR------YSWGQGIPTILADE 293
Query: 222 MGMGKTIQTIALLMSDIT----RKPSLVVAPTVALMQWKNEIEQHTNKKLSVYMYHG--A 275
MG+GKTIQT+ L S R P L+ P L W+ E+E + V G A
Sbjct: 294 MGLGKTIQTVVFLYSLFKEGHCRGPFLISVPLSTLTNWERELELWAPELYCVTYVGGKTA 353
Query: 276 NRTNNLGDFKDVDVILTTYAVLESVYRKQVYGFKRKAGTVKEKSLLHSINFYRVILDEAH 335
+ +V T ++ Y+ V + +V + + L I++ +++DEAH
Sbjct: 354 RAVIRKHEISFEEVTTKTMRENQTQYKFNVMLTSYEFISV-DAAFLGCIDWAALVVDEAH 412
Query: 336 NIKDRTSNTAKAVNSLQTKKRWCLSGTPLQNRIGEMYSLIRFLNIEPF 383
++ S + ++ + + L+GTPLQN + E++ L+ FL+ F
Sbjct: 413 RLRSNQSKFFRILSKYRIGYKLLLTGTPLQNNLEELFHLLNFLSSGKF 460
>SPAC13G6.01c [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 104
Score = 94.7 bits (234), Expect = 5e-19
Identities = 45/98 (45%), Positives = 69/98 (69%), Gaps = 1/98 (1%)
Query: 701 VFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSI 760
V ++SLKAGGV LNL A+ VFI+DPWW+ SVE Q+ DR+HR+GQ +PV +TR+ + D++
Sbjct: 6 VLIISLKAGGVGLNLTCANHVFIMDPWWSWSVEAQAIDRIHRLGQEKPVFVTRYIVRDTV 65
Query: 761 ESRIIELQEKKASMIHATINQDEAAINRLTPADLQFLF 798
E R++++QE+K + I T+ E + D++ LF
Sbjct: 66 EERMLKIQERK-NFITGTLGMSEGKQQVQSIEDIKMLF 102
>Hs4557453 [R] KOG0383 Predicted helicase
Length = 1912
Score = 94.4 bits (233), Expect = 6e-19
Identities = 56/155 (36%), Positives = 84/155 (54%), Gaps = 3/155 (1%)
Query: 626 RSSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQ 685
R+S K+ L + L NL+ + ++FSQ T MLDL+E L+ G++ ++ G +T
Sbjct: 1047 RASGKLLLLQKMLKNLKEGGHRV--LIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNM 1104
Query: 686 RDQTIKYF-MENIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIG 744
R + I F FL+S +AGG+ +NL A V I D WNP + Q+ R HRIG
Sbjct: 1105 RQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIG 1164
Query: 745 QFRPVKITRFCIEDSIESRIIELQEKKASMIHATI 779
Q + V I RF S+E RI ++ +KK + H +
Sbjct: 1165 QNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVV 1199
Score = 86.7 bits (213), Expect = 1e-16
Identities = 72/249 (28%), Positives = 119/249 (46%), Gaps = 47/249 (18%)
Query: 171 KKLQESPIRQVERAPQP----------------DGMAIRLLPFQLEGLHWLQQQEESDYN 214
KKL++ +R++ER P+ D L P+Q+EGL+WL+ +
Sbjct: 687 KKLKKVKLRKLERPPETPTVDPTVKYERQPEYLDATGGTLHPYQMEGLNWLRFSWAQGTD 746
Query: 215 GGVLADEMGMGKTIQTIALLMS----DITRKPSLVVAPTVALMQWKNEIEQHTNKKLSVY 270
+LADEMG+GKT+QT L S ++ P LV AP ++ W+ E E + V
Sbjct: 747 T-ILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWA-PDMYVV 804
Query: 271 MYHGANRTNNLGDFKDVDVIL--TTYAVLESVYR--KQVYGFKRKAGT------------ 314
Y +GD KD I+ ++ ++ R K+ K++A
Sbjct: 805 TY--------VGD-KDSRAIIRENEFSFEDNAIRGGKKASRMKKEASVKFHVLLTSYELI 855
Query: 315 VKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGTPLQNRIGEMYSL 374
+ ++L SI++ +I+DEAH +K+ S + +N + + L+GTPLQN + E++ L
Sbjct: 856 TIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHL 915
Query: 375 IRFLNIEPF 383
+ FL E F
Sbjct: 916 LNFLTPERF 924
>7303422 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1027
Score = 94.4 bits (233), Expect = 6e-19
Identities = 59/192 (30%), Positives = 100/192 (51%), Gaps = 30/192 (15%)
Query: 197 FQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALL--MSDITRK--PSLVVAPTVAL 252
+Q+ GL+W+ E+ NG +LADEMG+GKT+QTI+LL + + P +V+ P L
Sbjct: 131 YQIRGLNWMISLYENGING-ILADEMGLGKTLQTISLLGYLKHFKNQAGPHIVIVPKSTL 189
Query: 253 MQWKNEIEQHTNKKLSVYMYHGANRTNNLGDFKDV------DVILTTYAVLESVYRKQVY 306
W NE ++ +V + + N +DV DV +T+Y +
Sbjct: 190 QNWVNEFKKWCPSLRAVCLIGDQDTRNTF--IRDVLMPGEWDVCVTSYEMC--------- 238
Query: 307 GFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGTPLQN 366
++EKS+ N+ +++DEAH IK+ S ++ + +T R ++GTPLQN
Sbjct: 239 --------IREKSVFKKFNWRYLVIDEAHRIKNEKSKLSEILREFKTANRLLITGTPLQN 290
Query: 367 RIGEMYSLIRFL 378
+ E+++L+ FL
Sbjct: 291 NLHELWALLNFL 302
Score = 86.3 bits (212), Expect = 2e-16
Identities = 48/139 (34%), Positives = 75/139 (53%), Gaps = 1/139 (0%)
Query: 651 IVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQTIKYF-MENIHCEVFLVSLKAG 709
++FSQ T MLD++E + +L G R++ I+ F M+N +F++S +AG
Sbjct: 451 LIFSQMTRMLDILEDYCHWRNYNYCRLDGQTPHEDRNRQIQEFNMDNSAKFLFMLSTRAG 510
Query: 710 GVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRIIELQE 769
G+ +NL A V I D WNP ++ Q+ DR HRIGQ + V++ R E ++E +I+E E
Sbjct: 511 GLGINLATADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITESTVEEKIVERAE 570
Query: 770 KKASMIHATINQDEAAINR 788
K + I NR
Sbjct: 571 VKLRLDKMVIQGGRLVDNR 589
>YOR304w [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1120
Score = 94.0 bits (232), Expect = 8e-19
Identities = 58/191 (30%), Positives = 104/191 (54%), Gaps = 20/191 (10%)
Query: 193 RLLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALL-----MSDITRKPSLVVA 247
+L +Q++GL+WL E+ +G +LADEMG+GKT+QTI+ L + I P L++
Sbjct: 183 KLRDYQVQGLNWLISLHENKLSG-ILADEMGLGKTLQTISFLGYLRYVKQI-EGPFLIIV 240
Query: 248 PTVALMQWKNEIEQHTNKKLSVYMYHGANRTNNLGDFKDVDVILTTYAVLESVYRKQVYG 307
P L W+ E + T ++V + HG KD + +LE+ + +
Sbjct: 241 PKSTLDNWRREFLKWT-PNVNVLVLHGD---------KDTRADIVRNIILEARFDVLITS 290
Query: 308 FKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGTPLQNR 367
++ ++EK+ L + + +++DEAH IK+ S ++ + +K R ++GTPLQN
Sbjct: 291 YEM---VIREKNALKRLAWQYIVIDEAHRIKNEQSALSQIIRLFYSKNRLLITGTPLQNN 347
Query: 368 IGEMYSLIRFL 378
+ E+++L+ FL
Sbjct: 348 LHELWALLNFL 358
Score = 85.5 bits (210), Expect = 3e-16
Identities = 47/141 (33%), Positives = 79/141 (55%), Gaps = 1/141 (0%)
Query: 642 RSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQTI-KYFMENIHCE 700
R ++ + ++FSQ + +LD++E F+ ++ GS + +R + I +Y N
Sbjct: 501 RLKEKGSRVLIFSQMSRLLDILEDYCYFRDFEYCRIDGSTSHEERIEAIDEYNKPNSEKF 560
Query: 701 VFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSI 760
VFL++ +AGG+ +NL A V + D WNP + Q+ DR HRIGQ + V + RF E++I
Sbjct: 561 VFLLTTRAGGLGINLVTADTVILFDSDWNPQADLQAMDRAHRIGQKKQVHVYRFVTENAI 620
Query: 761 ESRIIELQEKKASMIHATINQ 781
E ++IE +K + I Q
Sbjct: 621 EEKVIERAAQKLRLDQLVIQQ 641
>CE05553 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2
and related ATPases (DNA/RNA helicase superfamily)
Length = 1474
Score = 93.6 bits (231), Expect = 1e-18
Identities = 63/194 (32%), Positives = 101/194 (51%), Gaps = 28/194 (14%)
Query: 194 LLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLMSDITRK----PSLVVAPT 249
L P+Q++GL W+ ++ NG +LADEMG+GKTIQTI+L+ + K P LV+ P
Sbjct: 533 LKPYQIKGLEWMVSLYNNNLNG-ILADEMGLGKTIQTISLVTYLMEVKQNNGPYLVIVPL 591
Query: 250 VALMQWKNEIEQHTNKKLSVYMYHGAN--RTNNLGDFKD--VDVILTTYAVLESVYRKQV 305
L W+NE + ++ +Y G R G + +V++TTY +
Sbjct: 592 STLSNWQNEFAKWA-PSVTTIIYKGTKDARRRVEGQIRKGAFNVLMTTYEYV-------- 642
Query: 306 YGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNS-LQTKKRWCLSGTPL 364
+KEK+LL I + +I+DE H +K+ +N + R L+GTPL
Sbjct: 643 ---------IKEKALLGKIRWKYMIIDEGHRLKNHNCKLTLMLNGFFHAQHRLLLTGTPL 693
Query: 365 QNRIGEMYSLIRFL 378
QN++ E+++L+ FL
Sbjct: 694 QNKLPELWALLNFL 707
Score = 81.3 bits (199), Expect = 6e-15
Identities = 54/162 (33%), Positives = 83/162 (50%), Gaps = 10/162 (6%)
Query: 626 RSSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQ 685
R + K+E L L L++ I ++F Q TSM+++ E L + ++L GS P +
Sbjct: 847 RVAGKLELLDRILPKLKATGHRI--LMFFQMTSMMNIFEDFLNFRRYTYLRLDGSTKPDE 904
Query: 686 RDQTIKYF-MENIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIG 744
R + F N +F++S +AGG+ LNL A V I D WNP + Q+ DR HRIG
Sbjct: 905 RGDLLTQFNAPNSDLFLFMLSTRAGGLGLNLQTADTVIIFDSDWNPHQDMQAQDRAHRIG 964
Query: 745 QFRPVKITRFCIEDSIESRIIELQEKKASMIHATINQDEAAI 786
Q + V++ R +S+E +I+ K +N DE I
Sbjct: 965 QKKEVRVLRLITANSVEEKILAAARYK-------LNVDEKVI 999
>CE11572 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1465
Score = 93.2 bits (230), Expect = 1e-18
Identities = 68/204 (33%), Positives = 106/204 (51%), Gaps = 31/204 (15%)
Query: 193 RLLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLMSDITRK----PSLVVAP 248
+L +QLEGL+W+ N +LADEMG+GKTIQ+I+LL S R P LVV P
Sbjct: 404 KLRDYQLEGLNWMVYAWCKG-NSSILADEMGLGKTIQSISLLASLFHRYDLAGPYLVVVP 462
Query: 249 TVALMQWKNEIEQHTNK-KLSVYMYHGANRTNN------LGDFKD--VDVILTTYAVLES 299
+ W+ E Q + L VYM +R +G K ++ ILTTY +L
Sbjct: 463 LSTMAAWQKEFAQWAPEMNLVVYMGDVVSRDMIRQYEWFVGGTKKMKINAILTTYEIL-- 520
Query: 300 VYRKQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCL 359
+K+K+ L SI++ +++DEAH +K+ S K++ + + +
Sbjct: 521 ---------------LKDKAFLSSIDWAALLVDEAHRLKNDESLLYKSLTQFRFNHKLLI 565
Query: 360 SGTPLQNRIGEMYSLIRFLNIEPF 383
+GTPLQN + E+++L+ F+ E F
Sbjct: 566 TGTPLQNSLKELWALLHFIMPEKF 589
Score = 85.5 bits (210), Expect = 3e-16
Identities = 52/157 (33%), Positives = 83/157 (52%), Gaps = 3/157 (1%)
Query: 626 RSSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQ 685
+SS K+ L + L L+ + ++FSQ MLD+++ L+ F + +L GSM
Sbjct: 708 KSSGKLILLDKLLCRLKDKGHRV--LIFSQMVMMLDILQEYLQLRRFPSQRLDGSMRADL 765
Query: 686 RDQTIKYFMENIHCE-VFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIG 744
R Q + ++ + FL+S +AGG+ +NL A V I D WNP + Q+ R HRIG
Sbjct: 766 RKQALDHYNAPGSTDFAFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIG 825
Query: 745 QFRPVKITRFCIEDSIESRIIELQEKKASMIHATINQ 781
Q + V I R + S+E I+E ++K + H I +
Sbjct: 826 QTKTVNIYRLVTKGSVEEEIVERAKRKLVLDHLVIQR 862
>At5g44800 [R] KOG0383 Predicted helicase
Length = 2228
Score = 93.2 bits (230), Expect = 1e-18
Identities = 103/410 (25%), Positives = 171/410 (41%), Gaps = 111/410 (27%)
Query: 162 HHSELIDVFKKLQE---------SPIRQ----VERAPQPDGM-AIRLLPFQLEGLHWLQQ 207
H S LID+F + ++ +P R+ V QP + L QLE L+WL++
Sbjct: 629 HSSHLIDLFHQYEQKTLERNSKGNPTRERGEVVTLTEQPQELRGGALFAHQLEALNWLRR 688
Query: 208 QEESDYNGGVLADEMGMGKTIQTIALLMSDI----TRKPSLVVAPTVALMQWKNE----- 258
N +LADEMG+GKT+ A L S +P LV+ P + W +E
Sbjct: 689 CWHKSKNV-ILADEMGLGKTVSASAFLSSLYFEFGVARPCLVLVPLSTMPNWLSEFSLWA 747
Query: 259 -----IEQHTNKK----LSVYMYHGANRTNNLG---DFKDVDVILTTYAVLESVYRKQVY 306
+E H + K + Y +H N T +K +V+LTTY ++
Sbjct: 748 PLLNVVEYHGSAKGRAIIRDYEWHAKNSTGTTKKPTSYK-FNVLLTTYEMV--------- 797
Query: 307 GFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGTPLQN 366
+ + S L + + +++DE H +K+ S +N+ + R L+GTPLQN
Sbjct: 798 --------LADSSHLRGVPWEVLVVDEGHRLKNSESKLFSLLNTFSFQHRVLLTGTPLQN 849
Query: 367 RIGEMYSLIRFLNIEPFTRYYCKQCSCSSENWRFSDYLHCDDCGHVGMQHTNFFNHFMLK 426
IGEMY+L+ FL F S SS RF D L
Sbjct: 850 NIGEMYNLLNFLQPSSFP-------SLSSFEERFHD----------------------LT 880
Query: 427 NVQKHGIEGPGLQSFQNIQTLLARIMLRRTKVERADDLG------LPPRIVTVRKDYFNE 480
+ +K + ++ L+A MLRR K + ++ +P + +++ +Y+
Sbjct: 881 SAEK----------VEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELTSIQAEYYRA 930
Query: 481 EEKDLYQSLYSDIKRKYNSYVEEGVVLNNYANIFTLITRMRQMADHPDLV 530
YQ L + + +GV + NI + ++R++ +HP L+
Sbjct: 931 MLTKNYQILRN---------IGKGVAQQSMLNI---VMQLRKVCNHPYLI 968
Score = 77.0 bits (188), Expect = 1e-13
Identities = 50/158 (31%), Positives = 86/158 (53%), Gaps = 4/158 (2%)
Query: 626 RSSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLK-RAGFQTV-KLQGSMTP 683
++S K+ L L L + + ++FSQ T +LD++E L G +T ++ GS+
Sbjct: 987 KASAKLTLLHSMLKVLHKEGHRV--LIFSQMTKLLDILEDYLNIEFGPKTFERVDGSVAV 1044
Query: 684 TQRDQTIKYFMENIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRI 743
R I F ++ + VFL+S +A G+ +NL A V I D +NP + Q+ +R HRI
Sbjct: 1045 ADRQAAIARFNQDKNRFVFLLSTRACGLGINLATADTVIIYDSDFNPHADIQAMNRAHRI 1104
Query: 744 GQFRPVKITRFCIEDSIESRIIELQEKKASMIHATINQ 781
GQ + + + R + S+E RI++L +KK + +N+
Sbjct: 1105 GQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNK 1142
>At3g57300 [L] KOG0388 SNF2 family DNA-dependent ATPase
Length = 1496
Score = 93.2 bits (230), Expect = 1e-18
Identities = 86/353 (24%), Positives = 146/353 (40%), Gaps = 68/353 (19%)
Query: 194 LLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLMSDITRK----PSLVVAPT 249
L +Q++GL WL E NG +LADEMG+GKTIQ +A L K P LVVAP
Sbjct: 586 LKEYQMKGLQWLVNCYEQGLNG-ILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPA 644
Query: 250 VALMQWKNEIEQHTNKKLSVYMYHGANRTNNLGDFKDVDVILTTYAVLESVYRKQVYGFK 309
L W +EI + L Y G + + + +++ K++Y +
Sbjct: 645 SVLNNWADEISRFC-PDLKTLPYWGGLQERTI--------------LRKNINPKRMY--R 687
Query: 310 RKAG----------TVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCL 359
R AG V ++ + + ++LDEA IK +S K + S + R L
Sbjct: 688 RDAGFHILITSYQLLVTDEKYFRRVKWQYMVLDEAQAIKSSSSIRWKTLLSFNCRNRLLL 747
Query: 360 SGTPLQNRIGEMYSLIRFLNIEPFTRYYCKQCSCSSENWRFSDYLHCDDCGHVGMQHTNF 419
+GTP+QN + E+++L+ F+ F + +
Sbjct: 748 TGTPIQNNMAELWALLHFIMPMLFDNH-------------------------------DQ 776
Query: 420 FNHFMLKNVQKHGIEGPGLQSFQ--NIQTLLARIMLRRTKVERADDLGLPPRIVTVRKDY 477
FN + K ++ H G L Q + +L MLRR K + +L + K
Sbjct: 777 FNEWFSKGIENHAEHGGTLNEHQLNRLHAILKPFMLRRVKKDVVSELTTKTEVTVHCK-- 834
Query: 478 FNEEEKDLYQSLYSDIKRKYNSYVEEGVVLN-NYANIFTLITRMRQMADHPDL 529
+ ++ YQ++ + I G + N+ ++ ++R++ +HP+L
Sbjct: 835 LSSRQQAFYQAIKNKISLAELFDSNRGQFTDKKVLNLMNIVIQLRKVCNHPEL 887
Score = 74.3 bits (181), Expect = 7e-13
Identities = 47/180 (26%), Positives = 88/180 (48%), Gaps = 11/180 (6%)
Query: 592 IGLSIDLQQQALEVDEELFKKQSIVSRLKMGGKWRSSTKIEALVEELYNLRSDKRTIKSI 651
I + + Q AL++ +F + S K++ L L LR+ + +
Sbjct: 1169 IDSELPVVQPALQLTHRIFGSCPPMQSFDPAKLLTDSGKLQTLDILLKRLRAGNHRV--L 1226
Query: 652 VFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQTIKYFMENIHCEVFLVSLKAGGV 711
+F+Q T ML+++E + ++ ++L GS T R ++ F VFL+S +AGG+
Sbjct: 1227 LFAQMTKMLNILEDYMNYRKYKYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGL 1286
Query: 712 ALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRIIELQEKK 771
+NL A V + WNP+++ Q+ DR HR+GQ + ++++E +I+ +K
Sbjct: 1287 GINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTK---------DETVEEKILHRASQK 1337
>CE17716 [R] KOG0383 Predicted helicase
Length = 1829
Score = 92.8 bits (229), Expect = 2e-18
Identities = 78/262 (29%), Positives = 124/262 (46%), Gaps = 41/262 (15%)
Query: 154 RNTAKLYAHHSELIDVFKKLQESPIRQVERAP-------QPDGMAI---RLLPFQLEGLH 203
+N K+ A H E + K E ++ E+ QPD + +L P+QLEGL+
Sbjct: 552 KNVQKMIAKHREAKGLPPKEDEKKKKKREKIDIRKKYEVQPDYVTETGGKLHPYQLEGLN 611
Query: 204 WLQQQEESDYNGGVLADEMGMGKTIQTIALLMSDI----TRKPSLVVAPTVALMQWKNEI 259
WL+ S+ +LADEMG+GKT+Q++ L S + + P L+ AP ++ W+ E
Sbjct: 612 WLRHCW-SNGTDAILADEMGLGKTVQSLTFLYSLMKEGHCKGPFLIAAPLSTIINWEREA 670
Query: 260 EQHTNKKLSVYMYHGANRTNNLGDFKDVDVILT--TYAVLESVYRKQVYGFKRKA----- 312
EQ V Y G +D V+L ++ +E R K K
Sbjct: 671 EQWC-PDFYVVTYVG---------LRDARVVLREHEFSFVEGAVRSGPKASKMKTTENMK 720
Query: 313 --------GTVK-EKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGTP 363
T+ +K++L SI + +++DEAH +K+ S K +N R L+GTP
Sbjct: 721 FHVLLTSYETINMDKTILSSIEWGALVVDEAHRLKNNQSLFFKNLNEYTIHYRVLLTGTP 780
Query: 364 LQNRIGEMYSLIRFLNIEPFTR 385
LQN + E++ L+ FL+ E F +
Sbjct: 781 LQNNLEELFHLLNFLSKERFNQ 802
Score = 84.0 bits (206), Expect = 9e-16
Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 3/155 (1%)
Query: 626 RSSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQ 685
++S K L + L L+ + ++FSQ T MLD++E + G++ ++ GS+
Sbjct: 923 KNSGKFVLLQKMLRKLKDGGHRV--LIFSQMTRMLDIMEDLCEYEGYRYERIDGSIMGQM 980
Query: 686 RDQTI-KYFMENIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIG 744
R I +Y +FL+S +AGG+ +NL A V I D WNP + Q+ R HR+G
Sbjct: 981 RQDAIDRYNAPGAQQFIFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLG 1040
Query: 745 QFRPVKITRFCIEDSIESRIIELQEKKASMIHATI 779
Q V I RF + S+E +I + +KK + H +
Sbjct: 1041 QKHKVMIYRFVTKKSVEEKITSVAKKKMLLNHLVV 1075
>At2g46020 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2
and related ATPases (DNA/RNA helicase superfamily)
Length = 1245
Score = 92.8 bits (229), Expect = 2e-18
Identities = 58/192 (30%), Positives = 101/192 (52%), Gaps = 25/192 (13%)
Query: 194 LLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLMSDITRK----PSLVVAPT 249
L +QL GL W+ + NG +LADEMG+GKT+Q +AL+ + K P L++ P
Sbjct: 34 LRDYQLVGLQWMLSLYNNKLNG-ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 92
Query: 250 VALMQWKNEIEQHTNKKLSVYMYHGANRTNNLGD---FKDVDVILTTYAVLESVYRKQVY 306
L+ WK+E+ +Y ++ + L F+ +V++TTY +
Sbjct: 93 AVLVNWKSELHTWLPSVSCIYYVGTKDQRSKLFSQVKFEKFNVLVTTYEFI--------- 143
Query: 307 GFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGTPLQN 366
+ ++S L +++ +I+DEA +KDR S A+ ++ + ++R L+GTPLQN
Sbjct: 144 --------MYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQN 195
Query: 367 RIGEMYSLIRFL 378
+ E++SL+ L
Sbjct: 196 DLKELWSLLNLL 207
