ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII2401 good C KOG1575 Energy production and conversion Voltage-gated shaker-like K+ channel, subunit beta/KCNAB
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII2401 838901 837876 -342
(342 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YPR127w [C] KOG1575 Voltage-gated shaker-like K+ channel subunit... 323 2e-88
SPAC9E9.11 [C] KOG1575 Voltage-gated shaker-like K+ channel subu... 175 1e-43
SPCC1281.04 [C] KOG1575 Voltage-gated shaker-like K+ channel sub... 167 3e-41
SPAC3A11.11c [C] KOG1575 Voltage-gated shaker-like K+ channel su... 127 3e-29
At1g10810 [C] KOG1575 Voltage-gated shaker-like K+ channel subun... 101 1e-21
At1g60680 [C] KOG1575 Voltage-gated shaker-like K+ channel subun... 99 7e-21
At1g60690 [C] KOG1575 Voltage-gated shaker-like K+ channel subun... 99 9e-21
SPAC1F7.12 [C] KOG1575 Voltage-gated shaker-like K+ channel subu... 96 8e-20
At1g60730 [C] KOG1575 Voltage-gated shaker-like K+ channel subun... 88 2e-17
At1g60750 [C] KOG1575 Voltage-gated shaker-like K+ channel subun... 84 3e-16
At1g60710 [C] KOG1575 Voltage-gated shaker-like K+ channel subun... 70 4e-12
At5g53580 [C] KOG1575 Voltage-gated shaker-like K+ channel subun... 63 7e-10
>YPR127w [C] KOG1575 Voltage-gated shaker-like K+ channel subunit beta/KCNAB
Length = 345
Score = 323 bits (828), Expect = 2e-88
Identities = 169/337 (50%), Positives = 227/337 (67%), Gaps = 10/337 (2%)
Query: 12 LNNVALGYGLMSFTWRAEPIAPEAASKTFKKVLEFTGDK--KALFNVGEFYGEPLSNYKL 69
++ + GYGLMS TWRAEPI A + +V+E + ++ KA FNVGEFYG N
Sbjct: 10 IHKLDTGYGLMSLTWRAEPIPQSQAFEAMHRVVELSRERGHKAFFNVGEFYGPDFINLSY 69
Query: 70 LQSYFDKYPEDREKVIISAKGAVDLQTLSPAGDAKSVSASIENTLKVFNGYVDIYEPARL 129
+ +F KYP+ R+ V+IS KG D TL+P G V S++N++ GY+DI+E AR+
Sbjct: 70 VHDFFAKYPDLRKDVVISCKGGADNATLTPRGSHDDVVQSVKNSVSAIGGYIDIFEVARI 129
Query: 130 DLELIKKTGESVFPRETFDTIVEYVKKGKIGGISLSEVTAEQIRAIHKEYGEYLVCVEVE 189
D L K GE V+P E+F+ + E + +G IGGISLSEV EQIRAIHK++G++L CVEVE
Sbjct: 130 DTSLCTK-GE-VYPYESFEALAEMISEGVIGGISLSEVNEEQIRAIHKDWGKFLTCVEVE 187
Query: 190 LSMFSAEILSNGIVDTCNELGLPIVAYSPLGRGLLTGALAKSSDIPAGDFRIQLKRFQDD 249
LS+FS +IL NGI TC ELGL I+ YSPLGRGLLTG L ++DIP GDFR LKRF D+
Sbjct: 188 LSLFSNDILHNGIAKTCAELGLSIICYSPLGRGLLTGQLKSNADIPEGDFRKSLKRFSDE 247
Query: 250 AFAHNKSLVEFLENEIIAKRSDN--VTLPQVAIGWIRAISK--NYPNTKIIPIPSGTTVD 305
+ N +LV FL+ EI+ KR N +TL Q+A+GW++ +K Y K IPIPSG+++
Sbjct: 248 SLKKNLTLVRFLQEEIVDKRPQNNSITLAQLALGWVKHWNKVPEYSGAKFIPIPSGSSIS 307
Query: 306 KVTSNY--SFIELSDEELAKIDKFLQSFKTVGGRYEM 340
KV N+ +L+D+E I+K+L +F TVG RYEM
Sbjct: 308 KVNENFDEQKTKLTDQEFNAINKYLTTFHTVGDRYEM 344
>SPAC9E9.11 [C] KOG1575 Voltage-gated shaker-like K+ channel subunit beta/KCNAB
Length = 333
Score = 175 bits (443), Expect = 1e-43
Identities = 118/332 (35%), Positives = 177/332 (52%), Gaps = 30/332 (9%)
Query: 17 LGYGLMSFTWRAEPIAPEAASKTFKKVLEFTGDKKALFNVGEFYG--EPLSNYKLLQSYF 74
+G+GLM TW+ + E A + L + ++ GEFYG P SN LL YF
Sbjct: 12 IGFGLMGLTWKPKQTPDEEAFEVMNYALSQGSN---YWDAGEFYGVDPPTSNLDLLARYF 68
Query: 75 DKYPEDREKVIISAKGAVDLQTLSPAGDAKSVSASIENTLKVFNGY--VDIYEPARLDLE 132
+KYPE+ KV +S KG +D +TL P G+ VS S+EN + G +D+++ AR+D
Sbjct: 69 EKYPENANKVFLSVKGGLDFKTLVPDGNPDFVSKSVENVIAHLRGTKKLDLFQCARVDPN 128
Query: 133 LIKKTGESVFPRETFDTIVEYVKKGKIGGISLSEVTAEQIRAIHKEYGEYLVCVEVELSM 192
+ +T T T+ +V GKI + LSEV+AE I+ H + VEVE S+
Sbjct: 129 VPIET--------TMKTLKGFVDSGKISCVGLSEVSAETIKRAHAVVP--IAAVEVEYSL 178
Query: 193 FSAEILSNGIVDTCNELGLPIVAYSPLGRGLLTGALAKSSDI----PAGDFRIQLKRFQD 248
FS +I +NGI+D C +L +PI+AYSP RGLLTG + D+ + F L RF
Sbjct: 179 FSRDIETNGIMDICRKLSIPIIAYSPFCRGLLTGRIKTVEDLKEFAKSFPFLEYLDRFSP 238
Query: 249 DAFAHNKSLVEFLENEIIAKRSDNVTLPQVAIGWIRAISKNYPNTKIIPIPSGTTVDKVT 308
D FA N ++ +E +AK+ +T+P+ ++ +I A N +IPIP T+V +
Sbjct: 239 DVFAKNLPFLQAVEQ--LAKKF-GMTMPEFSLLFIMASG----NGLVIPIPGSTSVSRTK 291