Score = 62.0 bits (149), Expect = 3e-09
Identities = 38/102 (37%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Query: 651 IVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQTIKYFME-NIHCEVFLVSLKAG 709
++FS T +LD++E L+ ++ G+ + R+ I F + + C +FL+S++A
Sbjct: 380 LLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNDPDTDCFIFLLSIRAA 439
Query: 710 GVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKI 751
G LNL A V I DP NP E Q+ R HRIGQ R VK+
Sbjct: 440 GRGLNLQTADTVVIYDPDPNPKNEEQAVARAHRIGQTREVKV 481
>Hs4557449 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1739
Score = 92.4 bits (228), Expect = 2e-18
Identities = 73/230 (31%), Positives = 118/230 (50%), Gaps = 37/230 (16%)
Query: 171 KKLQESPIRQVERAPQP---DGMAIRLLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKT 227
K L++ P R V QP G + L +QLEGL+WL + N +LADEMG+GKT
Sbjct: 459 KALKQRP-RFVALKKQPAYLGGENLELRDYQLEGLNWLAHSWCKN-NSVILADEMGLGKT 516
Query: 228 IQTIALLMSDITRK----PSLVVAPTVALMQWKNEIEQHTNKKLSVYMYHGANRTNN-LG 282
IQTI+ L + P L+V P L W+ E E +++V +Y G + N +
Sbjct: 517 IQTISFLSYLFHQHQLYGPFLIVVPLSTLTSWQREFEIWA-PEINVVVYIGDLMSRNTIR 575
Query: 283 DFKDV---------DVILTTYAVLESVYRKQVYGFKRKAGTVKEKSLLHSINFYRVILDE 333
+++ + + ++TTY +L +K+K++L SIN+ + +DE
Sbjct: 576 EYEWIHSQTKRLKFNALITTYEIL-----------------LKDKTVLGSINWAFLGVDE 618
Query: 334 AHNIKDRTSNTAKAVNSLQTKKRWCLSGTPLQNRIGEMYSLIRFLNIEPF 383
AH +K+ S K + ++ R ++GTPLQN + E++SL+ F+ E F
Sbjct: 619 AHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKF 668
Score = 82.8 bits (203), Expect = 2e-15
Identities = 55/157 (35%), Positives = 82/157 (52%), Gaps = 3/157 (1%)
Query: 626 RSSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQ 685
RSS K+ L + L LR +R + ++FSQ MLD++ L + +L GS+
Sbjct: 788 RSSGKLILLDKLLTRLR--ERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEI 845
Query: 686 RDQTIKYF-MENIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIG 744
R Q + +F + FL+S +AGG+ +NL A V I D WNP + Q+ R HRIG
Sbjct: 846 RKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIG 905
Query: 745 QFRPVKITRFCIEDSIESRIIELQEKKASMIHATINQ 781
Q + V I R + ++E IIE +KK + H I +
Sbjct: 906 QKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQR 942
>HsM8922362 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 310
Score = 92.0 bits (227), Expect = 3e-18
Identities = 61/187 (32%), Positives = 97/187 (51%), Gaps = 17/187 (9%)
Query: 596 IDLQQQALEVDEELFKKQSIVSRLKMGGKWRSSTKIEALVEELYNLRSDKRTIKSIVFSQ 655
ID Q ++DEEL GK+ ++ ++ EL KR K ++FSQ
Sbjct: 18 IDPVTQEFKIDEELVTNS---------GKFLI---LDRMLPEL-----KKRGHKVLLFSQ 60
Query: 656 FTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQTIKYFMENIHCEVFLVSLKAGGVALNL 715
TSMLD++ F +L GSM+ ++R++ + F + +FLVS +AGG+ +NL
Sbjct: 61 MTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINL 120
Query: 716 CEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRIIELQEKKASMI 775
A V I D WNP + Q+ DR HRIGQ +PV + R ++I+ +I+E K +
Sbjct: 121 TAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLE 180
Query: 776 HATINQD 782
I+++
Sbjct: 181 KLIIHKN 187
>Hs14767157 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 348
Score = 92.0 bits (227), Expect = 3e-18
Identities = 61/187 (32%), Positives = 97/187 (51%), Gaps = 17/187 (9%)
Query: 596 IDLQQQALEVDEELFKKQSIVSRLKMGGKWRSSTKIEALVEELYNLRSDKRTIKSIVFSQ 655
ID Q ++DEEL GK+ ++ ++ EL KR K ++FSQ
Sbjct: 91 IDPVTQEFKIDEELVTNS---------GKFLI---LDRMLPEL-----KKRGHKVLLFSQ 133
Query: 656 FTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQTIKYFMENIHCEVFLVSLKAGGVALNL 715
TSMLD++ F +L GSM+ ++R++ + F + +FLVS +AGG+ +NL
Sbjct: 134 MTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINL 193
Query: 716 CEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRIIELQEKKASMI 775
A V I D WNP + Q+ DR HRIGQ +PV + R ++I+ +I+E K +
Sbjct: 194 TAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLE 253
Query: 776 HATINQD 782
I+++
Sbjct: 254 KLIIHKN 260
>At3g12810 [R] KOG0391 SNF2 family DNA-dependent ATPase
Length = 1048
Score = 91.7 bits (226), Expect = 4e-18
Identities = 47/135 (34%), Positives = 77/135 (56%)
Query: 649 KSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQTIKYFMENIHCEVFLVSLKA 708
++++F+Q T MLD++E + G+ ++L GS P +R ++ F N +F++S ++
Sbjct: 678 RALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTPPEERQTLMQRFNTNPKIFLFILSTRS 737
Query: 709 GGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRIIELQ 768
GGV +NL A V D WNP+++ Q+ DR HRIGQ R V I R E +IE I++
Sbjct: 738 GGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKA 797
Query: 769 EKKASMIHATINQDE 783
+K + + I E
Sbjct: 798 NQKRVLDNLVIQNGE 812
Score = 89.7 bits (221), Expect = 2e-17
Identities = 90/343 (26%), Positives = 149/343 (43%), Gaps = 61/343 (17%)
Query: 194 LLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLMSDITRK----PSLVVAPT 249
L +Q GL WL E NG +LADEMG+GKTI TIALL K P L+V PT
Sbjct: 121 LREYQHIGLDWLVTMYEKKLNG-ILADEMGLGKTIMTIALLAHLACDKGIWGPHLIVVPT 179
Query: 250 VALMQWKNEIEQHTNKKLSVYMYHGANRTNNLGDFKDVDVILTTYAVLESVYRKQVYG-- 307
++ W+ E + + Y G+ + L + + L ++ V + YR +
Sbjct: 180 SVMLNWETEFLKWC-PAFKILTYFGSAKERKLK--RQGWMKLNSFHVCITTYRLVIQDSK 236
Query: 308 -FKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGTPLQN 366
FKRK + +ILDEAH IK+ S + + + +K+R L+GTPLQN
Sbjct: 237 MFKRK-------------KWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQN 283
Query: 367 RIGEMYSLIRFLNIEPFTRYYCKQCSCSSENWRFSDYLHCDDCGHVGMQHTNFFNHFMLK 426
+ E++SL+ FL F + F D+ G V
Sbjct: 284 DLMELWSLMHFLMPHVF-----------QSHQEFKDWFCNPIAGMV-------------- 318
Query: 427 NVQKHGIEGPGLQSFQNIQTLLARIMLRRTKVERADDLGLPPRIVTVRKDYFNEEEKDLY 486
G E + + +L +LRR K R + LP + V ++ +++LY
Sbjct: 319 ----EGQEKINKEVIDRLHNVLRPFLLRRLK--RDVEKQLPSKHEHVIFCRLSKRQRNLY 372
Query: 487 QSLYSDIKRKYNSYVEEGVVLNNYANIFTLITRMRQMADHPDL 529
+ + ++ + + ++ + ++I ++R++ +HPDL
Sbjct: 373 EDFIA------STETQATLTSGSFFGMISIIMQLRKVCNHPDL 409
>At1g03750 [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26
(contains SNF2 family DNA-dependent ATPase domain)
Length = 874
Score = 91.7 bits (226), Expect = 4e-18
Identities = 65/208 (31%), Positives = 108/208 (51%), Gaps = 35/208 (16%)
Query: 187 PDGMAIRLLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLMS---------- 236
P + RLL Q EG+ ++ ++++ GG+L D+MG+GKTIQTIA L +
Sbjct: 144 PASINCRLLEHQREGVKFMYNLYKNNH-GGILGDDMGLGKTIQTIAFLAAVYGKDGDAGE 202
Query: 237 ----DITRKPSLVVAPTVALMQWKNEIEQHTNKKLSVYMYHGANRTNNLGDFK--DVDVI 290
+ + P L++ P+ + W++E + + V +YHG+NR L K V+V+
Sbjct: 203 SCLLESDKGPVLIICPSSIIHNWESEFSRWASF-FKVSVYHGSNRDMILEKLKARGVEVL 261
Query: 291 LTTYAVLESVYRKQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNS 350
+T++ R G V L IN+ VI DEAH +K+ S +A
Sbjct: 262 VTSFDTF------------RIQGPV-----LSGINWEIVIADEAHRLKNEKSKLYEACLE 304
Query: 351 LQTKKRWCLSGTPLQNRIGEMYSLIRFL 378
++TKKR L+GT +QN+I E+++L ++
Sbjct: 305 IKTKKRIGLTGTVMQNKISELFNLFEWV 332
Score = 82.4 bits (202), Expect = 2e-15
Identities = 48/131 (36%), Positives = 69/131 (52%)
Query: 649 KSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQTIKYFMENIHCEVFLVSLKA 708
K ++FS MLD++E L R G+ +L GS R + F + +VFL+S KA
Sbjct: 558 KILLFSYSVRMLDILEKFLIRKGYSFARLDGSTPTNLRQSLVDDFNASPSKQVFLISTKA 617
Query: 709 GGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRIIELQ 768
GG+ LNL A++V I DP WNPS + Q+ DR R GQ R V + R S+E + Q
Sbjct: 618 GGLGLNLVSANRVVIFDPNWNPSHDLQAQDRSFRYGQKRHVVVFRLLSAGSLEELVYTRQ 677
Query: 769 EKKASMIHATI 779
K + + +
Sbjct: 678 VYKQQLSNIAV 688
>YBR073w [L] KOG0390 DNA repair protein SNF2 family
Length = 958
Score = 91.3 bits (225), Expect = 5e-18
Identities = 54/157 (34%), Positives = 83/157 (52%), Gaps = 1/157 (0%)
Query: 627 SSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQR 686
+S K++ L+ L +R + K +V S +T LD++E + AG +L GS+ QR
Sbjct: 662 NSGKLKVLMTLLEGIRKGTKE-KVVVVSNYTQTLDIIENLMNMAGMSHCRLDGSIPAKQR 720
Query: 687 DQTIKYFMENIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQF 746
D + F N FL+S K+GGV LNL S++ + D WNPSV+ Q+ R+HR GQ
Sbjct: 721 DSIVTSFNRNPAIFGFLLSAKSGGVGLNLVGRSRLILFDNDWNPSVDLQAMSRIHRDGQK 780
Query: 747 RPVKITRFCIEDSIESRIIELQEKKASMIHATINQDE 783
+P I R I+ +I++ Q K S+ + E
Sbjct: 781 KPCFIYRLVTTGCIDEKILQRQLMKNSLSQKFLGDSE 817
Score = 71.6 bits (174), Expect = 4e-12
Identities = 49/195 (25%), Positives = 93/195 (47%), Gaps = 32/195 (16%)
Query: 208 QEESDYNGGVLADEMGMGKTIQTIALLMSDITRKPS--------------------LVVA 247
+ +SD +G +LAD+MG+GKT+ +I L+ + I + P LVV
Sbjct: 334 ENDSDISGCLLADDMGLGKTLMSITLIWTLIRQTPFASKVSCSQSGIPLTGLCKKILVVC 393
Query: 248 PTVALMQWKNEIEQHTN-KKLSVYMYHGANRTNNLGDFKDVD-VILTTYAVLESVYRKQV 305
P + WK E + N ++ V N D+D + + + ++ Y+ +
Sbjct: 394 PVTLIGNWKREFGKWLNLSRIGVLTLSSRNSP-------DMDKMAVRNFLKVQRTYQVLI 446
Query: 306 YGFKRKAGTVKE-KSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGTPL 364
G+++ +E + H I+ ++ DE H +K+ S + SL +++ L+GTP+
Sbjct: 447 IGYEKLLSVSEELEKNKHLIDM--LVCDEGHRLKNGASKILNTLKSLDIRRKLLLTGTPI 504
Query: 365 QNRIGEMYSLIRFLN 379
QN + E +++I F+N
Sbjct: 505 QNDLNEFFTIIDFIN 519
>Hs21071044 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1054
Score = 91.3 bits (225), Expect = 5e-18
Identities = 64/196 (32%), Positives = 102/196 (51%), Gaps = 32/196 (16%)
Query: 194 LLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALL-----MSDITRKPSLVVAP 248
L +Q+ GL+WL E+ NG +LADEMG+GKT+QTIALL +I P +V+ P
Sbjct: 183 LRDYQIRGLNWLISLYENGVNG-ILADEMGLGKTLQTIALLGYLKHYRNIPG-PHMVLVP 240
Query: 249 TVALMQWKNEIEQHTNKKLSVYMYHGANRTNNLGDFKDV------DVILTTYAVLESVYR 302
L W NE ++ L V + G ++ +D DV +T+Y ++
Sbjct: 241 KSTLHNWMNEFKRWV-PSLRVICFVG-DKDARAAFIRDEMMPGEWDVCVTSYEMV----- 293
Query: 303 KQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGT 362
+KEKS+ ++ +++DEAH IK+ S ++ V ++ R L+GT
Sbjct: 294 ------------IKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGT 341
Query: 363 PLQNRIGEMYSLIRFL 378
PLQN + E+++L+ FL
Sbjct: 342 PLQNNLHELWALLNFL 357
Score = 83.2 bits (204), Expect = 1e-15
Identities = 47/144 (32%), Positives = 77/144 (52%), Gaps = 13/144 (9%)
Query: 651 IVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRD------------QTIKYF-MENI 697
++FSQ T +LD++E G++ +L G +R+ + I+ F N
Sbjct: 506 LIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVEFLGQREAIEAFNAPNS 565
Query: 698 HCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIE 757
+F++S +AGG+ +NL A V + D WNP V+ Q+ DR HRIGQ +PV++ R +
Sbjct: 566 SKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITD 625
Query: 758 DSIESRIIELQEKKASMIHATINQ 781
+++E RI+E E K + I Q
Sbjct: 626 NTVEERIVERAEIKLRLDSIVIQQ 649
>Hs20533808 [R] KOG0383 Predicted helicase
Length = 1954
Score = 91.3 bits (225), Expect = 5e-18
Identities = 55/155 (35%), Positives = 84/155 (53%), Gaps = 3/155 (1%)
Query: 626 RSSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQ 685
+SS K+ L + L LR + + ++FSQ T MLDL+E L+ G++ ++ G +T
Sbjct: 1021 KSSGKLMLLQKMLKKLRDEGHRV--LIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGL 1078
Query: 686 RDQTIKYF-MENIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIG 744
R + I F FL+S +AGG+ +NL A V I D WNP + Q+ R HRIG
Sbjct: 1079 RQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIG 1138
Query: 745 QFRPVKITRFCIEDSIESRIIELQEKKASMIHATI 779
Q + V I RF S+E RI ++ ++K + H +
Sbjct: 1139 QNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1173
Score = 87.0 bits (214), Expect = 1e-16
Identities = 62/206 (30%), Positives = 104/206 (50%), Gaps = 23/206 (11%)
Query: 194 LLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLMS----DITRKPSLVVAPT 249
L P+QLEGL+WL+ + +LADEMG+GKT+QTI L S ++ P LV AP
Sbjct: 700 LHPYQLEGLNWLRFSWAQGTDT-ILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPL 758
Query: 250 VALMQWKNEIEQHTNKKLSVYMYHGANRTNNLGDFKDVDVILTTYAVLESVYRKQVYGFK 309
++ W+ E E V Y G + ++ ++ + A+ K+V+ K
Sbjct: 759 STIINWEREFEMWA-PDFYVVTYTGDKESRSV--IRENEFSFEDNAIRSG---KKVFRMK 812
Query: 310 RKAG------------TVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRW 357
++ ++++L SI + +++DEAH +K+ S + +NS + +
Sbjct: 813 KEVQIKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKL 872
Query: 358 CLSGTPLQNRIGEMYSLIRFLNIEPF 383
L+GTPLQN + E++ L+ FL E F
Sbjct: 873 LLTGTPLQNNLEELFHLLNFLTPERF 898
>YOR290c [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2
and related ATPases (DNA/RNA helicase superfamily)
Length = 1703
Score = 90.5 bits (223), Expect = 9e-18
Identities = 62/195 (31%), Positives = 99/195 (49%), Gaps = 30/195 (15%)
Query: 194 LLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALL-----MSDITRKPSLVVAP 248
L +Q++GL W+ + NG +LADEMG+GKTIQTI+LL M +I R P LV+ P
Sbjct: 767 LKDYQIKGLQWMVSLFNNHLNG-ILADEMGLGKTIQTISLLTYLYEMKNI-RGPYLVIVP 824
Query: 249 TVALMQWKNEIEQHTNKKLSVYMYHGANRTNNLGDFK----DVDVILTTYAVLESVYRKQ 304
L W +E + L + G+ K + DV+LTT+ +
Sbjct: 825 LSTLSNWSSEFAKWA-PTLRTISFKGSPNERKAKQAKIRAGEFDVVLTTFEYI------- 876
Query: 305 VYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNS-LQTKKRWCLSGTP 363
+KE++LL + + +I+DE H +K+ S + +N+ R L+GTP
Sbjct: 877 ----------IKERALLSKVKWVHMIIDEGHRMKNAQSKLSLTLNTHYHADYRLILTGTP 926
Query: 364 LQNRIGEMYSLIRFL 378
LQN + E+++L+ F+
Sbjct: 927 LQNNLPELWALLNFV 941
Score = 81.3 bits (199), Expect = 6e-15
Identities = 49/148 (33%), Positives = 78/148 (52%), Gaps = 3/148 (2%)
Query: 625 WRSSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPT 684
WR + K E L L L++ + ++F Q T ++D++E L+ + ++L G
Sbjct: 1083 WRVAGKFELLDRILPKLKATGHRV--LIFFQMTQIMDIMEDFLRYINIKYLRLDGHTKSD 1140
Query: 685 QRDQTIKYF-MENIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRI 743
+R + ++ F + F++S +AGG+ LNL A V I D WNP + Q+ DR HRI
Sbjct: 1141 ERSELLRLFNAPDSEYLCFILSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRI 1200
Query: 744 GQFRPVKITRFCIEDSIESRIIELQEKK 771
GQ V+I R +S+E I+E KK
Sbjct: 1201 GQKNEVRILRLITTNSVEEVILERAYKK 1228
>At2g13370 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1738
Score = 90.5 bits (223), Expect = 9e-18
Identities = 57/156 (36%), Positives = 80/156 (50%), Gaps = 3/156 (1%)
Query: 627 SSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQR 686
SS K+ L + L LR K + ++FSQ MLD++ L GFQ +L GS R
Sbjct: 951 SSGKLVILDKLLVRLRETKHRV--LIFSQMVRMLDILAEYLSLRGFQFQRLDGSTKAELR 1008
Query: 687 DQTIKYFMENIHCEV-FLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQ 745
Q + +F + FL+S +AGG+ +NL A V I D WNP + Q+ R HRIGQ
Sbjct: 1009 QQAMDHFNAPASDDFCFLLSTRAGGLGINLATADTVVIFDSDWNPQNDLQAMSRAHRIGQ 1068
Query: 746 FRPVKITRFCIEDSIESRIIELQEKKASMIHATINQ 781
V I RF S+E I+E ++K + H I +
Sbjct: 1069 QEVVNIYRFVTSKSVEEEILERAKRKMVLDHLVIQK 1104
Score = 86.7 bits (213), Expect = 1e-16
Identities = 61/200 (30%), Positives = 105/200 (52%), Gaps = 33/200 (16%)
Query: 194 LLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALL----MSDITRKPSLVVAPT 249
L +QLEGL++L +D N +LADEMG+GKT+Q++++L + P LVV P
Sbjct: 641 LRDYQLEGLNFLVNSWLNDTNV-ILADEMGLGKTVQSVSMLGFLQNTQQIPGPFLVVVPL 699
Query: 250 VALMQWKNEIEQHTNKKLSVYMYHGA-------NRTNNL---GDFKDVDVILTTYAVLES 299
L W E + +++ +Y G N+TN++ G + +LTTY V+
Sbjct: 700 STLANWAKEFRKWL-PGMNIIVYVGTRASREVRNKTNDVHKVGRPIKFNALLTTYEVV-- 756
Query: 300 VYRKQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCL 359
+K+K++L I + +++DEAH +K+ + A+ TK + +
Sbjct: 757 ---------------LKDKAVLSKIKWIYLMVDEAHRLKNSEAQLYTALLEFSTKNKLLI 801
Query: 360 SGTPLQNRIGEMYSLIRFLN 379
+GTPLQN + E+++L+ FL+
Sbjct: 802 TGTPLQNSVEELWALLHFLD 821
>7295868 [L] KOG0390 DNA repair protein SNF2 family
Length = 784
Score = 90.1 bits (222), Expect = 1e-17
Identities = 91/359 (25%), Positives = 155/359 (42%), Gaps = 62/359 (17%)
Query: 194 LLPFQLEGLHWLQQQEES---DYNGGVLADEMGMGKTIQTIALLMSDITRKP-------- 242
L P Q EG+ ++ + E ++NG ++ADEMG+GKT+Q + L+ + + + P
Sbjct: 156 LRPHQREGVRFMYECVEGKRGNFNGCIMADEMGLGKTLQCVTLVWTLLRQGPECKPTINK 215
Query: 243 SLVVAPTVALMQWKNEIEQHTNKKLSVYMYHGANRTNN---LGDFKDVDVILTTYAVLES 299
++VV+P+ + W+ E + + +L G + N L F L T +L S
Sbjct: 216 AIVVSPSSLVKNWEKEFTKWLHGRLLCLPMEGGTKENTIRALEQFSMTSARLGTPVLLIS 275
Query: 300 VYRKQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCL 359
++Y +L VI DE H +K+ + T +A+ L+TK+R L
Sbjct: 276 YETFRIYA-----------EILCKYEVGMVICDEGHRLKNSDNLTYQALMGLKTKRRVLL 324
Query: 360 SGTPLQNRIGEMYSLIRFLNIEPFTRYYCKQCSCSSENWRFSDYLHCDDCGHVGMQHTNF 419
SGTP+QN + E YSL+ F+N E G + N
Sbjct: 325 SGTPIQNDLTEYYSLVNFVNPEML--------------------------GTAAVFKRN- 357
Query: 420 FNHFMLKNVQKHGIEGPGLQSFQNIQTLLARI---MLRRTKVERADDLGLPPRIVTVRKD 476
F +L+ E ++ + Q L+ + ++RRT L + +V K
Sbjct: 358 FESAILRGQNTDSTEQERQRAIEKTQELIGLVDQCIIRRTNQILTKYLPVKFEMVICAK- 416
Query: 477 YFNEEEKDLYQS-LYSDIKRKYNSYVEEGVVLNNYANIFTLITRMRQMADHPDLVLKRL 534
+ +LY + L SD R+ + E L A+I TL +++ HPDL+ ++L
Sbjct: 417 -LTAIQLELYTNFLKSDQVRRSLADCNEKASLTALADITTL----KKICSHPDLIYEKL 470
Score = 89.7 bits (221), Expect = 2e-17
Identities = 53/151 (35%), Positives = 85/151 (56%), Gaps = 1/151 (0%)
Query: 649 KSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQTIKYFME-NIHCEVFLVSLK 707
K ++ S +T LDL E ++ + V+L G+M+ +R + + F + +F++S K
Sbjct: 518 KVVLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDPESDSFLFMLSSK 577
Query: 708 AGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRIIEL 767
AGG LNL A+++F+ DP WNP+ + Q+ RV R GQ +P I R SIE +I++
Sbjct: 578 AGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQR 637
Query: 768 QEKKASMIHATINQDEAAINRLTPADLQFLF 798
Q K S+ I+ +E+A T DL+ LF
Sbjct: 638 QTHKKSLSSTIIDNNESAEKHFTRDDLKDLF 668
>Hs4557451 [R] KOG0383 Predicted helicase
Length = 1944
Score = 89.7 bits (221), Expect = 2e-17
Identities = 55/159 (34%), Positives = 82/159 (50%), Gaps = 3/159 (1%)
Query: 622 GGKWRSSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSM 681
G +SS K+ L + L L+ + ++FSQ T MLDL+E L G++ ++ G +
Sbjct: 1053 GALIKSSGKLMLLQKMLRKLKEQGHRV--LIFSQMTKMLDLLEDFLDYEGYKYERIDGGI 1110
Query: 682 TPTQRDQTIKYF-MENIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRV 740
T R + I F FL+S +AGG+ +NL A V I D WNP + Q+ R
Sbjct: 1111 TGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRA 1170
Query: 741 HRIGQFRPVKITRFCIEDSIESRIIELQEKKASMIHATI 779
HRIGQ V I RF S+E RI ++ ++K + H +
Sbjct: 1171 HRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVV 1209
Score = 84.0 bits (206), Expect = 9e-16
Identities = 62/203 (30%), Positives = 100/203 (48%), Gaps = 23/203 (11%)
Query: 197 FQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLMS----DITRKPSLVVAPTVAL 252
+QLEGL+WL+ + +LADEMG+GKTIQTI L S T+ P LV AP +
Sbjct: 739 YQLEGLNWLRFSWAQGTDT-ILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTI 797
Query: 253 MQWKNEIEQHTNKKLSVYMYHGANRTNNLGDFKDVDVILTTYAVLESVYRKQVYGFKRKA 312
+ W+ E + K V Y G + + ++ + A+ K+ + KR+A
Sbjct: 798 INWEREFQMWA-PKFYVVTYTGDKDSRAI--IRENEFSFEDNAIKGG---KKAFKMKREA 851
Query: 313 GT------------VKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLS 360
+++ L SI + +++DEAH +K+ S + +N + + L+
Sbjct: 852 QVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLT 911
Query: 361 GTPLQNRIGEMYSLIRFLNIEPF 383
GTPLQN + E++ L+ FL E F
Sbjct: 912 GTPLQNNLEELFHLLNFLTPERF 934
>Hs4557447 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1709
Score = 89.7 bits (221), Expect = 2e-17
Identities = 62/177 (35%), Positives = 90/177 (50%), Gaps = 8/177 (4%)
Query: 606 DEELFKKQSIVSRLKMGGKWRSSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEW 665
+ E + KQ + L RSS K+ L + L LR +R + ++FSQ MLD++
Sbjct: 770 NNEFYNKQEALQHLI-----RSSGKLILLDKLLIRLR--ERGNRVLIFSQMVRMLDILAE 822
Query: 666 RLKRAGFQTVKLQGSMTPTQRDQTIKYF-MENIHCEVFLVSLKAGGVALNLCEASQVFIL 724
LK F +L GS+ R Q + +F E FL+S +AGG+ +NL A V I
Sbjct: 823 YLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIF 882
Query: 725 DPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRIIELQEKKASMIHATINQ 781
D WNP + Q+ R HRIGQ + V I R + S+E I+E +KK + H I +
Sbjct: 883 DSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQR 939
Score = 89.0 bits (219), Expect = 3e-17
Identities = 62/208 (29%), Positives = 101/208 (47%), Gaps = 31/208 (14%)
Query: 192 IRLLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLMSDITRK----PSLVVA 247
+ L +QL GL+WL N +LADEMG+GKTIQTI+ L P L+V
Sbjct: 479 LELRDYQLNGLNWLAHSWCKG-NSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVV 537
Query: 248 PTVALMQWKNEIEQHTNKKLSVYMYHGANRTNNLGDFK---------DVDVILTTYAVLE 298
P L W+ EI+ ++ +V N N + + +++LTTY +L
Sbjct: 538 PLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWTHHQTKRLKFNILLTTYEIL- 596
Query: 299 SVYRKQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWC 358
+K+K+ L +N+ + +DEAH +K+ S K + ++ R
Sbjct: 597 ----------------LKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLL 640
Query: 359 LSGTPLQNRIGEMYSLIRFLNIEPFTRY 386
++GTPLQN + E++SL+ F+ E F+ +
Sbjct: 641 ITGTPLQNSLKELWSLLHFIMPEKFSSW 668
>SPCC1235.05c [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 1284
Score = 89.4 bits (220), Expect = 2e-17
Identities = 55/150 (36%), Positives = 79/150 (52%), Gaps = 2/150 (1%)
Query: 625 WRSSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPT 684
W S KI L E L ++ + I ++FSQFT MLD++E L V+L GS
Sbjct: 920 WMDSGKIRVLKELLPKMKEEGSRI--LLFSQFTQMLDILEQVLDTLKISYVRLDGSTQVE 977
Query: 685 QRDQTIKYFMENIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIG 744
R I F + VFL+S KAGG +NL A+ V + D +NP + Q+ DR HR+G
Sbjct: 978 VRQDIIDQFHKEEDVTVFLLSTKAGGFGINLACANVVILYDCSYNPFDDLQAEDRAHRVG 1037
Query: 745 QFRPVKITRFCIEDSIESRIIELQEKKASM 774
Q R V + R +++IE I +L K ++
Sbjct: 1038 QVREVTVIRLITDNTIEEYIQKLANTKLAL 1067
Score = 87.0 bits (214), Expect = 1e-16
Identities = 67/207 (32%), Positives = 104/207 (49%), Gaps = 33/207 (15%)
Query: 186 QPDGMA--IRLLPFQLEGLHWLQ---QQEESDYNGGVLADEMGMGKTIQTI---ALLMSD 237
QP +A ++L +QL G++WL QQ+ S G+LADEMG+GKT Q + ALL+
Sbjct: 540 QPKTLASDVQLKSYQLVGVNWLHLLYQQKLS----GILADEMGLGKTCQVVAFFALLLEQ 595
Query: 238 ITRKPSLVVAPTVALMQWKNEIEQHTNKKLSVYMYHGANRTN-NLGDFKD-----VDVIL 291
P LVV P+ L W E+ + L V Y+G+ + N+ + + D+++
Sbjct: 596 GHHGPHLVVVPSSTLENWLRELARFC-PSLRVEPYYGSQQERANIREAIEENEIKYDILV 654
Query: 292 TTYAVLESVYRKQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSL 351
TTY + +++S L NF + DE H +K+R S K + +L
Sbjct: 655 TTYQL--------------ATNNKEDRSFLKHQNFDVCVYDEGHYLKNRMSERYKHLMNL 700
Query: 352 QTKKRWCLSGTPLQNRIGEMYSLIRFL 378
R L+GTPLQN + E+ SL+ F+
Sbjct: 701 NANFRLLLTGTPLQNNLKELVSLLAFI 727
>Hs21071056 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1647
Score = 89.4 bits (220), Expect = 2e-17
Identities = 53/151 (35%), Positives = 82/151 (54%), Gaps = 3/151 (1%)
Query: 625 WRSSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPT 684
+R+S K E L L LR+ K ++F Q TS++ ++E GF+ ++L G+
Sbjct: 1076 YRASGKFELLDRILPKLRATNH--KVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAE 1133
Query: 685 QRDQTIKYFME-NIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRI 743
R +K F E +FL+S +AGG+ LNL A V I D WNP + Q+ DR HRI
Sbjct: 1134 DRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRI 1193
Query: 744 GQFRPVKITRFCIEDSIESRIIELQEKKASM 774
GQ V++ R C +S+E +I+ + K ++
Sbjct: 1194 GQQNEVRVLRLCTVNSVEEKILAAAKYKLNV 1224
Score = 88.6 bits (218), Expect = 3e-17
Identities = 67/213 (31%), Positives = 106/213 (49%), Gaps = 32/213 (15%)
Query: 194 LLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLMSDITRK----PSLVVAPT 249
L +Q++GL WL ++ NG +LADEMG+GKTIQTIAL+ + K P L++ P
Sbjct: 754 LKQYQIKGLEWLVSLYNNNLNG-ILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPL 812
Query: 250 VALMQWKNEIEQHTNKKLSV-YMYHGANRTNNLGDFKD--VDVILTTYAVLESVYRKQVY 306
L W E ++ + V Y A R + + +V+LTTY +
Sbjct: 813 STLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYI--------- 863
Query: 307 GFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNS-LQTKKRWCLSGTPLQ 365
+K+K +L I + +I+DE H +K+ + +N+ +R L+GTPLQ
Sbjct: 864 --------IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQ 915
Query: 366 NRIGEMYSLIRFLNIEPFTRYYCKQCSCSSENW 398
N++ E+++L+ FL F K CS + E W
Sbjct: 916 NKLPELWALLNFLLPTIF-----KSCS-TFEQW 942
>Hs21071050 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2
and related ATPases (DNA/RNA helicase superfamily)
Length = 1568
Score = 89.0 bits (219), Expect = 3e-17
Identities = 69/227 (30%), Positives = 112/227 (48%), Gaps = 34/227 (14%)
Query: 182 ERAPQPDGMAIR--LLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLMSDIT 239
ER + + I L +QL+GL W+ ++ NG +LADEMG+GKTIQTIAL+ +
Sbjct: 706 ERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNG-ILADEMGLGKTIQTIALITYLME 764
Query: 240 RK----PSLVVAPTVALMQWKNEIEQHTNKKLSV-YMYHGANRTNNLGDFKD--VDVILT 292
K P L++ P L W E ++ + + Y A R + + + +V+LT
Sbjct: 765 HKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLT 824
Query: 293 TYAVLESVYRKQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNS-L 351
TY + +K+K +L I + +I+DE H +K+ + +N+
Sbjct: 825 TYEYI-----------------IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHY 867
Query: 352 QTKKRWCLSGTPLQNRIGEMYSLIRFLNIEPFTRYYCKQCSCSSENW 398
+R L+GTPLQN++ E+++L+ FL F K CS + E W
Sbjct: 868 VAPRRILLTGTPLQNKLPELWALLNFLLPTIF-----KSCS-TFEQW 908
Score = 83.6 bits (205), Expect = 1e-15
Identities = 51/151 (33%), Positives = 80/151 (52%), Gaps = 3/151 (1%)
Query: 625 WRSSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPT 684
+R+S K E L L LR+ + ++F Q TS++ ++E F ++L G+
Sbjct: 1042 YRASGKFELLDRILPKLRATNHRV--LLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSE 1099
Query: 685 QRDQTIKYFME-NIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRI 743
R +K F E +FL+S +AGG+ LNL A V I D WNP + Q+ DR HRI
Sbjct: 1100 DRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRI 1159
Query: 744 GQFRPVKITRFCIEDSIESRIIELQEKKASM 774
GQ V++ R C +S+E +I+ + K ++
Sbjct: 1160 GQQNEVRVLRLCTVNSVEEKILAAAKYKLNV 1190
>Hs21071048 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2
and related ATPases (DNA/RNA helicase superfamily)
Length = 1586
Score = 89.0 bits (219), Expect = 3e-17
Identities = 69/227 (30%), Positives = 112/227 (48%), Gaps = 34/227 (14%)
Query: 182 ERAPQPDGMAIR--LLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLMSDIT 239
ER + + I L +QL+GL W+ ++ NG +LADEMG+GKTIQTIAL+ +
Sbjct: 706 ERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNG-ILADEMGLGKTIQTIALITYLME 764
Query: 240 RK----PSLVVAPTVALMQWKNEIEQHTNKKLSV-YMYHGANRTNNLGDFKD--VDVILT 292
K P L++ P L W E ++ + + Y A R + + + +V+LT
Sbjct: 765 HKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLT 824
Query: 293 TYAVLESVYRKQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNS-L 351
TY + +K+K +L I + +I+DE H +K+ + +N+
Sbjct: 825 TYEYI-----------------IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHY 867
Query: 352 QTKKRWCLSGTPLQNRIGEMYSLIRFLNIEPFTRYYCKQCSCSSENW 398
+R L+GTPLQN++ E+++L+ FL F K CS + E W
Sbjct: 868 VAPRRILLTGTPLQNKLPELWALLNFLLPTIF-----KSCS-TFEQW 908
Score = 83.6 bits (205), Expect = 1e-15
Identities = 51/151 (33%), Positives = 80/151 (52%), Gaps = 3/151 (1%)
Query: 625 WRSSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPT 684
+R+S K E L L LR+ + ++F Q TS++ ++E F ++L G+
Sbjct: 1042 YRASGKFELLDRILPKLRATNHRV--LLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSE 1099
Query: 685 QRDQTIKYFME-NIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRI 743
R +K F E +FL+S +AGG+ LNL A V I D WNP + Q+ DR HRI
Sbjct: 1100 DRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRI 1159
Query: 744 GQFRPVKITRFCIEDSIESRIIELQEKKASM 774
GQ V++ R C +S+E +I+ + K ++
Sbjct: 1160 GQQNEVRVLRLCTVNSVEEKILAAAKYKLNV 1190
>7294205 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2
and related ATPases (DNA/RNA helicase superfamily)
Length = 1638
Score = 89.0 bits (219), Expect = 3e-17
Identities = 68/214 (31%), Positives = 108/214 (49%), Gaps = 34/214 (15%)
Query: 194 LLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLMSDITRK----PSLVVAPT 249
L +Q++GL WL ++ NG +LADEMG+GKTIQTI+L+ + RK P L++ P
Sbjct: 773 LKEYQIKGLEWLVSLYNNNLNG-ILADEMGLGKTIQTISLVTYLMDRKKVMGPYLIIVPL 831
Query: 250 VALMQWKNEIEQHTNKKLSVYMYHGANRTNNLGDFK----DVDVILTTYAVLESVYRKQV 305
L W E E+ + V Y G+ + L + +V+LTTY +
Sbjct: 832 STLPNWVLEFEKWA-PAVGVVSYKGSPQGRRLLQNQMRATKFNVLLTTYEYV-------- 882
Query: 306 YGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNS-LQTKKRWCLSGTPL 364
+K+K++L I + +I+DE H +K+ + +N+ R L+GTPL
Sbjct: 883 ---------IKDKAVLAKIQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPYRLLLTGTPL 933
Query: 365 QNRIGEMYSLIRFLNIEPFTRYYCKQCSCSSENW 398
QN++ E+++L+ FL F K CS + E W
Sbjct: 934 QNKLPELWALLNFLLPSIF-----KSCS-TFEQW 961
Score = 77.8 bits (190), Expect = 6e-14
Identities = 50/151 (33%), Positives = 77/151 (50%), Gaps = 3/151 (1%)
Query: 625 WRSSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPT 684
+R S K E L L L++ + ++F Q T + ++E L F ++L G+
Sbjct: 1094 YRVSGKFELLDRILPKLKATNHRV--LLFCQMTQCMTIIEDYLGWRQFGYLRLDGTTKAE 1151
Query: 685 QRDQTIKYF-MENIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRI 743
R + ++ F + VFL+S +AGG+ LNL A V I D WNP + Q+ DR HRI
Sbjct: 1152 DRGELLRKFNAKGSDVFVFLLSTRAGGLGLNLQTADTVVIFDSDWNPHQDLQAQDRAHRI 1211
Query: 744 GQFRPVKITRFCIEDSIESRIIELQEKKASM 774
GQ V++ R +S+E RI+ K +M
Sbjct: 1212 GQRNEVRVLRLMTVNSVEERILAAARYKLNM 1242
>SPAC3G6.12 [L] KOG0388 SNF2 family DNA-dependent ATPase
Length = 1063
Score = 88.2 bits (217), Expect = 5e-17
Identities = 60/209 (28%), Positives = 104/209 (49%), Gaps = 35/209 (16%)
Query: 186 QPDGMAIRLLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLM----SDITRK 241
QP + +L +QL+GL+WL E NG +LADEMG+GKT+Q+I+++ +
Sbjct: 834 QPKMLMCKLKEYQLKGLNWLANLYEQGING-ILADEMGLGKTVQSISVMAYLAETHNIWG 892
Query: 242 PSLVVAPTVALMQWKNEIEQHTNKKLSVYMYHGANRTNNL------------GDFKDVDV 289
P LV+AP L W+ EI + KL Y G+ + + + V
Sbjct: 893 PFLVIAPASTLHNWQQEITRFV-PKLKCIPYWGSTKDRKILRKFWCRKNMTYDENSPFHV 951
Query: 290 ILTTYAVLESVYRKQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVN 349
++T+Y ++ V + S+ + +ILDEA IK +S+ K++
Sbjct: 952 VVTSYQLV-----------------VLDAQYFQSVKWQYMILDEAQAIKSSSSSRWKSLL 994
Query: 350 SLQTKKRWCLSGTPLQNRIGEMYSLIRFL 378
+ + + R L+GTP+QN + E+++L+ F+
Sbjct: 995 AFKCRNRLLLTGTPIQNTMQELWALLHFI 1023
>SPAC1250.01 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2
and related ATPases (DNA/RNA helicase superfamily)
Length = 1199
Score = 88.2 bits (217), Expect = 5e-17
Identities = 64/198 (32%), Positives = 99/198 (49%), Gaps = 34/198 (17%)
Query: 193 RLLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLMSDITRK----PSLVVAP 248
+L +QL GL W+ + NG +LADEMG+GKTIQTI+L+ I +K P LV+ P
Sbjct: 416 KLKEYQLRGLQWMISLYNNHLNG-ILADEMGLGKTIQTISLITHLIEKKRQNGPFLVIVP 474
Query: 249 TVALMQWKNEIEQHTNKKLSVYMYHGANRTNNL----GDFKDVDVILTTYAVLESVYRKQ 304
L W E E+ + + +Y G + + V+LTTY +
Sbjct: 475 LSTLTNWTMEFERWAPSIVKI-VYKGPPQVRKALHPQVRHSNFQVLLTTYEYI------- 526
Query: 305 VYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQT----KKRWCLS 360
+K++ LL I + +I+DE H +K+ S K N+L T + R L+
Sbjct: 527 ----------IKDRPLLSRIKWIYMIIDEGHRMKNTQS---KLTNTLTTYYSSRYRLILT 573
Query: 361 GTPLQNRIGEMYSLIRFL 378
GTPLQN + E+++L+ F+
Sbjct: 574 GTPLQNNLPELWALLNFV 591
Score = 81.3 bits (199), Expect = 6e-15
Identities = 58/171 (33%), Positives = 86/171 (49%), Gaps = 6/171 (3%)
Query: 625 WRSSTKIEALVEELYNL-RSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTP 683
WR S K E L L L RS R + +F Q T +++++E L ++ ++L GS
Sbjct: 732 WRVSGKFELLDRILPKLFRSGHRIL---MFFQMTQIMNIMEDYLHYRQWRYLRLDGSTKA 788
Query: 684 TQRDQTIKYFME-NIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHR 742
R + + F + +FL+S +AGG+ LNL A V I D WNP + Q+ DR HR
Sbjct: 789 DDRSKLLGVFNDPTAEVNLFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHR 848
Query: 743 IGQFRPVKITRFCIEDSIESRIIELQEKKASMIHATINQDEAAINRLTPAD 793
IGQ + V+I R E S+E I+ + K I + Q N+ TP +
Sbjct: 849 IGQTKEVRIYRLITEKSVEENILARAQYKLD-IDGKVIQAGKFDNKSTPEE 898
>CE11028 [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26
(contains SNF2 family DNA-dependent ATPase domain)
Length = 1785
Score = 87.8 bits (216), Expect = 6e-17
Identities = 93/394 (23%), Positives = 158/394 (39%), Gaps = 82/394 (20%)
Query: 164 SELIDVFKKLQESPIRQVERAPQPDGMAIRLLPFQLEGLHWLQQQEESDYNGGVLADEMG 223
SEL+D E + + G+ +L FQ EG+ WLQ++ + +GG+LADEMG
Sbjct: 164 SELVDTRMVTSEEYGKSSKPWKVNAGVWNKLHKFQQEGVEWLQKKTDHR-SGGILADEMG 222
Query: 224 MGKTIQTIALLMS--DITRK--------PSLVVAPTVALMQWKNEIEQHTNKKLSVYMYH 273
+GKTIQ++ L S + R +L+V + QW E+ Q K V++ H
Sbjct: 223 LGKTIQSVVFLRSIQETARTHYKTTGLDTALIVCHVSIIAQWIKELNQWF-PKARVFLLH 281
Query: 274 GANRTNNLGDF---------------KDVDVILTTYAVLESVYRKQVYGFKRKAGTVKEK 318
T D+ D +ILTTY++ K K VK
Sbjct: 282 SHCSTGRQEDYVGSIFRKLQRRRKEYPDGAIILTTYSLFT----------KLKKPIVKHL 331
Query: 319 SLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGTPLQNRIGEMYSLIRFL 378
+ VILDE H I++ + + A+ L T +R+ L+GTP QNR+
Sbjct: 332 -------WQVVILDEGHYIRNENTKCSIAMRKLMTTQRFILTGTPFQNRL---------- 374
Query: 379 NIEPFTRYYCKQCSCSSENWRFSDYLHCDDCGHVGMQHTNFFNHFMLKNVQKHGIEGPGL 438
SE W+ D++H H N F H + +
Sbjct: 375 ----------------SEFWKLVDFVHPGRLSDSATFHRN-FTHIINAGANLNCSPEAAA 417
Query: 439 QSFQNIQTL---LARIMLRRTKVERADDLGLPPRIVTVRKDYFNEEEKDLYQSLYSDIKR 495
++++ + L + ++LRR + + + L LP + V ++ ++ LY
Sbjct: 418 KAYECLVALHIAVKPLILRRLQEDHKEVLQLPEKQEIVLSCELSKRQRRLYM-------- 469
Query: 496 KYNSYVEEGVVLNNYANIFTLITRMRQMADHPDL 529
+Y + + ++ F I + + +HP +
Sbjct: 470 EYGNSHQVNEIIERRLKAFVGINHLTNICNHPGI 503
Score = 82.4 bits (202), Expect = 2e-15
Identities = 51/164 (31%), Positives = 94/164 (57%), Gaps = 6/164 (3%)
Query: 623 GKWRSSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMT 682
G + S K+E + +L++ T + I+F+Q +++ ++E+ L G + V L G+ +
Sbjct: 515 GSIKDSGKVE-MTFKLFDDWFKSPTNRVILFTQRRTVITMMEYFLAEKGIKCVSLTGADS 573
Query: 683 PTQRDQTIKYFMENIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHR 742
R + IK F +++ +VFL++ +AGG+ LNL A++V I DP WNP + Q+ +R++R
Sbjct: 574 AAARPKIIKKFEDDVSIKVFLMTTRAGGLGLNLTCANKVIIFDPDWNPQADNQAKNRIYR 633
Query: 743 IGQFRPVKITRFCIEDSIES----RIIELQEKKASMIH-ATINQ 781
+GQ V I R +IE + ++ + A ++H A I+Q
Sbjct: 634 MGQTNDVAIYRLVSNGTIEDLKFFKQVQKENLAARLLHNAEIDQ 677
>CE03657 [R] KOG0383 Predicted helicase
Length = 1787
Score = 87.8 bits (216), Expect = 6e-17
Identities = 49/130 (37%), Positives = 72/130 (54%), Gaps = 1/130 (0%)
Query: 651 IVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQTI-KYFMENIHCEVFLVSLKAG 709
++FSQ T MLD++E G++ ++ GS+T QR I +Y VFL+S +AG
Sbjct: 960 LIFSQMTMMLDILEDFCDVEGYKYERIDGSITGQQRQDAIDRYNAPGAKQFVFLLSTRAG 1019
Query: 710 GVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRIIELQE 769
G+ +NL A V I D WNP + Q+ R HR+GQ V I RF + S+E RI + +
Sbjct: 1020 GLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKGSVEERITSVAK 1079
Query: 770 KKASMIHATI 779
KK + H +
Sbjct: 1080 KKMLLTHLVV 1089
Score = 86.3 bits (212), Expect = 2e-16
Identities = 66/232 (28%), Positives = 114/232 (48%), Gaps = 20/232 (8%)
Query: 165 ELIDVFKKLQESPIRQVERAPQPDGMAIRLLPFQLEGLHWLQQQEESDYNGGVLADEMGM 224
E ID+ KK + P + + G L P+QLEG++WL+ S+ +LADEMG+
Sbjct: 594 EKIDILKKYEVQP----DFISETGG---NLHPYQLEGINWLRHCW-SNGTDAILADEMGL 645
Query: 225 GKTIQTI----ALLMSDITRKPSLVVAPTVALMQWKNEIEQHTNKKLSVYMYHGANRTNN 280
GKT+Q++ L+ T+ P L+ AP ++ W+ E E V Y G +
Sbjct: 646 GKTVQSLTFLYTLMKEGHTKGPFLIAAPLSTIINWEREAELWC-PDFYVVTYVGDRESRM 704
Query: 281 L---GDFKDVDVILTTYAVLESVYRKQVYGFKRKAGTVK----EKSLLHSINFYRVILDE 333
+ +F VD + + + + F + + +K++L SI++ +++DE
Sbjct: 705 VIREHEFSFVDGAVRGGPKVSKIKTLENLKFHVLLTSYECINMDKAILSSIDWAALVVDE 764
Query: 334 AHNIKDRTSNTAKAVNSLQTKKRWCLSGTPLQNRIGEMYSLIRFLNIEPFTR 385
AH +K+ S K + + R L+GTPLQN + E++ L+ FL + F +
Sbjct: 765 AHRLKNNQSTFFKNLREYNIQYRVLLTGTPLQNNLEELFHLLNFLAPDRFNQ 816
>SPAC1783.05 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1373
Score = 87.4 bits (215), Expect = 8e-17
Identities = 61/217 (28%), Positives = 105/217 (48%), Gaps = 35/217 (16%)
Query: 177 PIRQVERAPQP-DGMAIRLLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLM 235
P R++E+ P G IR FQL G++W+ + NG +LADEMG+GKT+QT+ L
Sbjct: 374 PYRKLEKQPSYIKGGEIR--DFQLTGINWMAYLWHRNENG-ILADEMGLGKTVQTVCFLS 430
Query: 236 SDI----TRKPSLVVAPTVALMQWKNEIEQHTNKKLSVYMYHGANRTNNLGDFK------ 285
+ P L+V P + W+ + T S+ N+ +++
Sbjct: 431 YLVHSLKQHGPFLIVVPLSTVPAWQETLANWTPDLNSICYTGNTESRANIREYEFYLSTN 490
Query: 286 ----DVDVILTTYAVLESVYRKQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRT 341
+++LTTY + +K+K L++I + + +DEAH +K+
Sbjct: 491 SRKLKFNILLTTYEYI-----------------LKDKQELNNIRWQYLAIDEAHRLKNSE 533
Query: 342 SNTAKAVNSLQTKKRWCLSGTPLQNRIGEMYSLIRFL 378
S+ + ++ +T R ++GTPLQN + E+ SL+ FL
Sbjct: 534 SSLYETLSQFRTANRLLITGTPLQNNLKELASLVNFL 570
Score = 79.7 bits (195), Expect = 2e-14
Identities = 50/155 (32%), Positives = 84/155 (53%), Gaps = 3/155 (1%)
Query: 627 SSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQR 686
+S K+ L + L L+ D + ++FSQ ML+++ + G+ +L G++ + R
Sbjct: 702 NSGKMVLLDKLLQRLKHDGHRV--LIFSQMVRMLNILGEYMSLRGYNYQRLDGTIPASVR 759
Query: 687 DQTIKYFMENIHCE-VFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQ 745
+I +F + VFL+S +AGG+ +NL A V I D WNP + Q+ R HRIGQ
Sbjct: 760 RVSIDHFNAPDSPDFVFLLSTRAGGLGINLNTADTVIIFDSDWNPQADLQAMARAHRIGQ 819
Query: 746 FRPVKITRFCIEDSIESRIIELQEKKASMIHATIN 780
V + RF +D++E I+E +K + +A I+
Sbjct: 820 KNHVNVYRFLSKDTVEEDILERARRKMILEYAIIS 854
>Hs17454125 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 1849
Score = 87.0 bits (214), Expect = 1e-16
Identities = 50/151 (33%), Positives = 82/151 (54%), Gaps = 3/151 (1%)
Query: 651 IVFSQFTSMLDLVEWRLKRAGFQTV---KLQGSMTPTQRDQTIKYFMENIHCEVFLVSLK 707
++F Q SMLD+VE L + +V +L GS+ P QR + F + +V L++
Sbjct: 1648 LIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLTTH 1707
Query: 708 AGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRIIEL 767
GG+ LNL A V ++ WNP + Q+ DR HRIGQ R V + R ++E +I+ L
Sbjct: 1708 VGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGL 1767
Query: 768 QEKKASMIHATINQDEAAINRLTPADLQFLF 798
Q+ K ++ + I+Q+ +++ + L LF
Sbjct: 1768 QKFKMNIANTVISQENSSLQSMGTDQLLDLF 1798
Score = 78.2 bits (191), Expect = 5e-14
Identities = 61/218 (27%), Positives = 100/218 (44%), Gaps = 36/218 (16%)
Query: 179 RQVERAPQPDGMAIRLLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLMSDI 238
+++E P + L +Q +G++WL + +G +L D+MG+GKT+Q+I +L D
Sbjct: 1251 KKLENYKIPVPINAELRKYQQDGVNWLAFLNKYKLHG-ILCDDMGLGKTLQSICILAGDH 1309
Query: 239 TRK---------------PSLVVAPTVALMQWKNEIEQHTNKK-LSVYMYHG--ANRTNN 280
+ PSLVV P W +E+ + +++ L+ Y G R
Sbjct: 1310 CHRAQEYARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIRL 1369
Query: 281 LGDFKDVDVILTTYAVLESVYRKQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDR 340
K ++I+ +Y V+ + + +I F ILDE H IK+
Sbjct: 1370 QHQVKRHNLIVASYDVVRN-----------------DIDFFRNIKFNYCILDEGHVIKNG 1412
Query: 341 TSNTAKAVNSLQTKKRWCLSGTPLQNRIGEMYSLIRFL 378
+ +KAV L R LSGTP+QN + E++SL FL
Sbjct: 1413 KTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFL 1450
>7300091 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 1861
Score = 87.0 bits (214), Expect = 1e-16
Identities = 48/154 (31%), Positives = 84/154 (54%), Gaps = 3/154 (1%)
Query: 649 KSIVFSQFTSMLDLVEWRLKRAGFQTV---KLQGSMTPTQRDQTIKYFMENIHCEVFLVS 705
++++F Q +MLD+VE L R +V +L GS+ +QR + F + +V L++
Sbjct: 1653 RALIFCQLKAMLDIVEQDLLRRHLPSVTYLRLDGSVPASQRQDIVNNFNSDPSIDVLLLT 1712
Query: 706 LKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRII 765
GG+ LNL A V ++ WNP + Q+ DR HRIGQ + V + R +S+E +I+
Sbjct: 1713 TMVGGLGLNLTGADTVIFVEHDWNPMKDLQAMDRAHRIGQKKVVNVYRLITRNSLEEKIM 1772
Query: 766 ELQEKKASMIHATINQDEAAINRLTPADLQFLFN 799
LQ+ K + ++ + A++ + + + LFN
Sbjct: 1773 GLQKFKILTANTVVSAENASLQTMGTSQIFDLFN 1806
Score = 82.0 bits (201), Expect = 3e-15
Identities = 88/378 (23%), Positives = 157/378 (41%), Gaps = 86/378 (22%)
Query: 187 PDGMAIRLLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLMSD--------I 238
P +++ L +Q G++WL + + +G +L D+MG+GKT+QTI +L D +
Sbjct: 1281 PVPISVELRCYQQAGINWLWFLNKYNLHG-ILCDDMGLGKTLQTICILAGDHMHRQTANL 1339
Query: 239 TRKPSLVVAPTVALMQWKNEIEQHTNK--KLSVYMYHG--ANRTNNLGDF-KDVDVILTT 293
PSLV+ P W E+E+ ++ L Y+G R D ++++ +
Sbjct: 1340 ANLPSLVICPPTLTGHWVYEVEKFLDQGSVLRPLHYYGFPVGREKLRSDIGTKCNLVVAS 1399
Query: 294 YAVLESVYRKQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQT 353
Y + K+ I+F +LDE H IK+ + ++KA+ L+
Sbjct: 1400 YDTVR-----------------KDIDFFSGIHFNYCVLDEGHIIKNGKTKSSKAIKRLKA 1442
Query: 354 KKRWCLSGTPLQNRIGEMYSLIRFL------NIEPFTRYYCKQCSCSSENWRFSDYLHCD 407
R LSGTP+QN + E++SL FL + F + + + S +
Sbjct: 1443 NHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFVQRFSRPILSSRD----------- 1491
Query: 408 DCGHVGMQHTNFFNHFMLKNVQKHGIEGPGLQSFQNIQTLLARIMLRRTKVERADDLGLP 467
K+ K + G+ + + + + +LRR K + D LP
Sbjct: 1492 -----------------AKSSAKE--QEAGVLAMEALHRQVLPFLLRRVKEDVLKD--LP 1530
Query: 468 PRI------------VTVRKDYFNEEEKDLYQSLYSDIKRKYNSYVEEGVVLNNYANIFT 515
P+I + + +D+ N+ KD L S V E L+ +IF
Sbjct: 1531 PKITQDLLCELSPLQLRLYEDFSNKHLKDCLDKLGDSSSA---SMVTEN--LSAKTHIFQ 1585
Query: 516 LITRMRQMADHPDLVLKR 533
+ ++ + +HP LVL++
Sbjct: 1586 ALRYLQNVCNHPKLVLRQ 1603
>YLR247c [L] KOG0298 DEAD box-containing helicase-like transcription
factor/DNA repair protein
Length = 1556
Score = 85.9 bits (211), Expect = 2e-16
Identities = 61/202 (30%), Positives = 99/202 (48%), Gaps = 38/202 (18%)
Query: 216 GVLADEMGMGKTIQTIALLMSD------------------ITR-KPSLVVAPTVALMQWK 256
GVLA+EMG+GKTI+ ++L++ + IT+ K +L++ P L QW
Sbjct: 387 GVLAEEMGLGKTIEILSLILLNRRKLKDSEATFIDDENRTITKTKTTLIICPNAILKQWL 446
Query: 257 NEIEQHTNKKLSVYMYHGANRTNNLGDFKDVD----------VILTTYAVL-----ESVY 301
EIE H N L Y Y G N + D K VD +I+T+Y ++ + +
Sbjct: 447 EEIELHANS-LKWYTYRGYNEI--MKDCKTVDEAVQQLCQYDIIVTSYNIIATEVHHAEF 503
Query: 302 RKQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSG 361
+ + + K+ S L + FYR+ILDE ++ ++ +AK + L W +SG
Sbjct: 504 NRSIRSRRLKSPKYDYSSPLALMQFYRIILDEVQMLRSSSTYSAKCTSLLHRIHTWGVSG 563
Query: 362 TPLQNRIGEMYSLIRFLNIEPF 383
TP+QN I ++ +L + PF
Sbjct: 564 TPIQN-IYNFRMIMSYLKLHPF 584
>At2g25170 [R] KOG0383 Predicted helicase
Length = 1359
Score = 85.9 bits (211), Expect = 2e-16
Identities = 88/361 (24%), Positives = 154/361 (42%), Gaps = 90/361 (24%)
Query: 194 LLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLMSDITRK--PSLVVAPTVA 251
L P+QLEGL++L+ S +LADEMG+GKTIQ+IALL S P LV+AP
Sbjct: 273 LHPYQLEGLNFLRFSW-SKQTHVILADEMGLGKTIQSIALLASLFEENLIPHLVIAPLST 331
Query: 252 LMQWKNEIEQHTNKKLSVYMYHGANRTNNLGDFKDVDVILTTYAVLESVYRKQVYGFKRK 311
L W+ E +++V MY G + ++ + S +K++ K+K
Sbjct: 332 LRNWEREFATWA-PQMNVVMYFGTAQAR---------AVIREHEFYLSKDQKKIK--KKK 379
Query: 312 AGTVKEKS----------------------LLHSINFYRVILDEAHNIKDRTSNTAKAVN 349
+G + +S +L I + +I+DE H +K++ S ++
Sbjct: 380 SGQISSESKQKRIKFDVLLTSYEMINLDSAVLKPIKWECMIVDEGHRLKNKDSKLFSSLT 439
Query: 350 SLQTKKRWCLSGTPLQNRIGEMYSLIRFLNIEPFTRYYCKQCSCSSENWRFSDYLHCDDC 409
+ R L+GTPLQN + E++ L+ FL D
Sbjct: 440 QYSSNHRILLTGTPLQNNLDELFMLMHFL-----------------------------DA 470
Query: 410 GHVGMQHTNFFNHFMLKNVQKHGIEGPGLQSFQNIQTLLARIMLRRTKVERADDLGLPPR 469
G G L+ Q+ + + + +LA +LRR K + D +PP+
Sbjct: 471 GKFG----------SLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKD--MPPK 518
Query: 470 IVTVRKDYFNEEEKDLYQSLYSDIKRKYNSYVEEG---VVLNNYANIFTLITRMRQMADH 526
+ + + +K+ Y+++++ R Y ++G + LNN ++ +R++ H
Sbjct: 519 KELILRVDLSSLQKEYYKAIFT---RNYQVLTKKGGAQISLNN------IMMELRKVCCH 569
Query: 527 P 527
P
Sbjct: 570 P 570
Score = 78.6 bits (192), Expect = 4e-14
Identities = 48/156 (30%), Positives = 81/156 (51%), Gaps = 3/156 (1%)
Query: 627 SSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQR 686
S K++ L + + L+ + ++++QF MLDL+E +Q ++ G + +R
Sbjct: 593 SCGKLQLLDKMMVKLKEQGHRV--LIYTQFQHMLDLLEDYCTHKKWQYERIDGKVGGAER 650
Query: 687 DQTIKYF-MENIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQ 745
I F +N + FL+S +AGG+ +NL A V I D WNP + Q+ R HR+GQ
Sbjct: 651 QIRIDRFNAKNSNKFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQ 710
Query: 746 FRPVKITRFCIEDSIESRIIELQEKKASMIHATINQ 781
V I R +IE R+++L +KK + H + +
Sbjct: 711 TNKVMIYRLINRGTIEERMMQLTKKKMVLEHLVVGK 746
>At2g40770 [L] KOG0298 DEAD box-containing helicase-like transcription
factor/DNA repair protein
Length = 1648
Score = 85.5 bits (210), Expect = 3e-16
Identities = 70/279 (25%), Positives = 123/279 (43%), Gaps = 36/279 (12%)
Query: 547 CQLCDDEAE-EPIESKCHHRFCRLCINEYIDSFMADE---KKLTCPVC-------HIGLS 595
C +C + + + +C H C C + E K + CP+C +I +
Sbjct: 1328 CPICHEILRNQKMVFQCGHSTCCNCFFAMTERKSVQETLQKWVMCPICRQHTDVRNIAYA 1387
Query: 596 IDLQQQALEVDEELFKKQSIVSRLKMGGKWRSSTKIEALVEELYNLRSDKRTIKSIVFSQ 655
D + + + + S+V + G TKIEA+ + ++S K +VFS
Sbjct: 1388 DDRRNSSSSDQDHKDSEASLVVQGSYG------TKIEAVTRRILWIKSSDPQTKVLVFSS 1441
Query: 656 FTSMLDLVEWRLKRAGFQTVKLQGSM-----------TPTQRDQTIKYFMENIHCEVFLV 704
+ +LD++E ++++G + + +T + E +V L+
Sbjct: 1442 WNDVLDVLEHAFAANSITCIRMKGGRKSQTAISKFKGSEKETQKTNSHQKEEKSIQVLLL 1501
Query: 705 SLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRI 764
++ G LNL EA V +++P NP+ E Q+ RVHRIGQ +P + RF + ++E I
Sbjct: 1502 LVQHGANGLNLLEAQHVILVEPLLNPAAEAQAVGRVHRIGQEKPTLVHRFLVSGTVEESI 1561
Query: 765 IELQEKKASMIHA-----TINQDEAAINRLTPADLQFLF 798
+L K + + + T NQD+ LT DL+ LF
Sbjct: 1562 YKLNRNKNTNLSSFSSRNTKNQDQ---QFLTLKDLESLF 1597
Score = 79.0 bits (193), Expect = 3e-14
Identities = 70/334 (20%), Positives = 135/334 (39%), Gaps = 71/334 (21%)
Query: 229 QTIALLMSDITRKPSLVVAPTVALMQWKNEIEQHTNK-KLSVYMYHGANRTN-------N 280
+ + + S I+ +L+V P L QW +EI +HT L +Y G + +
Sbjct: 472 ELLQVTASPISTGATLIVCPAPILPQWHSEITRHTRLGSLITCIYEGVRNASLSEEPMID 531
Query: 281 LGDFKDVDVILTTYAVLESVYR---------KQVYGFKRKAGTVKEKSLLHSINFYRVIL 331
+ + + D++LTTY VL+ + F+++ + L I ++R+ L
Sbjct: 532 ITELLNADIVLTTYDVLKEDLTHDFDRHDGDRHCLRFQKRYPVIPTP--LTRIFWWRICL 589
Query: 332 DEAHNIKDRTSNTAKAVNSLQTKKRWCLSGTPLQNRIGEMYSLIRFLNIEPFTRYYCKQC 391
DEA ++ + + L TK RWC++GTP+Q ++ +++ L++FL PF
Sbjct: 590 DEAQMVESNAAAATEMALRLYTKHRWCITGTPIQRKLDDLFGLLKFLKANPF-------- 641
Query: 392 SCSSENWRFSDYLHCDDCGHVGMQHTNFFNHFMLKNVQKHGIEGPGLQSFQNIQTLLARI 451
W V + E ++ + ++
Sbjct: 642 --DVSRWWI--------------------------EVIRDPYERRDTKAMEFTHKFFKQV 673
Query: 452 MLRRTKVERADDLGLPP--------RIVTVRKDYFNEEE-------KDLYQSLYSDI-KR 495
M R +KV AD+L LPP + + + +++ + +++ ++L DI KR
Sbjct: 674 MWRSSKVHVADELQLPPQEECVSWLKFSAIEEHFYSRQHDTCVSYAREVIETLKRDILKR 733
Query: 496 KYNSYVEEGVVLNNYANIFTLITRMRQMADHPDL 529
+ S V A + + ++RQ HP +
Sbjct: 734 GHTSSDNPLVTHAEAAKLLNSLLKLRQACCHPQV 767
>SPAC15A10.03c [L] KOG0390 DNA repair protein SNF2 family
Length = 852
Score = 85.1 bits (209), Expect = 4e-16
Identities = 52/172 (30%), Positives = 91/172 (52%), Gaps = 2/172 (1%)
Query: 628 STKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRD 687
S K+ L LY ++ + K ++ S +TS LDL E + G++ ++L G+M +R
Sbjct: 609 SGKMLVLERMLYQIKQETDD-KIVLISNYTSTLDLFEQLCRARGYKALRLDGTMNVNKRQ 667
Query: 688 QTIKYFME-NIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQF 746
+ + F + VFL+S KAGG +NL A+++ + DP WNP+ + Q+ RV R GQ
Sbjct: 668 RLVDTFNDPEKDAFVFLLSSKAGGCGINLIGANRLILFDPDWNPAADQQALARVWRDGQK 727
Query: 747 RPVKITRFCIEDSIESRIIELQEKKASMIHATINQDEAAINRLTPADLQFLF 798
+ + RF +IE +I + Q K S+ +++ + + +L+ LF
Sbjct: 728 KDCFVYRFIATGTIEEKIFQRQSHKQSLSSCVVDEAQDVERHFSLDNLRQLF 779
Score = 79.0 bits (193), Expect = 3e-14
Identities = 65/242 (26%), Positives = 113/242 (45%), Gaps = 26/242 (10%)
Query: 155 NTAKLYAHHSELIDVFKKLQESPIRQVERAPQPDGMAIRLLPFQLEGLHWLQQ----QEE 210
NT+K + L D+ +E P +A L P Q+EG+ +L + + +
Sbjct: 225 NTSKHRRPNKSLKDLLGIQKEKPPPPPVAVVIDPKLARILRPHQIEGVKFLYKCVTGRID 284
Query: 211 SDYNGGVLADEMGMGKTIQTIALLMSDITRKP---------SLVVAPTVALMQWKNEIEQ 261
NG ++ADEMG+GKT+Q IALL + + + P +++ P+ + W NE+ +
Sbjct: 285 RCANGCIMADEMGLGKTLQCIALLWTLLKQSPQAGKPTIEKAIITCPSSLVKNWANELVK 344
Query: 262 HTNKK-LSVYMYHGANRTNNLGDFKDVDVILTTYAVLESVYRKQVYGFKRKAGTVKEKSL 320
K ++ ++ G + L + SV+ +QV A +S
Sbjct: 345 WLGKDAITPFILDGKSSKQEL---------IMALQQWASVHGRQVTRPVLIASYETLRSY 395
Query: 321 LHSINFYRV---ILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGTPLQNRIGEMYSLIRF 377
+ +N + + DE H +K+ S T A++ L ++R LSGTP+QN + E +SL+ F
Sbjct: 396 VEHLNNAEIGMLLCDEGHRLKNSDSLTFTALDKLNVQRRVILSGTPIQNDLSEYFSLLNF 455
Query: 378 LN 379
N
Sbjct: 456 AN 457
>7295870 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1883
Score = 84.7 bits (208), Expect = 5e-16
Identities = 62/209 (29%), Positives = 102/209 (48%), Gaps = 15/209 (7%)
Query: 180 QVERAPQPDGMAIRLLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLMSDIT 239
+++ P+ + L +Q++GL+WL + N +LADEMG+GKTIQTI L S
Sbjct: 514 RIKNQPEFLSSGLTLRDYQMDGLNWLLHSWCKE-NSVILADEMGLGKTIQTICFLYSLFK 572
Query: 240 RK----PSLVVAPTVALMQWKNEIEQHTNKKLSVYMYHGANRTNNLGDFKDVDVILTTYA 295
P L V P + W+ E + ++V Y LGD K ++I
Sbjct: 573 IHHLYGPFLCVVPLSTMTAWQREFDLWA-PDMNVVTY--------LGDIKSRELIQQYEW 623
Query: 296 VLESVYRKQVYGFKRKAGTV-KEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTK 354
ES R + V K+K L ++ + +++DEAH +K+ S K++ T
Sbjct: 624 QFESSKRLKFNCILTTYEIVLKDKQFLGTLQWAALLVDEAHRLKNDDSLLYKSLKEFDTN 683
Query: 355 KRWCLSGTPLQNRIGEMYSLIRFLNIEPF 383
R ++GTPLQN + E+++L+ F+ + F
Sbjct: 684 HRLLITGTPLQNSLKELWALLHFIMPDKF 712
Score = 81.3 bits (199), Expect = 6e-15
Identities = 52/157 (33%), Positives = 80/157 (50%), Gaps = 3/157 (1%)
Query: 626 RSSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQ 685
+ S K+ L + L L+ + ++FSQ MLD++ L++ F +L GS+
Sbjct: 833 KGSGKLVLLDKLLCRLKETGHRV--LIFSQMVRMLDVLADYLQKRHFPFQRLDGSIKGEM 890
Query: 686 RDQTIKYF-MENIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIG 744
R Q + +F E FL+S +AGG+ +NL A V I D WNP + Q+ R HRIG
Sbjct: 891 RRQALDHFNAEGSQDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIG 950
Query: 745 QFRPVKITRFCIEDSIESRIIELQEKKASMIHATINQ 781
Q V I R S+E +I+E ++K + H I +
Sbjct: 951 QKNQVNIYRLVTARSVEEQIVERAKQKMVLDHLVIQR 987
>At3g19210 [L] KOG0390 DNA repair protein SNF2 family
Length = 688
Score = 84.3 bits (207), Expect = 7e-16
Identities = 89/381 (23%), Positives = 153/381 (39%), Gaps = 81/381 (21%)
Query: 194 LLPFQLEGLHWLQQ-----QEESDYNGGVLADEMGMGKTIQTIALLMSDITR-------- 240
L P Q EG+ ++ ++ NG +LAD+MG+GKT+Q+I LL + + +
Sbjct: 76 LRPHQREGVQFMFDCVSGLHGSANINGCILADDMGLGKTLQSITLLYTLLCQGFDGTPMV 135
Query: 241 KPSLVVAPTVALMQWKNEIEQHTNKKLSVYMYHGANRTNNLGDFKDVDVILTTYAVLESV 300
K +++V PT + W+ EI++ ++ + + R + L + VL
Sbjct: 136 KKAIIVTPTSLVSNWEAEIKKWVGDRIQLIALCESTRDDVLSGIDSFTRPRSALQVLIIS 195
Query: 301 YRKQVYGFKRKAGTVKEKSLLHSINFYR------VILDEAHNIKDRTSNTAKAVNSLQTK 354
Y E +HS F + +I DEAH +K+ + T +A+ SL K
Sbjct: 196 Y---------------ETFRMHSSKFCQSESCDLLICDEAHRLKNDQTLTNRALASLTCK 240
Query: 355 KRWCLSGTPLQNRIGEMYSLIRFLN------IEPFTRYYCKQCSCSSENWRFSDYLHCDD 408
+R LSGTP+QN + E ++++ F N F YY C E +
Sbjct: 241 RRVLLSGTPMQNDLEEFFAMVNFTNPGSLGDAAHFRHYYEAPIICGREPTATEEE----- 295
Query: 409 CGHVGMQHTNFFNHFMLKNVQKHGIEGPGLQSFQNIQTLLARIMLRRTKVERADDLGLPP 468
KN+ + + + + +LRRT ++ LPP
Sbjct: 296 -----------------KNL--------AADRSAELSSKVNQFILRRTNALLSNH--LPP 328
Query: 469 RIVTVRKDYFNEEEKDLYQSLYS--DIKRKYNSYVEEGVVLNNYANIFTLITRMRQMADH 526
+I+ V + LY S ++KR ++ VL IT ++++ +H
Sbjct: 329 KIIEVVCCKMTTLQSTLYNHFISSKNLKRALADNAKQTKVL-------AYITALKKLCNH 381
Query: 527 PDLVLKRLKGNNDNNPGVIIC 547
P L+ +K N G C
Sbjct: 382 PKLIYDTIKSGNPGTVGFENC 402
Score = 73.9 bits (180), Expect = 9e-13
Identities = 50/154 (32%), Positives = 79/154 (50%), Gaps = 3/154 (1%)
Query: 623 GKW-RSSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSM 681
G W S K+ L L NLR K + ++ S +T LDL + + ++L GS
Sbjct: 423 GAWVELSGKMHVLSRLLANLRR-KTDDRIVLVSNYTQTLDLFAQLCRERRYPFLRLDGST 481
Query: 682 TPTQRDQTIKYFMENIHCE-VFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRV 740
T ++R + + + E FL+S KAGG LNL A+++ + DP WNP+ + Q+ RV
Sbjct: 482 TISKRQKLVNRLNDPTKDEFAFLLSSKAGGCGLNLIGANRLVLFDPDWNPANDKQAAARV 541
Query: 741 HRIGQFRPVKITRFCIEDSIESRIIELQEKKASM 774
R GQ + V + RF +IE ++ + Q K +
Sbjct: 542 WRDGQKKRVYVYRFLSTGTIEEKVYQRQMSKEGL 575
>YGL163c [L] KOG0390 DNA repair protein SNF2 family
Length = 898
Score = 83.6 bits (205), Expect = 1e-15
Identities = 52/172 (30%), Positives = 91/172 (52%), Gaps = 2/172 (1%)
Query: 628 STKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRD 687
S K L L+ ++++ K ++ S +T LDL+E + + V+L G+M+ +R
Sbjct: 654 SAKFSILERFLHKIKTESDD-KIVLISNYTQTLDLIEKMCRYKHYSAVRLDGTMSINKRQ 712
Query: 688 QTIKYFMENIHCE-VFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQF 746
+ + F + E +FL+S KAGG +NL A+++ ++DP WNP+ + Q+ RV R GQ
Sbjct: 713 KLVDRFNDPEGQEFIFLLSSKAGGCGINLIGANRLILMDPDWNPAADQQALARVWRDGQK 772
Query: 747 RPVKITRFCIEDSIESRIIELQEKKASMIHATINQDEAAINRLTPADLQFLF 798
+ I RF +IE +I + Q K S+ ++ E + +L+ LF
Sbjct: 773 KDCFIYRFISTGTIEEKIFQRQSMKMSLSSCVVDAKEDVERLFSSDNLRQLF 824
Score = 66.6 bits (161), Expect = 1e-10
Identities = 47/184 (25%), Positives = 87/184 (46%), Gaps = 14/184 (7%)
Query: 207 QQEESDYNGGVLADEMGMGKTIQTIALLMSDITRKPS--------LVVAPTVALMQWKNE 258
+Q G ++ADEMG+GKT+Q IAL+ + + + P ++V P+ + W NE
Sbjct: 322 EQNNRGAYGCIMADEMGLGKTLQCIALMWTLLRQGPQGKRLIDKCIIVCPSSLVNNWANE 381
Query: 259 IEQHTNKKLSVYMYHGANRTNNLGDFKDVDVILTTYAVLES---VYRKQVYGFKRKAGTV 315
+ + + +++ G V + +A + V + ++ V
Sbjct: 382 LIKWLGPNTLTPLAVDGKKSSMGGGNTTVSQAIHAWAQAQGRNIVKPVLIISYETLRRNV 441
Query: 316 KEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGTPLQNRIGEMYSLI 375
+ L + N ++ DE H +K+ S T A++S+ +R LSGTP+QN + E ++L+
Sbjct: 442 DQ---LKNCNVGLMLADEGHRLKNGDSLTFTALDSISCPRRVILSGTPIQNDLSEYFALL 498
Query: 376 RFLN 379
F N
Sbjct: 499 SFSN 502
>Hs21071046 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 1033
Score = 83.2 bits (204), Expect = 1e-15
Identities = 47/144 (32%), Positives = 77/144 (52%), Gaps = 13/144 (9%)
Query: 651 IVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRD------------QTIKYF-MENI 697
++FSQ T +LD++E G++ +L G +R+ + I+ F N
Sbjct: 485 LIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVEFLGQREAIEAFNAPNS 544
Query: 698 HCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIE 757
+F++S +AGG+ +NL A V + D WNP V+ Q+ DR HRIGQ +PV++ R +
Sbjct: 545 SKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITD 604
Query: 758 DSIESRIIELQEKKASMIHATINQ 781
+++E RI+E E K + I Q
Sbjct: 605 NTVEERIVERAEIKLRLDSIVIQQ 628
Score = 68.2 bits (165), Expect = 5e-11
Identities = 52/191 (27%), Positives = 88/191 (45%), Gaps = 43/191 (22%)
Query: 194 LLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLMSDITRKPSLVVAPTVALM 253
L +Q+ GL+WL E+ NG +LADE+ P +V+ P L
Sbjct: 183 LRDYQIRGLNWLISLYENGVNG-ILADEIP-----------------GPHMVLVPKSTLH 224
Query: 254 QWKNEIEQHTNKKLSVYMYHGANRTNNLGDFKDV------DVILTTYAVLESVYRKQVYG 307
W NE ++ L V + G ++ +D DV +T+Y ++
Sbjct: 225 NWMNEFKRWV-PSLRVICFVG-DKDARAAFIRDEMMPGEWDVCVTSYEMV---------- 272
Query: 308 FKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGTPLQNR 367
+KEKS+ ++ +++DEAH IK+ S ++ V ++ R L+GTPLQN
Sbjct: 273 -------IKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNN 325
Query: 368 IGEMYSLIRFL 378
+ E+++L+ FL
Sbjct: 326 LHELWALLNFL 336
>7300511 [L] KOG0388 SNF2 family DNA-dependent ATPase
Length = 1477
Score = 83.2 bits (204), Expect = 1e-15
Identities = 83/367 (22%), Positives = 155/367 (41%), Gaps = 65/367 (17%)
Query: 173 LQESPIRQVERAPQPDGMAIRLLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIA 232
++ P +++ PQP L +Q++G+ WL + +G +LADEMG+GKT+Q+IA
Sbjct: 514 IKPEPRPEMKDLPQPKMFKGTLKGYQIKGMTWLANIYDQGISG-ILADEMGLGKTVQSIA 572
Query: 233 LLMSDITRKPSLVVAPTVALMQWKNEIEQHTNKKLSVYMYHGANRTNNLGDFKDVDVILT 292
L I + V + W + E+ K L + T + V++T
Sbjct: 573 FLCH-IAEHYGVFVPDFKVVPYWGSPAER---KILRQFWDQKHLHTRDAS----FHVVIT 624
Query: 293 TYAVLESVYRKQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQ 352
+Y ++ S Y+ + I + ++LDEA IK S K +
Sbjct: 625 SYQLVVSDYK-----------------YFNRIKWQYMVLDEAQAIKSAASQRWKLLLGFS 667
Query: 353 TKKRWCLSGTPLQNRIGEMYSLIRFLNIEPFTRYYCKQCSCSSENWRFSDYLHCDDCGHV 412
+ R LSGTP+QN + E+++L+ F+ F +
Sbjct: 668 CRNRLLLSGTPIQNSMAELWALLHFIMPTLFDSH-------------------------- 701
Query: 413 GMQHTNFFNHFMLKNVQKHGIEGPGLQSFQ--NIQTLLARIMLRRTKVERADDLGLPPRI 470
+ FN + K+++ H G+ Q + +L MLRR K + ++L +I
Sbjct: 702 -----DEFNEWFSKDIESHAENKTGIDEKQISRLHMILKPFMLRRIKKDVENELS--DKI 754
Query: 471 VTVRKDYFNEEEKDLYQSLYSDIKRKYNSYVEEGVVL----NNYANIFTLITRMRQMADH 526
+ +K LY++L I+ + ++ G ++ +N+ L+ + R++ +H
Sbjct: 755 EIMVYCPLTIRQKLLYRALKQKIRIEDLLHLTSGSTTTSSSSSASNLMNLVMQFRKVCNH 814
Query: 527 PDLVLKR 533
P+L +R
Sbjct: 815 PELFERR 821
>SPAC3G6.01 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 1388
Score = 82.8 bits (203), Expect = 2e-15
Identities = 56/198 (28%), Positives = 99/198 (49%), Gaps = 31/198 (15%)
Query: 194 LLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALL--MSDITRK--PSLVVAPT 249
L FQL G++W+ + NG +LADEMG+GKT+QT+A L ++ R+ P LVV P
Sbjct: 375 LRDFQLTGVNWMAYLWHKNENG-ILADEMGLGKTVQTVAFLSYLAHSLRQHGPFLVVVPL 433
Query: 250 VALMQWKNEIEQHTNKKLSVYMYHGANRTNNLGDFK---------DVDVILTTYAVLESV 300
+ W+ + + + + D++ +++LTTY +
Sbjct: 434 STVPAWQETLALWASDMNCISYLGNTTSRQVIRDYEFYVDGTQKIKFNLLLTTYEYV--- 490
Query: 301 YRKQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLS 360
+K++S+L +I + + +DEAH +K+ S+ +A++ + R ++
Sbjct: 491 --------------LKDRSVLSNIKWQYMAIDEAHRLKNSESSLYEALSQFKNSNRLLIT 536
Query: 361 GTPLQNRIGEMYSLIRFL 378
GTPLQN I E+ +L+ FL
Sbjct: 537 GTPLQNNIRELAALVDFL 554
Score = 82.0 bits (201), Expect = 3e-15
Identities = 53/155 (34%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 627 SSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQR 686
+S K+ L + L LR D + ++FSQ MLD++ L G+ +L G++ R
Sbjct: 688 NSGKMVLLDKLLSRLRRDGHRV--LIFSQMVRMLDILGDYLSLRGYPHQRLDGTVPAAVR 745
Query: 687 DQTIKYF-MENIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQ 745
+I +F N VFL+S +AGG+ +NL A V I D WNP + Q+ R HRIGQ
Sbjct: 746 RTSIDHFNAPNSPDFVFLLSTRAGGLGINLMTADTVIIFDSDWNPQADLQAMARAHRIGQ 805
Query: 746 FRPVKITRFCIEDSIESRIIELQEKKASMIHATIN 780
V + R +D+IE ++E +K + +A I+
Sbjct: 806 KNHVMVYRLLSKDTIEEDVLERARRKMILEYAIIS 840
>SPAC22F3.03c [L] KOG0390 DNA repair protein SNF2 family
Length = 768
Score = 82.8 bits (203), Expect = 2e-15
Identities = 54/173 (31%), Positives = 86/173 (49%), Gaps = 27/173 (15%)
Query: 217 VLADEMGMGKTIQTIALLMSDI----------TRKPSLVVAPTVALMQWKNEIEQHT-NK 265
+LADEMG+GKT+QTI ++ + + T ++VVAP L W+NE ++
Sbjct: 189 ILADEMGLGKTLQTITVVWTLLKQSYYANRSSTINNAMVVAPVTLLKNWENEFYNWLGHE 248
Query: 266 KLSVYMYHGANRTNNLGDFKDVDVILTTYAVLESVYRKQVYGFKRKAGTVKEKSLLHSIN 325
++ VY+ A K +I+T Y + + R G I+
Sbjct: 249 RIHVYIARCAEDFQEFTSNKTYSIIITGYETVCTYLRNYGCG----------------ID 292
Query: 326 FYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGTPLQNRIGEMYSLIRFL 378
+I DEAH +K +S T +N L+T+KR L+GTPLQN + E +S++ F+
Sbjct: 293 IDLLICDEAHRLKSMSSQTWITLNKLKTRKRLLLTGTPLQNDLSEYFSMVNFI 345
Score = 79.0 bits (193), Expect = 3e-14
Identities = 56/176 (31%), Positives = 93/176 (52%), Gaps = 5/176 (2%)
Query: 627 SSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQR 686
SS+K++ L L + + + K+++ SQ+ L+L+E L + KL GS ++R
Sbjct: 487 SSSKLQILAALLKSFQRGCQ--KAVIVSQYKETLELIELFLSILHVRFCKLLGSTPFSER 544
Query: 687 DQTIKYFMENIHCE--VFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIG 744
D + F + E V L+S KAGG LNL ++++ I +P WNP+ + Q+ R++R G
Sbjct: 545 DLIVHNFNTSSFKEFSVLLLSSKAGGCGLNLTGSTRLIIYEPSWNPAQDLQALSRIYRSG 604
Query: 745 QFRPVKITRFCIEDSIESRIIELQEKKASMIHATINQDEA-AINRLTPADLQFLFN 799
Q RPV I F ++ RI Q K + + I+ D + N T D++ LF+
Sbjct: 605 QKRPVCIYTFLSSGMLDERIFIRQNTKQGLSSSFIDSDASQKKNFFTGEDIKTLFS 660
>Hs4557565 [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26
(contains SNF2 family DNA-dependent ATPase domain)
Length = 1493
Score = 82.8 bits (203), Expect = 2e-15
Identities = 50/146 (34%), Positives = 81/146 (55%), Gaps = 2/146 (1%)
Query: 623 GKWRSSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMT 682
G W+ S K+ +VE L + K+ + ++FSQ MLD++E L+ + +K+ G+ T
Sbjct: 833 GYWKRSGKM-IVVESLLKIWH-KQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTTT 890
Query: 683 PTQRDQTIKYFMENIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHR 742
R I + E+ VFL++ + GG+ +NL A++V I DP WNPS + Q+ +R R
Sbjct: 891 IASRQPLITRYNEDTSIFVFLLTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWR 950
Query: 743 IGQFRPVKITRFCIEDSIESRIIELQ 768
IGQ + V + R +IE +I Q
Sbjct: 951 IGQKKQVTVYRLLTAGTIEEKIYHRQ 976
>Hs13376715 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 336
Score = 82.4 bits (202), Expect = 2e-15
Identities = 73/314 (23%), Positives = 134/314 (42%), Gaps = 55/314 (17%)
Query: 222 MGMGKTIQTIALLMSDIT---RKPSLVVAPTVALMQWKNEIEQHTNKKLSVYMYHGANRT 278
MG+GKTIQ+I L + R P L++AP + W+ E T+ ++V +YHG+ +
Sbjct: 1 MGLGKTIQSITFLYEILLTGIRGPFLIIAPLSTIANWEREFRTWTD--INVVVYHGSLIS 58
Query: 279 NNLGDFKDVDVILTTYAVLESVYRKQ--VYGFKRKAGTVKEKSLLHSINFYRVILDEAHN 336
+ ++ + ++ YR Q + F+ G E L++I + VI+DEAH
Sbjct: 59 RQMIQQYEMYFRDSQGRIIRGAYRFQAIITTFEMILGGCGE---LNAIEWRCVIIDEAHR 115
Query: 337 IKDRTSNTAKAVNSLQTKKRWCLSGTPLQNRIGEMYSLIRFLNIEPFTRYYCKQCSCSSE 396
+K++ + + + + + L+GTPLQN + E++SL+ FL E
Sbjct: 116 LKNKNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELFSLLHFL-----------------E 158
Query: 397 NWRFSDYLHCDDCGHVGMQHTNFFNHFMLKNVQKHGIEGPGLQSFQNIQTLLARIMLRRT 456
RF + F F + + Q +Q +L +MLRR
Sbjct: 159 PLRFP-------------SESTFMQEFGDLETE---------EQVQKLQAILKPMMLRRL 196
Query: 457 KVERADDLGLPPRIVTVRKDYFNEEEKDLYQSLYSDIKRKYNSYVEEGVVLNNYANIFTL 516
K + + ++ + E ++ + Y I K S++ +G N N+
Sbjct: 197 KED------VEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGAGQTNVPNLVNT 250
Query: 517 ITRMRQMADHPDLV 530
+ +R+ +HP L+
Sbjct: 251 MMELRKCCNHPYLI 264
>ECU03g1530 [K] KOG0392 SNF2 family DNA-dependent ATPase domain-containing
protein
Length = 1256
Score = 82.0 bits (201), Expect = 3e-15
Identities = 54/177 (30%), Positives = 94/177 (52%), Gaps = 6/177 (3%)
Query: 623 GKWRSSTKIEALVEELYNLRS----DKRTIKSIVFSQFTSMLDLV-EWRLKRAGFQTVKL 677
G ++ ST++ V+ L ++ S + K ++F QF S +DLV + +K+ F+ +L
Sbjct: 1073 GHFKDSTEVSCKVKALEDIISLCGGEDLGSKILIFFQFKSTIDLVIKDIMKKYKFKYSRL 1132
Query: 678 QGSMTPTQRDQTIKYFMENIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSG 737
GS+ R + + F +FL + + GG+ LNL A V + + WNP + Q+
Sbjct: 1133 DGSVPSAARTKIAEEFNTGTTQMLFLTT-QVGGLGLNLTGADTVVMYEHDWNPFNDLQAM 1191
Query: 738 DRVHRIGQFRPVKITRFCIEDSIESRIIELQEKKASMIHATINQDEAAINRLTPADL 794
DR HRIGQ R V + RF +++E +++ LQ K + ++ ++Q A I + DL
Sbjct: 1192 DRAHRIGQKRTVNVFRFIARNTLEEKVMNLQSFKMFVANSLVSQQNADIETMDTKDL 1248
Score = 76.6 bits (187), Expect = 1e-13
Identities = 51/191 (26%), Positives = 98/191 (50%), Gaps = 28/191 (14%)
Query: 190 MAIRLLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLMSDI--TRKPSLVVA 247
++++L +Q+EG+ WL NG +LAD+MG+GKT+Q + L S+I T + LV+
Sbjct: 793 ISVKLRDYQMEGVKWLNFLYSFSLNG-ILADDMGLGKTLQVLTFLCSEIYKTNRKVLVIC 851
Query: 248 PTVALMQWKNEIEQHTNKKLSVYMYHGANRTNNLGDFKDVDVILTTYAVLESVYRKQVYG 307
P+ WK+E+++ ++ +Y +R TY++L S Y
Sbjct: 852 PSSLTGHWKSEVKKFF-PFVAAEIYKREDRD--------------TYSILISSYET---- 892
Query: 308 FKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGTPLQNR 367
F+ EK +++ V++DE H ++++ + +N ++ ++ L+GTP+ N
Sbjct: 893 FRNDYLNFIEK------DWFYVVVDEGHVLRNKQTILYSRMNMIRCSRKMVLTGTPVHNS 946
Query: 368 IGEMYSLIRFL 378
+ ++ SL FL
Sbjct: 947 VEDLISLFNFL 957
>7295362 [L] KOG0298 DEAD box-containing helicase-like transcription
factor/DNA repair protein
Length = 1270
Score = 82.0 bits (201), Expect = 3e-15
Identities = 75/240 (31%), Positives = 109/240 (45%), Gaps = 30/240 (12%)
Query: 531 LKRLKGNNDNNPGVIICQLCDDEAEEPIESKCHHRFCRLCINEYIDSFMADEKKL---TC 587
LK LK ++ + P ICQ DD + C H C+ C+ DS + C
Sbjct: 1025 LKHLKEDSADKP-CPICQTQDDVRY--VMMVCGHFVCQHCL----DSMRRKNGRAGVTKC 1077
Query: 588 PVCHIGLSIDLQQQALEVDEELFKKQSIVSRLKMGGKWRSSTKIEALVEELYNLRSDKRT 647
P+C D Q V K SI+ STKI ++VE + ++ +
Sbjct: 1078 PLCRQ----DSPQLYYSVRPGAHK--SIIGDF--------STKISSVVELVLKIKGENEQ 1123
Query: 648 IKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQTIKYFMENIHCEVFLVSLK 707
K IVFSQ+ ++L + L G Q + T D K + N+ C L+ L
Sbjct: 1124 EKIIVFSQWQAILIEIARALSLNGIQ---FRNKCTNKDFDD-FKNPLSNVTC--LLMPLS 1177
Query: 708 AGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRIIEL 767
G LNL EA+ VF+++P NP E Q+ R+HR GQ RP K+ RF + ++IE I+ L
Sbjct: 1178 KGSKGLNLIEATHVFLVEPILNPGDERQAIGRIHRFGQKRPTKVHRFIVNETIEENILSL 1237
Score = 67.8 bits (164), Expect = 6e-11
Identities = 44/143 (30%), Positives = 72/143 (49%), Gaps = 12/143 (8%)
Query: 243 SLVVAPTVALMQWKNEIEQHTNKKLSVYMYHGANRTNNLG--DFKDVDVILTTYAVLES- 299
+++V+P MQW EI +H + L V +Y G + T + D DV+LT Y +L +
Sbjct: 337 TIIVSPNAIKMQWFEEIHKHISPSLKVLLYFGLHSTFWVSPFDLAQYDVVLTDYTILRNE 396
Query: 300 VYR----KQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKK 355
+Y K + + ++ S L +N++RV LDEA ++ TS A+ V L
Sbjct: 397 IYHTTDFKSDRQMRHQQRYMRPNSPLLMVNWWRVCLDEAQMVESSTSAAAEMVRMLPAIN 456
Query: 356 RWCLSGTPLQNRIGEMYSLIRFL 378
RW ++GT I E+ L+ F+
Sbjct: 457 RWAVTGT-----IDELPPLLEFV 474
>Hs6912622_2 [L] KOG0390 DNA repair protein SNF2 family
Length = 808
Score = 81.3 bits (199), Expect = 6e-15
Identities = 53/162 (32%), Positives = 85/162 (51%), Gaps = 7/162 (4%)
Query: 620 KMGGKWRSSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQG 679
K GK + +K+ A++ EL + T K ++ S +T L++++ KR G+ +L G
Sbjct: 537 KESGKLQVLSKLLAVIHEL------RPTEKVVLVSNYTQTLNILQEVCKRHGYAYTRLDG 590
Query: 680 SMTPTQRDQTIKYF-MENIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGD 738
+QR Q + F ++ +FL+S KAGGV LNL S + + D WNP+ + Q+
Sbjct: 591 QTPISQRQQIVDGFNSQHSSFFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMS 650
Query: 739 RVHRIGQFRPVKITRFCIEDSIESRIIELQEKKASMIHATIN 780
RV R GQ PV I R +IE +I + Q K + A ++
Sbjct: 651 RVWRDGQKYPVHIYRLLTTGTIEEKIYQRQISKQGLCGAVVD 692
Score = 74.3 bits (181), Expect = 7e-13
Identities = 53/204 (25%), Positives = 97/204 (46%), Gaps = 31/204 (15%)
Query: 190 MAIRLLPFQLEGLHWLQQ----QEESDYNGGVLADEMGMGKTIQTIALLMSDITRKP--- 242
+ L P Q EG+ +L + + G +LADEMG+GKT+Q I+L+ + + P
Sbjct: 190 LVYHLRPHQKEGIIFLYECVMGMRMNGRCGAILADEMGLGKTLQCISLIWTLQCQGPYGG 249
Query: 243 ------SLVVAPTVALMQWKNEIEQHT-NKKLSVYMYHGANRTNNLGDFKDVDVILTTYA 295
+L+V P + WK E ++ ++++ ++ ++ V++ +Y
Sbjct: 250 KPVIKKTLIVTPGSLVNNWKKEFQKWLGSERIKIFTVDQDHKVEEFIKSIFYSVLIISYE 309
Query: 296 VLESVYRKQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKK 355
+L ++ + +I F +I DE H +K+ T A+ SL +K
Sbjct: 310 ML-----------------LRSLDQIKNIKFDLLICDEGHRLKNSAIKTTTALISLSCEK 352
Query: 356 RWCLSGTPLQNRIGEMYSLIRFLN 379
R L+GTP+QN + E ++LI F+N
Sbjct: 353 RIILTGTPIQNDLQEFFALIDFVN 376
>SPBP35G2.10 [R] KOG0383 Predicted helicase
Length = 1418
Score = 80.5 bits (197), Expect = 9e-15
Identities = 56/195 (28%), Positives = 105/195 (53%), Gaps = 23/195 (11%)
Query: 194 LLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLMSDITRK---PSLVVAPTV 250
L+P+QL+GL+WL + + ++ +LADEMG+GKT+Q I+ + R P LV+ P
Sbjct: 556 LMPYQLKGLNWLYLRWYT-HHPCILADEMGLGKTVQVISFISVLFYRHKCFPVLVIVPHA 614
Query: 251 ALMQWKNEIEQHTNKKLSVYMYHGANRTNNL-GDF-----KDVDVILTTYAVLESVYRKQ 304
+ W+ E+++ L + + G+ + +L D+ KD + T V+ +
Sbjct: 615 TVANWERELKKWA-PFLQINVLVGSEKNRSLVRDYRLINQKDPKHVSTHVLVISA----- 668
Query: 305 VYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGTPL 364
+ +E SLL + +I+DE +K+ S+ ++S+++ + L+GTPL
Sbjct: 669 -------SNVEREISLLRKFQWKVLIVDEGQRLKNDQSSLFYYLSSVKSDFKLLLTGTPL 721
Query: 365 QNRIGEMYSLIRFLN 379
QN + E+++L++FLN
Sbjct: 722 QNNVRELFNLLQFLN 736
Score = 77.4 bits (189), Expect = 8e-14
Identities = 44/130 (33%), Positives = 67/130 (50%), Gaps = 1/130 (0%)
Query: 651 IVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQTIKYF-MENIHCEVFLVSLKAG 709
++FSQF LD++E + + G+ + +R I F N FL+S +AG
Sbjct: 891 LLFSQFIQQLDILEDWFEYKNIAYARFDGASSEMERQSAIDSFNAPNSELSCFLLSTRAG 950
Query: 710 GVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRIIELQE 769
GV +NL A V ILDP +NP + Q+ R HR GQ + V + DS+E +II+ +
Sbjct: 951 GVGINLASADTVIILDPDFNPHQDMQAIARAHRYGQKKKVLVFVLTTRDSVEEKIIQNAQ 1010
Query: 770 KKASMIHATI 779
KK + H +
Sbjct: 1011 KKLVLDHLIV 1020
>CE26384 [L] KOG0298 DEAD box-containing helicase-like transcription
factor/DNA repair protein
Length = 1610
Score = 80.5 bits (197), Expect = 9e-15
Identities = 65/253 (25%), Positives = 110/253 (42%), Gaps = 33/253 (13%)
Query: 243 SLVVAPTVALMQWKNEIEQHTNKKLSVYMYHGANRTNNLG--DFKDVDVILTTYAVLE-- 298
+L++ P + QW EI +H + + V Y G + L + DVILTTY L
Sbjct: 496 TLIILPESLIFQWFTEISKHCSDNIKVMFYFGIRKHGYLQPCEMDSYDVILTTYDTLRNE 555
Query: 299 ---SVYRKQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNT-AKAVNSLQTK 354
S + + ++ T+ S L + F+R+I+DE+ + S+ + + L +
Sbjct: 556 MSFSEEKGPPRNLRNESKTLNLTSSLMHVEFWRIIVDESQVLPHGVSSQLTRMLMKLHAE 615
Query: 355 KRWCLSGTPLQNRIGEMYSLIRFLNIEPFTRYYCKQCSCSSENWRFSDYLHCDDCGHVGM 414
WC++GTPL I +Y L FLN+ PF FS Y+H
Sbjct: 616 NWWCVTGTPLVKSIAGIYPLFNFLNLFPF-----------GSPQFFSQYVH--------P 656
Query: 415 QHTNFFNHFMLKNVQKHGIEGPGLQSFQNIQTLLARIMLRRTKVERADDLGLPPRIVTVR 474
Q+ NF + + K+ + L +L+++M R+TK +++ L LP +
Sbjct: 657 QYLNFALSLRDEALDKNNLPRVFLLE------ILSKMMSRKTKQDKSVQLKLPKLTEVEK 710
Query: 475 KDYFNEEEKDLYQ 487
YF E+ Y+
Sbjct: 711 IIYFTTVEERQYK 723
>CE25143 [L] KOG0390 DNA repair protein SNF2 family
Length = 818
Score = 79.7 bits (195), Expect = 2e-14
Identities = 68/244 (27%), Positives = 115/244 (46%), Gaps = 28/244 (11%)
Query: 151 PFERNTAKLYAHHSELIDVFKKLQESPIRQVERAPQPDGMAIRLLPFQLEGLHWLQQQEE 210
P+ LYA E + +L+E R+V P I L P Q +G+ ++
Sbjct: 162 PYHEGALILYA--PEHLSEHAQLKEDKDRKVHVVADPVVGKI-LRPHQRDGVKFMWDCVT 218
Query: 211 S----DYNGGVLADEMGMGKTIQTIALLMSDITRKP--------SLVVAPTVALMQWKNE 258
+++G ++ADEMG+GKT+Q I+LL + + + P S++V P+ + W E
Sbjct: 219 GINIPEFHGCIMADEMGLGKTLQCISLLWTLLRQSPDACPTVSKSIIVCPSSLVKNWDKE 278
Query: 259 IEQHTNKKLSVYMYHGANRTNN---LGDFKDVDVILTTYAVLESVYRKQVYGFKRKAGTV 315
I++ +L+ R L F + VL Y F+ A
Sbjct: 279 IKKWLGTRLNAMPVDSGKREQIIACLNSFMADSKMRCAIPVLIISYET----FRLYA--- 331
Query: 316 KEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGTPLQNRIGEMYSLI 375
++LHS + VI DE H +K+ + T +A++ L+ +R +SGTP+QN + E +SL+
Sbjct: 332 ---NILHSGDVGIVICDEGHRLKNSENLTYQALSGLKCARRVLISGTPIQNDLLEYFSLV 388
Query: 376 RFLN 379
F+N
Sbjct: 389 NFVN 392
Score = 74.3 bits (181), Expect = 7e-13
Identities = 49/153 (32%), Positives = 77/153 (50%), Gaps = 5/153 (3%)
Query: 649 KSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQTIKYFME---NIHCEVFLVS 705
K ++ S +T +D K G+ V+L GSM+ QR + + F + I C FL+S
Sbjct: 566 KFVLVSNYTQTIDQFMELCKLRGYDFVRLDGSMSIKQRSKIVDTFNDPASTIFC--FLLS 623
Query: 706 LKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRII 765
KAGG LNL A+++ + DP WNP+ + Q+ RV R GQ + I R SIE ++
Sbjct: 624 SKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKMCFIYRLLATGSIEEKMF 683
Query: 766 ELQEKKASMIHATINQDEAAINRLTPADLQFLF 798
+ Q K ++ ++ E + L+ LF
Sbjct: 684 QRQTHKKALSSCVVDAGEDVARHFSSEQLRELF 716
>Hs4506397 [L] KOG0390 DNA repair protein SNF2 family
Length = 747
Score = 79.3 bits (194), Expect = 2e-14
Identities = 89/375 (23%), Positives = 159/375 (41%), Gaps = 72/375 (19%)
Query: 194 LLPFQLEGLHWLQQQEES----DYNGGVLADEMGMGKTIQTIALLMSDITRKP------- 242
L P Q EG+ +L + S +G ++ADEMG+GKT+Q I L+ + + + P
Sbjct: 153 LRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPECKPEID 212
Query: 243 -SLVVAPTVALMQWKNEIEQHTNKKLSVYMYHGANRTN---NLGDFKDVDVILTTYAVLE 298
++VV+P+ + W NE+ + ++ G ++ L F + + +L
Sbjct: 213 KAVVVSPSSLVKNWYNEVGKWLGGRIQPLAIDGGSKDEIDQKLEGFMNQRGARVSSPILI 272
Query: 299 SVYRKQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWC 358
Y F+ G +++ S+ VI DE H +K+ + T +A++SL T +R
Sbjct: 273 ISYET----FRLHVGVLQKGSV------GLVICDEGHRLKNSENQTYQALDSLNTSRRVL 322
Query: 359 LSGTPLQNRIGEMYSLIRFLNIEPFTRYYCKQCSCSSENWRFSDYLHCDDCGHVGMQHTN 418
+SGTP+QN + E +SL+ F+N G +G H
Sbjct: 323 ISGTPIQNDLLEYFSLVHFVN-----------------------------SGILGTAH-E 352
Query: 419 FFNHF---MLKNVQKHGIEGP---GLQSFQNIQTLLARIMLRRTKVERADDLG--LPPRI 470
F HF +LK E G + + + +++ R ++RRT +D L LP +I
Sbjct: 353 FKKHFELPILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRT----SDILSKYLPVKI 408
Query: 471 VTVRKDYFNEEEKDLYQSLYSDIKRKYNSYVEEGVVLNNYANIFTLITRMRQMADHPDLV 530
V + +LY+ K EE + + + IT ++++ +HP L+
Sbjct: 409 EQVVCCRLTPLQTELYKRFLRQAKP-----AEELLEGKMSVSSLSSITSLKKLCNHPALI 463
Query: 531 LKRLKGNNDNNPGVI 545
+ D G +
Sbjct: 464 YDKCVEEEDGFVGAL 478
Score = 73.9 bits (180), Expect = 9e-13
Identities = 45/151 (29%), Positives = 81/151 (52%), Gaps = 1/151 (0%)
Query: 649 KSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQTIKYFMENIHCE-VFLVSLK 707
K ++ S +T LDL E + + V+L G+M+ +R + ++ F + VF++S K
Sbjct: 515 KVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSK 574
Query: 708 AGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRIIEL 767
AGG LNL A+++ + DP WNP+ + Q+ RV R GQ + I R +IE +I +
Sbjct: 575 AGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQR 634
Query: 768 QEKKASMIHATINQDEAAINRLTPADLQFLF 798
Q K ++ +++++ + +L+ LF
Sbjct: 635 QSHKKALSSCVVDEEQDVERHFSLGELKELF 665
>Hs20336209 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box superfamily
Length = 2492
Score = 79.3 bits (194), Expect = 2e-14
Identities = 65/230 (28%), Positives = 114/230 (49%), Gaps = 36/230 (15%)
Query: 175 ESPIRQVERAPQPDGMAIRLLPFQLEGLHWL--------QQQEESDYNGGVLADEMGMGK 226
+ P+ QV R M I+L P Q++G+ ++ ++ ++S +G +LA MG+GK
Sbjct: 1546 KEPLVQVHR-----NMVIKLKPHQVDGVQFMWDCCCESVKKTKKSPGSGCILAHCMGLGK 1600
Query: 227 TIQTIA-----LLMSDITRKPSLVVAPTVALMQWKNEIEQ-----HTNKKLSVYMYHGAN 276
T+Q ++ LL + +LVV P + W NE E+ ++KL V
Sbjct: 1601 TLQVVSFLHTVLLCDKLDFSTALVVCPLNTALNWMNEFEKWQEGLKDDEKLEVSELATVK 1660
Query: 277 RTNNLGDF-----KDVDVILTTYAVLESVYRKQVYGFKRKAGTVKE---KSLLHSINFYR 328
R +D V++ Y +YR G K+ +KE K+L+ +
Sbjct: 1661 RPQERSYMLQRWQEDGGVMIIGY----EMYRNLAQGRNVKSRKLKEIFNKALVDPGPDF- 1715
Query: 329 VILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGTPLQNRIGEMYSLIRFL 378
V+ DE H +K+ S +KA+NS+++++R L+GTPLQN + E + ++ F+
Sbjct: 1716 VVCDEGHILKNEASAVSKAMNSIRSRRRIILTGTPLQNNLIEYHCMVNFI 1765
Score = 76.6 bits (187), Expect = 1e-13
Identities = 53/170 (31%), Positives = 83/170 (48%), Gaps = 28/170 (16%)
Query: 649 KSIVFSQFTSMLDLVEWRLKRAGFQTV----------------------KLQGSMTPTQR 686
K +VFSQ LDL+E L+ A + +L GS T R
Sbjct: 2036 KVLVFSQSLISLDLIEDFLELASREKTEDKDKPLIYKGEGKWLRNIDYYRLDGSTTAQSR 2095
Query: 687 DQTIKYFME--NIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIG 744
+ + F + N+ +F++S KAG + +NL A++V I D WNPS + QS RV+R G
Sbjct: 2096 KKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDASWNPSYDIQSIFRVYRFG 2155
Query: 745 QFRPVKITRFCIEDSIESRIIELQEKKASMIHATINQDEA----AINRLT 790
Q +PV + RF + ++E +I + Q K S+ ++Q + +N LT
Sbjct: 2156 QTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVDQQQVERHFTMNELT 2205
>Hs20336207 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box superfamily
Length = 2288
Score = 79.3 bits (194), Expect = 2e-14
Identities = 65/230 (28%), Positives = 114/230 (49%), Gaps = 36/230 (15%)
Query: 175 ESPIRQVERAPQPDGMAIRLLPFQLEGLHWL--------QQQEESDYNGGVLADEMGMGK 226
+ P+ QV R M I+L P Q++G+ ++ ++ ++S +G +LA MG+GK
Sbjct: 1342 KEPLVQVHR-----NMVIKLKPHQVDGVQFMWDCCCESVKKTKKSPGSGCILAHCMGLGK 1396
Query: 227 TIQTIA-----LLMSDITRKPSLVVAPTVALMQWKNEIEQ-----HTNKKLSVYMYHGAN 276
T+Q ++ LL + +LVV P + W NE E+ ++KL V
Sbjct: 1397 TLQVVSFLHTVLLCDKLDFSTALVVCPLNTALNWMNEFEKWQEGLKDDEKLEVSELATVK 1456
Query: 277 RTNNLGDF-----KDVDVILTTYAVLESVYRKQVYGFKRKAGTVKE---KSLLHSINFYR 328
R +D V++ Y +YR G K+ +KE K+L+ +
Sbjct: 1457 RPQERSYMLQRWQEDGGVMIIGY----EMYRNLAQGRNVKSRKLKEIFNKALVDPGPDF- 1511
Query: 329 VILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGTPLQNRIGEMYSLIRFL 378
V+ DE H +K+ S +KA+NS+++++R L+GTPLQN + E + ++ F+
Sbjct: 1512 VVCDEGHILKNEASAVSKAMNSIRSRRRIILTGTPLQNNLIEYHCMVNFI 1561
Score = 76.6 bits (187), Expect = 1e-13
Identities = 53/170 (31%), Positives = 83/170 (48%), Gaps = 28/170 (16%)
Query: 649 KSIVFSQFTSMLDLVEWRLKRAGFQTV----------------------KLQGSMTPTQR 686
K +VFSQ LDL+E L+ A + +L GS T R
Sbjct: 1832 KVLVFSQSLISLDLIEDFLELASREKTEDKDKPLIYKGEGKWLRNIDYYRLDGSTTAQSR 1891
Query: 687 DQTIKYFME--NIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIG 744
+ + F + N+ +F++S KAG + +NL A++V I D WNPS + QS RV+R G
Sbjct: 1892 KKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDASWNPSYDIQSIFRVYRFG 1951
Query: 745 QFRPVKITRFCIEDSIESRIIELQEKKASMIHATINQDEA----AINRLT 790
Q +PV + RF + ++E +I + Q K S+ ++Q + +N LT
Sbjct: 1952 QTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVDQQQVERHFTMNELT 2001
>Hs20336205 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box superfamily
Length = 2454
Score = 79.3 bits (194), Expect = 2e-14
Identities = 65/230 (28%), Positives = 114/230 (49%), Gaps = 36/230 (15%)
Query: 175 ESPIRQVERAPQPDGMAIRLLPFQLEGLHWL--------QQQEESDYNGGVLADEMGMGK 226
+ P+ QV R M I+L P Q++G+ ++ ++ ++S +G +LA MG+GK
Sbjct: 1508 KEPLVQVHR-----NMVIKLKPHQVDGVQFMWDCCCESVKKTKKSPGSGCILAHCMGLGK 1562
Query: 227 TIQTIA-----LLMSDITRKPSLVVAPTVALMQWKNEIEQ-----HTNKKLSVYMYHGAN 276
T+Q ++ LL + +LVV P + W NE E+ ++KL V
Sbjct: 1563 TLQVVSFLHTVLLCDKLDFSTALVVCPLNTALNWMNEFEKWQEGLKDDEKLEVSELATVK 1622
Query: 277 RTNNLGDF-----KDVDVILTTYAVLESVYRKQVYGFKRKAGTVKE---KSLLHSINFYR 328
R +D V++ Y +YR G K+ +KE K+L+ +
Sbjct: 1623 RPQERSYMLQRWQEDGGVMIIGY----EMYRNLAQGRNVKSRKLKEIFNKALVDPGPDF- 1677
Query: 329 VILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGTPLQNRIGEMYSLIRFL 378
V+ DE H +K+ S +KA+NS+++++R L+GTPLQN + E + ++ F+
Sbjct: 1678 VVCDEGHILKNEASAVSKAMNSIRSRRRIILTGTPLQNNLIEYHCMVNFI 1727
Score = 76.6 bits (187), Expect = 1e-13
Identities = 53/170 (31%), Positives = 83/170 (48%), Gaps = 28/170 (16%)
Query: 649 KSIVFSQFTSMLDLVEWRLKRAGFQTV----------------------KLQGSMTPTQR 686
K +VFSQ LDL+E L+ A + +L GS T R
Sbjct: 1998 KVLVFSQSLISLDLIEDFLELASREKTEDKDKPLIYKGEGKWLRNIDYYRLDGSTTAQSR 2057
Query: 687 DQTIKYFME--NIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIG 744
+ + F + N+ +F++S KAG + +NL A++V I D WNPS + QS RV+R G
Sbjct: 2058 KKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDASWNPSYDIQSIFRVYRFG 2117
Query: 745 QFRPVKITRFCIEDSIESRIIELQEKKASMIHATINQDEA----AINRLT 790
Q +PV + RF + ++E +I + Q K S+ ++Q + +N LT
Sbjct: 2118 QTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVDQQQVERHFTMNELT 2167
>Hs22054523 [L] KOG0298 DEAD box-containing helicase-like transcription
factor/DNA repair protein
Length = 1669
Score = 78.2 bits (191), Expect = 5e-14
Identities = 68/317 (21%), Positives = 130/317 (40%), Gaps = 60/317 (18%)
Query: 235 MSDITRKPSLVVAPTVALMQWKNEIEQHT-NKKLSVYMYHGANRTNNLGD--FKDVDVIL 291
M ++ + +L+++P+ QW +EI +H + L V +Y G + L + D+++
Sbjct: 747 MEPVSTRATLIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDGFLQPHFLAEQDIVI 806
Query: 292 TTYAVLESVYR---------KQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTS 342
TY VL S + + + + S L ++ ++R+ LDEA ++ T
Sbjct: 807 ITYDVLRSELNYVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTV 866
Query: 343 NTAKAVNSLQTKKRWCLSGTPLQNRIGEMYSLIRFLNIEPFTRYYCKQCSCSSENWRFSD 402
A+ L RWC+SGTP+Q + +++ L+ FL IEP+ C W
Sbjct: 867 KAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVVFLGIEPY---------CVKHWW---- 913
Query: 403 YLHCDDCGHVGMQHTNFFNHFMLKNVQKHGIEGPGLQSFQNIQTLLARIMLRRTKVERAD 462
+ + KN Q++ + +A+I+ R K + D
Sbjct: 914 -------------VRLLYRPYCKKNP-------------QHLYSFIAKILWRSAKKDVID 947
Query: 463 DLGLPPRIVTVRKDYFNEEEKDLYQSLY----SDIKRKYNSYVEEGVVLNN-----YANI 513
+ +PP+ + +F+ E+ Y + D+ K + + L++ +I
Sbjct: 948 QIQIPPQTEEIHWLHFSPVERHFYHRQHEVCCQDVVVKLRKISDWALKLSSLDRRTVTSI 1007
Query: 514 FTLITRMRQMADHPDLV 530
+ R+RQ HP V
Sbjct: 1008 LYPLLRLRQACCHPQAV 1024
Score = 56.6 bits (135), Expect = 1e-07
Identities = 56/242 (23%), Positives = 102/242 (42%), Gaps = 47/242 (19%)
Query: 529 LVLKRLKGNNDNNPGVII---CQLCDDE-AEEPIESKCHHRFCRLCINEYIDSFMADEKK 584
L L L+ + D G + C +C + ++ C H FC CI+ I+ + +
Sbjct: 1452 LYLTNLEKSQDKTSGGVNPEPCPICARQLGKQWAVLTCGHCFCNECISIIIEQYSVGSHR 1511
Query: 585 --LTCPVCHIGLSIDLQQQALEVDEELFKKQSIVSRLKMGGKWRSSTKIEALVEELYNLR 642
+ C +C Q + + +F + + KW +++ ++
Sbjct: 1512 SSIKCAICR-------QTTSHKEISYVFTSEKANQEEDIPVKW----------QDVLDII 1554
Query: 643 SDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQTIKYFMENIHCEVF 702
S T ++ F+Q + R+K Q +++ +RD I +
Sbjct: 1555 SKALTDNNMEFAQIS--------RVKT-------FQENLSAFKRDPQIN---------IL 1590
Query: 703 LVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIES 762
L+ L G L + EA+ V +++P NP+ E Q+ RVHRIGQ +P + RF I+ +IE
Sbjct: 1591 LLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEE 1650
Query: 763 RI 764
R+
Sbjct: 1651 RM 1652
>At5g63950 [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26
(contains SNF2 family DNA-dependent ATPase domain)
Length = 1053
Score = 77.4 bits (189), Expect = 8e-14
Identities = 84/358 (23%), Positives = 150/358 (41%), Gaps = 65/358 (18%)
Query: 187 PDGMAIRLLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQT---IALLMSDITRKPS 243
P +A L P Q EGL+WL GG+L D+MG+GKT+Q +A L K +
Sbjct: 370 PGKIATMLYPHQREGLNWLWSLHTQG-KGGILGDDMGLGKTMQICSFLAGLFHSKLIKRA 428
Query: 244 LVVAPTVALMQWKNEIEQHTNKKLSVYMYHGANRTNNLGDFKDV----DVILTTYAVLES 299
LVVAP L W E+ +++ Y+G + D + ++LTTY ++ +
Sbjct: 429 LVVAPKTLLPHWMKELATVGLSQMT-REYYGTSTKAREYDLHHILQGKGILLTTYDIVRN 487
Query: 300 VYRKQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCL 359
K + G E + +ILDE H IK+ + AK++ + + R +
Sbjct: 488 -NTKALQGDDHYTDEDDEDGN----KWDYMILDEGHLIKNPNTQRAKSLLEIPSSHRIII 542
Query: 360 SGTPLQNRIGEMYSLIRFLNIEPFTRYYCKQCSCSSENWRFSDYLHCDDCGHVGMQHTNF 419
SGTP+QN ++ L+ F + Y
Sbjct: 543 SGTPIQNN-------LKALSFNRFKQNY-------------------------------- 563
Query: 420 FNHFMLKNVQKHGIEGP---GLQSFQNIQTLLARIMLRRTKVERADDLGLPPRIVTVRKD 476
H++L+ K+ + G +N++ + LRR K E D G ++
Sbjct: 564 -EHYILRGTDKNATDREQRIGSTVAKNLREHIQPFFLRRLKSEVFGDDGATSKL------ 616
Query: 477 YFNEEEKDLYQSLYSDIKRKYNSYVEEGVVLNNY-ANIFTLITRMRQMADHPDLVLKR 533
++E ++ L + ++ Y +++ +VL+ + + +T ++++ DHP L+ KR
Sbjct: 617 -SKKDEIVVWLRLTACQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLTKR 673
Score = 75.9 bits (185), Expect = 2e-13
Identities = 46/150 (30%), Positives = 77/150 (50%), Gaps = 5/150 (3%)
Query: 650 SIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQTIKYFMENIHCEVFLVSLKAG 709
S S S+LD L G+ +++ G+ R +T++ F E +FL++ + G
Sbjct: 718 SCKLSFIMSLLD----SLTSNGYSFLRIDGTTKAPDRLKTVEEFQEGHVAPIFLLTSQVG 773
Query: 710 GVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRIIELQE 769
G+ L L +A +V ++DP WNPS + QS DR +RIGQ + V + R ++E +I Q
Sbjct: 774 GLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQTKDVIVYRLMTSATVEEKIYRKQV 833
Query: 770 KKASMIHATINQDEAAINRLTPADLQFLFN 799
K + T + + I + DL+ LF+
Sbjct: 834 YKGGLF-KTATEHKEQIRYFSQQDLRELFS 862
>At2g28290 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1339
Score = 77.4 bits (189), Expect = 8e-14
Identities = 62/229 (27%), Positives = 105/229 (45%), Gaps = 42/229 (18%)
Query: 193 RLLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQT------------IALLMSDITR 240
+L +Q+ GL WL + NG +LADEMG+GKT+Q L+ + R
Sbjct: 792 KLREYQMNGLRWLVSLYNNHLNG-ILADEMGLGKTVQMGLGKTVQVISLICYLMETKNDR 850
Query: 241 KPSLVVAPTVALMQWKNEIEQHTNKKLSVYMYHGANRTNNLGDFKD------VDVILTTY 294
P LVV P+ L W++EI + + L FK+ +V+LTTY
Sbjct: 851 GPFLVVVPSSVLPGWQSEINFWAPSIHKIVYCGTPDERRKL--FKEQIVHQKFNVLLTTY 908
Query: 295 AVLESVYRKQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTK 354
L + + ++ L I+++ +I+DE H IK+ + + +
Sbjct: 909 EYLMNKH---------------DRPKLSKIHWHYIIIDEGHRIKNASCKLNADLKHYVSS 953
Query: 355 KRWCLSGTPLQNRIGEMYSLIRFL------NIEPFTRYYCKQCSCSSEN 397
R L+GTPLQN + E+++L+ FL + E F++++ K + E+
Sbjct: 954 HRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFQSNGES 1002
Score = 76.6 bits (187), Expect = 1e-13
Identities = 49/151 (32%), Positives = 81/151 (53%), Gaps = 3/151 (1%)
Query: 630 KIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQT 689
K+E L L L++ + + FS T +LD++E L G++ ++L G + R
Sbjct: 1111 KLEMLDRMLPKLKATDHRV--LFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGDRGAL 1168
Query: 690 IKYFMEN-IHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRP 748
I F ++ +FL+S++AGGV +NL A V + D WNP V+ Q+ R HRIGQ +
Sbjct: 1169 IDGFNKSGSPFFIFLLSIRAGGVGVNLQAADTVILFDTDWNPQVDLQAQARAHRIGQKKD 1228
Query: 749 VKITRFCIEDSIESRIIELQEKKASMIHATI 779
V + RF +S+E ++ E K + + +I
Sbjct: 1229 VLVLRFETVNSVEEQVRASAEHKLGVANQSI 1259
>CE23323 [L] KOG0390 DNA repair protein SNF2 family
Length = 751
Score = 77.0 bits (188), Expect = 1e-13
Identities = 46/153 (30%), Positives = 82/153 (53%), Gaps = 3/153 (1%)
Query: 623 GKWRSSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMT 682
G + S K+ ALV+ + R + +++ S + LD+++ + F+ ++L G
Sbjct: 429 GGVKESGKLTALVDMIKCFRLLQEC--TVIVSNYIETLDMIQQLCEYLNFKVLRLDGKTQ 486
Query: 683 PTQRDQTIKYFMENIH-CEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVH 741
R + ++ F ++ +FL+S KAGGV LNL AS++ + D WNP+ + Q+ R+
Sbjct: 487 VPDRQKLVRTFNDHRDPSNIFLLSTKAGGVGLNLIGASRLVLFDSDWNPANDQQAMARIW 546
Query: 742 RIGQFRPVKITRFCIEDSIESRIIELQEKKASM 774
R GQ RP I R +IE ++++ Q KK +
Sbjct: 547 RDGQVRPCHIYRLITTGTIEEKMLQRQIKKTGL 579
>At2g44980 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 861
Score = 76.6 bits (187), Expect = 1e-13
Identities = 50/168 (29%), Positives = 81/168 (47%), Gaps = 13/168 (7%)
Query: 626 RSSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQ 685
++S K+ L + L L + ++FSQ TS LD+++ ++ + +L GS+ +
Sbjct: 365 QASGKLLVLDQLLKRLHDSGHRV--LLFSQMTSTLDILQDFMELRRYSYERLDGSVRAEE 422
Query: 686 RDQTIKYF-----------MENIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEW 734
R IK F ++ + VF++S +AGGV LNL A V + WNP V+
Sbjct: 423 RFAAIKNFSAKTERGLDSEVDGSNAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDK 482
Query: 735 QSGDRVHRIGQFRPVKITRFCIEDSIESRIIELQEKKASMIHATINQD 782
Q+ R HRIGQ V E S+E I+ E+K + H + +
Sbjct: 483 QALQRAHRIGQISHVLSINLVTEHSVEEVILRRAERKLQLSHNVVGDN 530
Score = 74.3 bits (181), Expect = 7e-13
Identities = 82/356 (23%), Positives = 148/356 (41%), Gaps = 68/356 (19%)
Query: 189 GMAIRLLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLMSDITRK----PSL 244
G+ L P Q+EG+ WL Q+ N + D+MG+GKT+Q I+ L R+ P L
Sbjct: 46 GVTATLKPHQVEGVSWLIQKYLLGVNVVLELDQMGLGKTLQAISFLSYLKFRQGLPGPFL 105
Query: 245 VVAPTVALMQWKNEIEQHTNKKLSVYMYHG--------ANRTNNLGDFKDVDVILTTYAV 296
V+ P W +EI + T L V Y G + G F DV+LTTY +
Sbjct: 106 VLCPLSVTDGWVSEINRFT-PNLEVLRYVGDKYCRLDMRKSMYDHGHFLPFDVLLTTYDI 164
Query: 297 LESVYRKQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKA-VNSLQTKK 355
+ ++ L I + I+DEA +K+ S + +
Sbjct: 165 -----------------ALVDQDFLSQIPWQYAIIDEAQRLKNPNSVLYNVLLEQFLIPR 207
Query: 356 RWCLSGTPLQNRIGEMYSLIRFLNIEPFTRYYCKQCSCSSENWRFSDYLHCDDCGHVGMQ 415
R ++GTP+QN + E+++L+ F C + + S + D G+
Sbjct: 208 RLLITGTPIQNNLTELWALMHF----------CMPLVFGTLDQFLSAFKETGD----GLD 253
Query: 416 HTNFFNHFMLKNVQKHGIEGPGLQSFQNIQTLLARIMLRRTK--VERADDLGLPPRIVTV 473
+N +++++++ +L MLRRTK + + +L LPP
Sbjct: 254 VSN------------------DKETYKSLKFILGAFMLRRTKSLLIESGNLVLPPLTELT 295
Query: 474 RKDYFNEEEKDLYQSLYSDIKRKYNSYVEEGVVLNNYANIFTLITRMRQMADHPDL 529
+K +Y S+ ++++ +E +N+ ++ ++ ++R+ HP L
Sbjct: 296 VMVPLVSLQKKIYTSI---LRKELPGLLELSSGGSNHTSLQNIVIQLRKACSHPYL 348
>At4g31900 [R] KOG0383 Predicted helicase
Length = 1067
Score = 75.5 bits (184), Expect = 3e-13
Identities = 46/164 (28%), Positives = 83/164 (50%), Gaps = 3/164 (1%)
Query: 627 SSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQR 686
+S K++ L + + L+ + ++++QF L L+E + ++ G ++ +R
Sbjct: 412 ASGKLQLLDKMMVKLKEQGHRV--LIYTQFQHTLYLLEDYFTFKNWNYERIDGKISGPER 469
Query: 687 DQTIKYF-MENIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQ 745
I F EN + FL+S +AGG+ +NL A V I D WNP + Q+ RVHR+GQ
Sbjct: 470 QVRIDRFNAENSNRFCFLLSTRAGGIGINLATADTVIIYDSDWNPHADLQAMARVHRLGQ 529
Query: 746 FRPVKITRFCIEDSIESRIIELQEKKASMIHATINQDEAAINRL 789
V I R + ++E R++E+ + K + H + + + L
Sbjct: 530 TNKVMIYRLIHKGTVEERMMEITKNKMLLEHLVVGKQHLCQDEL 573
Score = 54.7 bits (130), Expect = 6e-07
Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Query: 187 PDGMAIRLLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLMS--DITRKPSL 244
P+ + L +QLEGL++L+ N +LADEMG+GKTIQ+IA L S + P L
Sbjct: 218 PEFLTGTLHTYQLEGLNFLRYSWSKKTNV-ILADEMGLGKTIQSIAFLASLFEENLSPHL 276
Query: 245 VVAPTVALMQWKNEIEQHTNKKLSVYMYHGANRTNNL 281
VVAP + W+ E ++V MY G + ++
Sbjct: 277 VVAPLSTIRNWEREFATWA-PHMNVVMYTGDSEARDV 312
>SPCP25A2.02c [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26
(contains SNF2 family DNA-dependent ATPase domain)
Length = 973
Score = 74.3 bits (181), Expect = 7e-13
Identities = 41/125 (32%), Positives = 70/125 (55%), Gaps = 1/125 (0%)
Query: 645 KRTIKSIVFSQFTSMLDLVEWRLKRA-GFQTVKLQGSMTPTQRDQTIKYFMENIHCEVFL 703
K+ ++++FSQ MLD++E LK ++ GS + R + F +N + +VFL
Sbjct: 639 KQGHRTLLFSQTRQMLDILEIGLKDLPDVHYCRMDGSTSIALRQDLVDNFNKNEYFDVFL 698
Query: 704 VSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESR 763
++ + GG+ +NL A +V + DP WNPS + Q+ +R R+GQ + V + R +IE +
Sbjct: 699 LTTRVGGLGVNLTGADRVILFDPDWNPSTDAQARERAWRLGQKKDVVVYRLMTAGTIEEK 758
Query: 764 IIELQ 768
I Q
Sbjct: 759 IYHRQ 763
>YJR035w [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26
(contains SNF2 family DNA-dependent ATPase domain)
Length = 1085
Score = 72.0 bits (175), Expect = 3e-12
Identities = 42/129 (32%), Positives = 70/129 (53%), Gaps = 6/129 (4%)
Query: 645 KRTIKSIVFSQFTSMLDLVEWRLKR-----AGFQTVKLQGSMTPTQRDQTIKYFMENIHC 699
K+ K+++F+Q MLD++E + + +++ G+ R + F N
Sbjct: 665 KQGYKALLFTQSRQMLDILEEFISTKDPDLSHLNYLRMDGTTNIKGRQSLVDRF-NNESF 723
Query: 700 EVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDS 759
+VFL++ + GG+ +NL A+++ I DP WNPS + Q+ +R RIGQ R V I R + S
Sbjct: 724 DVFLLTTRVGGLGVNLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVSIYRLMVGGS 783
Query: 760 IESRIIELQ 768
IE +I Q
Sbjct: 784 IEEKIYHRQ 792
>At2g18760 [KL] KOG0387 Transcription-coupled repair protein CSB/RAD26
(contains SNF2 family DNA-dependent ATPase domain)
Length = 1187
Score = 72.0 bits (175), Expect = 3e-12
Identities = 61/221 (27%), Positives = 96/221 (42%), Gaps = 36/221 (16%)
Query: 187 PDGMAIRLLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLMS---DITRKPS 243
P+ + +L +Q G+ WL + GG++ DEMG+GKTIQ ++ L S KPS
Sbjct: 378 PECIFRKLFDYQRVGVQWLWELH-CQRAGGIIGDEMGLGKTIQVLSFLGSLHFSKMYKPS 436
Query: 244 LVVAPTVALMQWKNEIEQHTNKKLSVYMYHGANRTNNLG--------------------- 282
+++ P L QW+ E Q V + H + + + G
Sbjct: 437 IIICPVTLLRQWRRE-AQKWYPDFHVEILHDSAQDSGHGKGQGKASESDYDSESSVDSDH 495
Query: 283 -----DFKDVDVILTTYAVLESVYRKQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNI 337
+ K D +L ES Y R G EK L +I + +LDE H I
Sbjct: 496 EPKSKNTKKWDSLLNRVLNSESGLLITTYEQLRLQG---EKLL--NIEWGYAVLDEGHRI 550
Query: 338 KDRTSNTAKAVNSLQTKKRWCLSGTPLQNRIGEMYSLIRFL 378
++ S+ LQT R ++G P+QN++ E++SL F+
Sbjct: 551 RNPNSDITLVCKQLQTVHRIIMTGAPIQNKLTELWSLFDFV 591
Score = 69.3 bits (168), Expect = 2e-11
Identities = 40/118 (33%), Positives = 62/118 (51%)
Query: 651 IVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQTIKYFMENIHCEVFLVSLKAGG 710
++FSQ MLD++E L + ++ G QR I F + VF+++ K GG
Sbjct: 747 LLFSQTQQMLDILESFLVANEYSYRRMDGLTPVKQRMALIDEFNNSEDMFVFVLTTKVGG 806
Query: 711 VALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRIIELQ 768
+ NL A++V I DP WNPS + Q+ +R RIGQ + V + R +IE ++ Q
Sbjct: 807 LGTNLTGANRVIIFDPDWNPSNDMQARERAWRIGQKKDVTVYRLITRGTIEEKVYHRQ 864
>Hs4757978 [K] KOG0385 Chromatin remodeling complex WSTF-ISWI small subunit
Length = 220
Score = 71.6 bits (174), Expect = 4e-12
Identities = 54/193 (27%), Positives = 90/193 (45%), Gaps = 26/193 (13%)
Query: 201 GLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLMSDITRK----PSLVVAPTVALMQWK 256
G +WL Q+ NG +L DEMG+GKT QTIAL + R P L++ P V Q +
Sbjct: 15 GSNWLAQRFHCQ-NGCILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLILCPYVCFEQLE 73
Query: 257 NEIEQHTNKKLSVYMYHGANRT----NNLGDFKDVDVILTTYAVLESVYRKQVYGFKRKA 312
+ ++ + +L V+LTTY +
Sbjct: 74 RRNAEICSRSFLCNICSDKEERACLQQDLKQESRFHVLLTTYEIC--------------- 118
Query: 313 GTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGTPLQNRIGEMY 372
+K+ S L S + +++DEAH +K+++S K ++ L+GTP+QN + E+Y
Sbjct: 119 --LKDASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLQELY 176
Query: 373 SLIRFLNIEPFTR 385
SL+ F+ + F++
Sbjct: 177 SLLSFVEPDLFSK 189
>Hs15805014 [R] KOG0391 SNF2 family DNA-dependent ATPase
Length = 3124
Score = 70.5 bits (171), Expect = 1e-11
Identities = 80/354 (22%), Positives = 148/354 (41%), Gaps = 71/354 (20%)
Query: 194 LLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIA----LLMSDITRKPSLVVAPT 249
L +Q GL WL + + NG +LADE G+GKT+Q IA L ++ P LVV +
Sbjct: 1055 LRDYQKIGLDWLAKLYRKNLNG-ILADEAGLGKTVQIIAFFAHLACNEGNWGPHLVVVRS 1113
Query: 250 VALMQWKNEIEQHTNKKLSVYMYHGANRT-----NNLGDFKDVDVILTTYAVLESVYRKQ 304
+++W+ E+++ L + Y G++R + V +T+Y + + +
Sbjct: 1114 CNILKWELELKRWC-PGLKILSYIGSHRELKAKRQEWAEPNSFHVCITSY----TQFFRG 1168
Query: 305 VYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGTPL 364
+ F R + + +++DE +K T +AV +LQ+++R L +PL
Sbjct: 1169 LTAFTR-------------VRWKCLVIDEMQRVKGMTERHWEAVFTLQSQQRLLLIDSPL 1215
Query: 365 QNRIGEMYSLIRFLNIEPFTRYYCKQCSCSSENWRFSDYLHCDDCGHVGMQHTNFFNHFM 424
N E+++++ FL Y SE DY H
Sbjct: 1216 HNTFLELWTMVHFLVPGISRPYLSSPLRAPSE--ESQDYYH------------------- 1254
Query: 425 LKNVQKHGIEGPGLQSFQNIQTLLARIMLRRTKVERADDLGLPPRIVTVRKDYFNEEEKD 484
++ H + P +LRRTK R + L + V K + +K
Sbjct: 1255 KVVIRLHRVTQP--------------FILRRTK--RDVEKQLTKKYEHVLKCRLSNRQKA 1298
Query: 485 LYQSLYSDIKRKYNSYVEEGVVLNNYANIFTLITRMRQMADHPDLVLKRLKGNN 538
LY+ + +E + ++ N+ +++ R++++ +HP LV R G++
Sbjct: 1299 LYEDVI------LQPGTQEALKSGHFVNVLSILVRLQRICNHPGLVEPRHPGSS 1346
Score = 53.5 bits (127), Expect = 1e-06
Identities = 37/139 (26%), Positives = 70/139 (49%), Gaps = 2/139 (1%)
Query: 628 STKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRD 687
S K+EAL L L+S+ R + ++ SQ MLD++E L V++ + + QR
Sbjct: 1861 SGKLEALAILLQKLKSEGRRV--LILSQMILMLDILEMFLNFHYLTYVRIDENASSEQRQ 1918
Query: 688 QTIKYFMENIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFR 747
+ ++ F + ++S + +NL EA V D NP ++ ++ + RIG+ +
Sbjct: 1919 ELMRSFNRDRRIFCAILSTHSRTTGINLVEADTVVFYDNDLNPVMDAKAQEWCDRIGRCK 1978
Query: 748 PVKITRFCIEDSIESRIIE 766
+ I R +SIE ++++
Sbjct: 1979 DIHIYRLVSGNSIEEKLLK 1997
>CE17314 [K] KOG1015 Transcription regulator XNP/ATRX DEAD-box superfamily
Length = 1359
Score = 69.3 bits (168), Expect = 2e-11
Identities = 43/120 (35%), Positives = 64/120 (52%), Gaps = 4/120 (3%)
Query: 671 GFQTVKLQGSMTPTQRDQTIKYFME--NIHCEVFLVSLKAGGVALNLCEASQVFILDPWW 728
G + + GS+ +RD F + N+ + L+S +AG + N+ A++V I D W
Sbjct: 1013 GEDYMTIDGSVQSGKRDAVQTSFNDPLNLRARLMLISTRAGSLGTNMVAANRVIIFDACW 1072
Query: 729 NPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRIIELQEKKASMIHATINQDEAAINR 788
NPS + QS RV+R GQ +PV I RF + ++E RI + Q K S + DEA I R
Sbjct: 1073 NPSHDTQSLFRVYRFGQTKPVYIYRFIAQGTMEERIYKRQVTKESTSMRVV--DEAQIQR 1130
Score = 64.7 bits (156), Expect = 5e-10
Identities = 56/223 (25%), Positives = 103/223 (46%), Gaps = 41/223 (18%)
Query: 194 LLPFQLEGLHWLQQ-------QEESDYNGGVLADEMGMGKTIQTIALLMSDITR------ 240
L P Q G+ ++ + +++ +GG+LA MG+GKT+Q I L + +
Sbjct: 463 LKPHQAHGIQFMYDCAFESLDRLDTEGSGGILAHCMGLGKTLQVITFLHTVLMHEKIGEK 522
Query: 241 -KPSLVVAPTVALMQW-------------------KNEIEQHT---NKKLSVYMYHGANR 277
K LVV P ++ W NE++ + +++ ++ +H +
Sbjct: 523 CKRVLVVVPKNVIINWFKEFQKWLVDNDEELDTIDVNELDSYKTIEDRRRALKAWHSSKT 582
Query: 278 TNNLGDFKDVDVILTTYAVLESVYRKQVYGFKRKAGTVKE--KSLLHSINFYRVILDEAH 335
+ + D+ ILT V + +K+ R+ KE + L + V+ DEAH
Sbjct: 583 PSVMIIGYDLFRILT---VEDDPKKKKPKNRNRRLEKAKEDFRKYLQNPGPDMVVCDEAH 639
Query: 336 NIKDRTSNTAKAVNSLQTKKRWCLSGTPLQNRIGEMYSLIRFL 378
+K+ S +K + + TK+R CL+GTPLQN + E + ++ F+
Sbjct: 640 KLKNDDSALSKCMVKILTKRRICLTGTPLQNNLMEYHCMVNFV 682
>At5g07810 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 1178
Score = 65.5 bits (158), Expect = 3e-10
Identities = 37/135 (27%), Positives = 68/135 (49%)
Query: 644 DKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQTIKYFMENIHCEVFL 703
D+ + K +VF+ +LD ++ + G V++ G+ P R ++ F + ++ +
Sbjct: 539 DRSSTKMVVFAHHHKVLDGIQEFICDKGIGFVRIDGTTLPRDRQLAVQSFQFSSEVKIAI 598
Query: 704 VSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESR 763
+ ++AGGV L+ A V L+ PS+ Q+ DR HR GQ V + FC +D+++
Sbjct: 599 IGVEAGGVGLDFSAAQNVVFLELPKTPSLLLQAEDRAHRRGQTSAVNVYIFCAKDTMDES 658
Query: 764 IIELQEKKASMIHAT 778
+ KK I +T
Sbjct: 659 NWQNLNKKLHRISST 673
>SPCC1620.14c [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2
and related ATPases (DNA/RNA helicase superfamily)
Length = 430
Score = 65.1 bits (157), Expect = 4e-10
Identities = 32/74 (43%), Positives = 44/74 (59%)
Query: 701 VFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSI 760
+F++S +AGG+ LNL A V I D WNP + Q+ DR HRIGQ + V+I R E SI
Sbjct: 8 IFMLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQTKEVRILRLITEKSI 67
Query: 761 ESRIIELQEKKASM 774
E I+ + K +
Sbjct: 68 EENILSRAQYKLDL 81
>Hs21071060 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 954
Score = 65.1 bits (157), Expect = 4e-10
Identities = 40/149 (26%), Positives = 74/149 (48%), Gaps = 1/149 (0%)
Query: 627 SSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQR 686
+ KI +++E + +L R K +VF+ +LD + L+R Q +++ GS + +R
Sbjct: 706 AEAKIPSVIEYILDLLESGRE-KFLVFAHHKVVLDAITQELERKHVQHIRIDGSTSSAER 764
Query: 687 DQTIKYFMENIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQF 746
+ + F + V ++S+ A + L A V + +WNP V Q+ DRVHRIGQ
Sbjct: 765 EDLCQQFQLSERHAVAVLSITAANMGLTFSSADLVVFAELFWNPGVLIQAEDRVHRIGQT 824
Query: 747 RPVKITRFCIEDSIESRIIELQEKKASMI 775
V I + + + + L ++K ++
Sbjct: 825 SSVGIHYLVAKGTADDYLWPLIQEKIKVL 853
>ECU06g0820 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 556
Score = 65.1 bits (157), Expect = 4e-10
Identities = 36/120 (30%), Positives = 58/120 (48%)
Query: 645 KRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQTIKYFMENIHCEVFLV 704
++ +K +VF T M++ +E +++ GS+ T R +K F EN V L+
Sbjct: 392 EKGMKFVVFCHHTEMMESLEGFFAERNVPMIRIDGSVPSTSRHLLVKKFQENEEVMVALL 451
Query: 705 SLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRI 764
S+ A L L V + +WNP V Q+ DR+HRIGQ V I + +I+ +
Sbjct: 452 SITACSTGLTLTAGRAVVFAELYWNPGVLLQAEDRIHRIGQKSSVDIIYLVAKGTIDEYV 511
Score = 55.1 bits (131), Expect = 4e-07
Identities = 55/197 (27%), Positives = 84/197 (41%), Gaps = 37/197 (18%)
Query: 194 LLPFQLEGLHWLQQQEESDYNGG--VLADEMGMGKTIQTIALLMSDITRKPSLVVAPTVA 251
LLPFQ EG+ E + GG ++AD+MG+GKTIQ +A+ P +++AP
Sbjct: 124 LLPFQREGV------EHALNRGGRMIVADDMGLGKTIQALAVAYYYRAEWPLVIIAPASL 177
Query: 252 LMQWKNEIEQHTNKKLSVYMYHGANRTNNLGDFKDVDVILTTYAVLESVYRKQVYGFKRK 311
L W + + + V R + G ++ + +Y V S G
Sbjct: 178 LEDWADACRRFLGMEAMV-----MRRKEDFGQ----EIGVVSYEVASSHANVLACG---- 224
Query: 312 AGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTK--KRWCLSGTPLQNRIG 369
AG VI DE H +K + KA+ L K + LSGTP +R
Sbjct: 225 AGV--------------VIADECHYLKSLQTKRTKAIVPLLQKVSRALLLSGTPAVSRPL 270
Query: 370 EMYSLIRFLNIEPFTRY 386
E+Y +I ++ F R+
Sbjct: 271 ELYPIISAVDRTIFPRF 287
>CE17477 [R] KOG1016 Predicted DNA helicase DEAD-box superfamily
Length = 1274
Score = 65.1 bits (157), Expect = 4e-10
Identities = 53/207 (25%), Positives = 95/207 (45%), Gaps = 27/207 (13%)
Query: 604 EVDEELFKKQSIVSRLKMGGKWRSSTKI-EALVEELYNL--------RSDKRTIKSIVFS 654
E DEE+ K+ SR+K + K E ++E Y + S + K ++FS
Sbjct: 745 EEDEEVEKE----SRMKYDWTFELFEKYQEGVLENGYKIVISLEILDESTQIGEKILIFS 800
Query: 655 QFTSMLDLVEWRLKRAGFQT--------------VKLQGSMTPTQRDQTIKYFMENIHCE 700
Q + LD++E LK+ + ++L G+ + R++ I F
Sbjct: 801 QNLTALDMLEEILKKRQIRGKDGPGQRWEKNRNYLRLDGTTSGADREKLINRFNSEPGLS 860
Query: 701 VFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSI 760
+FL+S +AG + +NL A++ I+D WNP + Q+ RV+R GQ + + R +++S+
Sbjct: 861 LFLISTRAGSLGINLVSANRCIIIDACWNPCHDAQAVCRVYRYGQQKKTFVYRLIMDNSM 920
Query: 761 ESRIIELQEKKASMIHATINQDEAAIN 787
E I Q K + ++ + N
Sbjct: 921 ERSIFNRQISKHGLQQRVVDDAQVDAN 947
>HsM14149926 [K] KOG0384 Chromodomain-helicase DNA-binding protein
Length = 757
Score = 64.7 bits (156), Expect = 5e-10
Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 1/132 (0%)
Query: 649 KSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQTIKYFME-NIHCEVFLVSLK 707
K ++FSQ LD++E L + + ++ G + R I F + + VFL+ +
Sbjct: 24 KVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTR 83
Query: 708 AGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRIIEL 767
AGG+ +NL A I D WNP + Q+ R HRIGQ + VK+ R +S E + +
Sbjct: 84 AGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDK 143
Query: 768 QEKKASMIHATI 779
K + A +
Sbjct: 144 ASLKLGLDKAVL 155
>At1g48310 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 675
Score = 63.9 bits (154), Expect = 9e-10
Identities = 40/142 (28%), Positives = 70/142 (49%), Gaps = 2/142 (1%)
Query: 630 KIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQT 689
KI A+++ L N+ + K +VF+ SML+ + LK+ +++ GS + R
Sbjct: 507 KIPAVLDYLENVI--EAGCKFLVFAHHQSMLEELHQFLKKKKVGCIRIDGSTPASSRQAL 564
Query: 690 IKYFMENIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPV 749
+ F + + ++S++A GV + L AS V + W P Q+ DR HRIGQ V
Sbjct: 565 VSDFQDKDEIKAAVLSIRAAGVGITLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSV 624
Query: 750 KITRFCIEDSIESRIIELQEKK 771
I D+++ I ++ + K
Sbjct: 625 NIHYLLANDTVDDIIWDVVQSK 646
>7296909 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 701
Score = 62.4 bits (150), Expect = 3e-09
Identities = 91/378 (24%), Positives = 151/378 (39%), Gaps = 79/378 (20%)
Query: 158 KLYAHHS----ELIDVFKKLQESPIRQVERAPQPDGMAIRLLPFQLEGLHWLQQQEESDY 213
K Y H + +++D+ + P R V + +P +A +L+PFQ +G+ + Q+
Sbjct: 208 KPYVHMNGIPKKVLDLCGQPPVVPERSVLASIEPK-LADQLMPFQQDGVCFAIAQKGRI- 265
Query: 214 NGGVLADEMGMGKTIQTIALLMSDITRKPSLVVAPTVALMQWKNEIEQHTNKKLSVYMYH 273
++ DEMG+GKT Q +A+ P LV W I K Y+
Sbjct: 266 ---MICDEMGLGKTYQALAVADYFKDDWPLLVCTTASTRDSWAKHIMDLLPKVPIHYVQV 322
Query: 274 GANRTNNLGDFKDVDVILTTYAVLESVYRKQVYGFKRKAGTVKEKSLLHSINFYRVILDE 333
N +G+ K V++T+Y ++E + + L F +I DE
Sbjct: 323 LNNNQLYVGEAK---VLITSYNMME-----------------RHEDKLMQRKFGFIIFDE 362
Query: 334 AHNIKD---RTSNTAKAVNSLQTKKRWCLSGTPLQNRIGEMYSLI-----RFLNIEPFTR 385
+H +K+ + + TAK + Q K+ LSGTP +R E+++ + +F+N FT
Sbjct: 363 SHTLKNSKAKCTTTAKRLTD-QAKRVVLLSGTPALSRPLELFTQLQMIDGKFMNFMEFTT 421
Query: 386 YYCKQCSCSSENWRFSDYLHCDDCGHVGMQHTNFFNHFMLKNVQKHGIEGPGLQSFQNIQ 445
YC G Q T G + G + + ++
Sbjct: 422 RYCD-----------------------GKQST-------------FGWDANGQSNLEELK 445
Query: 446 TLL-ARIMLRRTKVERADDLGLPPRIVTVRKD---YFNEEEKDLYQSLYSDIKRKYNSYV 501
+L + MLRRTKVE L R V + N E K+ + ++K
Sbjct: 446 VILHLKYMLRRTKVEVLPQLAEKNRETVVLDPALVWTNAETKETLDAFNKELKTAKGRAT 505
Query: 502 EEGVVLNNYANIFTLITR 519
EE ++L YA + TR
Sbjct: 506 EE-ILLRFYARTAEVKTR 522
Score = 59.3 bits (142), Expect = 2e-08
Identities = 37/121 (30%), Positives = 56/121 (45%), Gaps = 1/121 (0%)
Query: 645 KRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQTIKYFMENIHCEVFLV 704
K K I+F+ M+D + L +++ G R ++ F + C+V L+
Sbjct: 533 KEQKKFIIFAHHRVMMDAISDFLSGLKVHYIRIDGQTRSDHRSDSVDTFQKKSSCKVALL 592
Query: 705 SLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIESRI 764
SLKA + L A + + WNPS Q+ R HRIGQ +PV I R+ I + I
Sbjct: 593 SLKACNSGITLTAAEIIVFAELDWNPSTLAQAESRAHRIGQTKPV-ICRYLIAHNTADDI 651
Query: 765 I 765
I
Sbjct: 652 I 652
>Hs20532976 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 293
Score = 62.0 bits (149), Expect = 3e-09
Identities = 35/146 (23%), Positives = 72/146 (48%)
Query: 635 VEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMTPTQRDQTIKYFM 694
V++ + ++K +VF+ SML + + +++ GS++ ++R + F
Sbjct: 74 VKDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGSVSSSERIHLVNQFQ 133
Query: 695 ENIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRF 754
++ V ++S++A G L AS V + +W+P Q+ DR HRIGQ V I
Sbjct: 134 KDPDTRVAILSIQAAGQGLTFTAASHVVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYL 193
Query: 755 CIEDSIESRIIELQEKKASMIHATIN 780
++++ + + +KA + +T+N
Sbjct: 194 IANGTLDTLMWGMLNRKAQVTGSTLN 219
>At1g05480 [L] KOG0390 DNA repair protein SNF2 family
Length = 588
Score = 61.2 bits (147), Expect = 6e-09
Identities = 53/160 (33%), Positives = 78/160 (48%), Gaps = 25/160 (15%)
Query: 614 SIVSRLKMGGKWRSSTKIEALVEELYNLRSD-KRTIKS-----------------IVFSQ 655
S+VSR K+ K R S EAL+ +L +R D +++K+ +VFSQ
Sbjct: 343 SLVSRCKISEKERLSID-EALLAQLKKVRLDPNQSVKTRFLMEFVELCEVIKEKVLVFSQ 401
Query: 656 FTSMLDLVEWRLK-----RAGFQTVKLQGSMTPTQRDQTIKYFME-NIHCEVFLVSLKAG 709
+ L L+ L G + + + G + QR I F + +VFL S KA
Sbjct: 402 YIDPLKLIMKHLVSRFKWNPGEEVLYMHGKLEQKQRQTLINEFNDPKSKAKVFLASTKAC 461
Query: 710 GVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPV 749
++L AS+V +LD WNP+VE Q+ R +RIGQ R V
Sbjct: 462 SEGISLVGASRVILLDVVWNPAVERQAISRAYRIGQKRIV 501
>Hs20538502 [R] KOG1016 Predicted DNA helicase DEAD-box superfamily
Length = 1359
Score = 60.8 bits (146), Expect = 8e-09
Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 20/159 (12%)
Query: 649 KSIVFSQFTSMLDLVEWRLKRA------------------GFQTVKLQGSMTPTQRDQTI 690
K +VFSQ S L L+E L + +L GS +R++ I
Sbjct: 631 KILVFSQSLSTLALIEEFLGKREVPCPPGTEGQGAQKWVRNISYFRLDGSTPAFERERLI 690
Query: 691 KYFME--NIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRP 748
F + N+ +FL+S +AG + +NL A++V + D WNP + Q+ RV+R GQ +P
Sbjct: 691 NQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYGQKKP 750
Query: 749 VKITRFCIEDSIESRIIELQEKKASMIHATINQDEAAIN 787
I R + ++E +I + Q K M ++ +N
Sbjct: 751 CYIYRLVADYTLEKKIYDRQISKQGMSDRVVDDLNPMLN 789
>7293730 [R] KOG0383 Predicted helicase
Length = 884
Score = 60.5 bits (145), Expect = 1e-08
Identities = 48/188 (25%), Positives = 84/188 (44%), Gaps = 43/188 (22%)
Query: 188 DGMAIRLLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLMS----DITRKPS 243
+G ++L P+Q+EG++WL+ + +LADEMG+GKTIQT+ L S R P
Sbjct: 715 EGTGMQLHPYQIEGINWLRYSWGQGIDT-ILADEMGLGKTIQTVTFLYSLYKEGHCRGPF 773
Query: 244 LVVAPTVALMQWKNEIE-----------------QHTNKKLSVYMYHGANRTNNLGDFKD 286
LV P L+ W+ E E + ++ + GA R + + +
Sbjct: 774 LVAVPLSTLVNWEREFELWAPDFYCITYIGDKDSRAVIRENELSFEEGAIRGSKVSRLRT 833
Query: 287 V----DVILTTYAVLESVYRKQVYGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTS 342
+V+LT+Y ++ + + L SI++ +++DEAH +K S
Sbjct: 834 TQYKFNVLLTSYELIS-----------------MDAACLGSIDWAVLVVDEAHRLKSNQS 876
Query: 343 NTAKAVNS 350
+ +S
Sbjct: 877 KKSSTSSS 884
>At2g21450 [L] KOG0390 DNA repair protein SNF2 family
Length = 816
Score = 60.1 bits (144), Expect = 1e-08
Identities = 44/134 (32%), Positives = 66/134 (48%), Gaps = 11/134 (8%)
Query: 649 KSIVFSQFTSMLDLVE--------WRLKRAGFQTVKLQGSMTPTQRDQTIKYFMENIHCE 700
K +VFSQ+ + +E WRL G + + G + QR+ +++ F ++ +
Sbjct: 638 KLLVFSQYIVPIKTLERLMSSMKGWRL---GKEMFTITGDSSNEQREWSMERFNNSLEAK 694
Query: 701 VFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSI 760
VF S+KA G ++L AS+V ILD NPSV Q+ R +R GQ R V + DS
Sbjct: 695 VFFGSIKACGEGISLVGASRVLILDVHLNPSVTQQAVARAYRPGQKRKVYAYKLVAADSP 754
Query: 761 ESRIIELQEKKASM 774
E E +K M
Sbjct: 755 EEENYETCTRKEMM 768
Score = 52.0 bits (123), Expect = 4e-06
Identities = 42/186 (22%), Positives = 84/186 (44%), Gaps = 6/186 (3%)
Query: 196 PFQLEGLHWLQQQEESDYNGG-VLADEMGMGKTIQTIALLMSDITRKPS---LVVAPTVA 251
P Q EG +L +D GG +LA G GKT I+ L S + P LVV P
Sbjct: 267 PHQTEGFRFLCNNLAADEPGGCILAHAPGSGKTFLLISFLQSFMAMDPQARPLVVLPKGI 326
Query: 252 LMQWKNEIEQHTNKKLSVYMYHGANRTNNLGDFKDVDVILTTYAVLESVYRK--QVYGFK 309
+ WK E +K+ + ++ + K + + ++L Y++ ++
Sbjct: 327 IESWKREFTLWEVEKIPLLDFYSVKAESRKQQLKVLGQWIKERSILFLGYQQFTRIICDD 386
Query: 310 RKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGTPLQNRIG 369
++ L+ +ILDE H +++ + ++ ++T+++ L+GT QN +
Sbjct: 387 NFEAASEDCKLILLEKPTLLILDEGHTSRNKETYMLSSLARVKTRRKVVLTGTLFQNNVE 446
Query: 370 EMYSLI 375
E+++++
Sbjct: 447 EVFNIL 452
>At3g24340 [L] KOG0390 DNA repair protein SNF2 family
Length = 1132
Score = 59.3 bits (142), Expect = 2e-08
Identities = 47/148 (31%), Positives = 73/148 (48%), Gaps = 9/148 (6%)
Query: 649 KSIVFSQFTSMLDLVEWRLKRA-----GFQTVKLQGSMTPTQRDQTIKYFME-NIHCEVF 702
K +V+SQ+ L L+ +L G Q + + G + R I F + + +V
Sbjct: 945 KVLVYSQYIDTLKLIMEQLIAECDWTEGEQILLMHGKVEQRDRQHMIDNFNKPDSGSKVL 1004
Query: 703 LVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSIES 762
L S KA ++L AS+V ILD WNPSVE Q+ R RIGQ R V I ++D+ E
Sbjct: 1005 LASTKACSEGISLVGASRVVILDVVWNPSVESQAISRAFRIGQKRAVFIYHLMVKDTSEW 1064
Query: 763 RIIELQEKK---ASMIHATINQDEAAIN 787
Q +K + ++ ++ N+ + IN
Sbjct: 1065 NKYCKQSEKHRISELVFSSTNEKDKPIN 1092
>Hs17437081 [B] KOG0389 SNF2 family DNA-dependent ATPase
Length = 619
Score = 58.9 bits (141), Expect = 3e-08
Identities = 41/119 (34%), Positives = 59/119 (49%), Gaps = 11/119 (9%)
Query: 191 AIRLLPFQLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIAL---LMSDITRKPSLVVA 247
++ L P+Q GL+WL + NG +LADEMG+GKTIQ IA L + P L+V
Sbjct: 494 SLSLKPYQKVGLNWLALVHKHGLNG-ILADEMGLGKTIQAIAFLAYLYQEGNNGPHLIVV 552
Query: 248 PTVALMQWKNEIEQHTNKKLSVYMYHGAN------RTNNLGDFKDVDVILTTYAVLESV 300
P + W E+ L V Y+G+ R N ++D +VI+T V +V
Sbjct: 553 PASTIDNWLREVNLWC-PTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTDITVRSAV 610
>7291744 [R] KOG1016 Predicted DNA helicase DEAD-box superfamily
Length = 1534
Score = 58.5 bits (140), Expect = 4e-08
Identities = 56/235 (23%), Positives = 103/235 (43%), Gaps = 43/235 (18%)
Query: 184 APQPDGMAIRLLPFQLEGLHWL--------QQQEESDYNGGVLADEMGMGKTIQTIA--- 232
APQ +A + P Q+ G+ +L ++ +S G +LA MG+GKT+Q ++
Sbjct: 377 APQ---IAKVIKPHQIGGVRFLYDNIIESTRRYNKSSGFGCILAHSMGLGKTLQVVSFCD 433
Query: 233 LLMSDITRKPSLVVAPTVALMQWKNE----IEQHTN------KKLSVYMYHGANRTNN-- 280
+ + + K L V P L W +E I +++ + +++ + +T
Sbjct: 434 IFLRHTSAKTVLCVMPINTLQNWLSEFNMWIPRYSTDSNVRPRNFDIFVLNDQQKTLTAR 493
Query: 281 ----LGDFKDVDVILTTYAVLESVYRKQVYGFKRKAGTVKEKSLLHSINFYR-------- 328
L D V+L Y + + K V KRK ++ + S +
Sbjct: 494 AKVILNWVHDGGVLLIGYELFRLLALKLVKTRKRKGSVIRPDGMDSSSDLMNLVYEALVK 553
Query: 329 -----VILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGTPLQNRIGEMYSLIRFL 378
VI DE H IK+ + + A+ ++T++R L+G PLQN + E + ++ F+
Sbjct: 554 PGPDLVICDEGHRIKNSHAGISLALKEIRTRRRIVLTGYPLQNNLLEYWCMVDFV 608
>CE18078 [KL] KOG1001 Helicase-like transcription factor HLTF/DNA helicase
RAD5 DEAD-box superfamily
Length = 946
Score = 55.5 bits (132), Expect = 3e-07
Identities = 46/202 (22%), Positives = 88/202 (42%), Gaps = 33/202 (16%)
Query: 198 QLEGLHWLQQQEESDYNGGVLADEMGMGKTIQTIALLM------SDITRKPSLVVAPTVA 251
Q E + ++++E+ D GG++ + Q I + +K +L+V +
Sbjct: 237 QKEMMASMEKREDGDDQGGIVTVATNDRQIDQVIIAYILKQREQGTSRKKVNLIVGTPMW 296
Query: 252 LMQWKNEIEQH------TNKKLSVYMYHGANRTNNLGDFKDVDVILTTYAVLESVYRKQV 305
+ WK + ++ + L++ ++ ++ N + D+++TTY L
Sbjct: 297 MKSWKLQFDEFIKAGLLNDNDLTISYFYNRTKSRNSNELARNDIVITTYDTL-------- 348
Query: 306 YGFKRKAGTVKEKSLLHSINFYRVILDEAHNIKDRTSNTAKAVNSLQTKKRWCLSGTPLQ 365
K++A + ++ + R+IL EA+ I D + +A+ LQ K RWCL+ +P Q
Sbjct: 349 ---KKEANL----PIFKAVKWERIILYEANKISDMNTVRFQAICQLQAKYRWCLTESPKQ 401
Query: 366 NRIGEMYSLIRFLNIEPFTRYY 387
SL FL E F Y
Sbjct: 402 Q------SLSCFLKQESFGNGY 417
>At2g16390 [L] KOG0390 DNA repair protein SNF2 family
Length = 888
Score = 51.2 bits (121), Expect = 6e-06
Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 11/121 (9%)
Query: 649 KSIVFSQFTSMLDLVE--------WRLKRAGFQTVKLQGSMTPTQRDQTIKYFMENIHCE 700
K +VFSQ+ L +E W+L G + L G+ + QR+ +++ F + +
Sbjct: 712 KLLVFSQYLIPLKFLERLAALAKGWKL---GKEVFVLTGNTSSEQREWSMETFNSSPDAK 768
Query: 701 VFLVSLKAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQFRPVKITRFCIEDSI 760
+F S+KA G ++L AS++ ILD NPSV Q+ R R GQ + V R S
Sbjct: 769 IFFGSIKACGEGISLVGASRILILDVPLNPSVTRQAIGRAFRPGQKKMVHAYRLIAGSSP 828
Query: 761 E 761
E
Sbjct: 829 E 829
>CE27689 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 689
Score = 50.8 bits (120), Expect = 8e-06
Identities = 31/135 (22%), Positives = 65/135 (47%), Gaps = 2/135 (1%)
Query: 611 KKQSIVSRLKMGGKWRSSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRA 670
K +S++ + G +++ E ++E + + R K ++F+ +LD ++ + +
Sbjct: 458 KHESLLEFYSLTGIVKAAAVCEHILENYFYPDAPPR--KVLIFAHHQIVLDTIQVEVNKR 515
Query: 671 GFQTVKLQGSMTPTQRDQTIKYFMENIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNP 730
++++ G +R F + + V ++S+ A GV + L AS V + +NP
Sbjct: 516 KLGSIRIDGKTPSHRRTALCDSFQTDDNIRVAVLSITAAGVGITLTAASVVVFAEIHFNP 575
Query: 731 SVEWQSGDRVHRIGQ 745
Q+ DR HR+GQ
Sbjct: 576 GYLVQAEDRAHRVGQ 590
>CE27688 [B] KOG1000 Chromatin remodeling protein HARP/SMARCAL1 DEAD-box
superfamily
Length = 687
Score = 50.8 bits (120), Expect = 8e-06
Identities = 31/135 (22%), Positives = 65/135 (47%), Gaps = 2/135 (1%)
Query: 611 KKQSIVSRLKMGGKWRSSTKIEALVEELYNLRSDKRTIKSIVFSQFTSMLDLVEWRLKRA 670
K +S++ + G +++ E ++E + + R K ++F+ +LD ++ + +
Sbjct: 456 KHESLLEFYSLTGIVKAAAVCEHILENYFYPDAPPR--KVLIFAHHQIVLDTIQVEVNKR 513
Query: 671 GFQTVKLQGSMTPTQRDQTIKYFMENIHCEVFLVSLKAGGVALNLCEASQVFILDPWWNP 730
++++ G +R F + + V ++S+ A GV + L AS V + +NP
Sbjct: 514 KLGSIRIDGKTPSHRRTALCDSFQTDDNIRVAVLSITAAGVGITLTAASVVVFAEIHFNP 573
Query: 731 SVEWQSGDRVHRIGQ 745
Q+ DR HR+GQ
Sbjct: 574 GYLVQAEDRAHRVGQ 588
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.319 0.135 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,672,953
Number of Sequences: 60738
Number of extensions: 1957813
Number of successful extensions: 7084
Number of sequences better than 1.0e-05: 157
Number of HSP's better than 0.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 6236
Number of HSP's gapped (non-prelim): 463
length of query: 800
length of database: 30,389,216
effective HSP length: 115
effective length of query: 685
effective length of database: 23,404,346
effective search space: 16031977010
effective search space used: 16031977010
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)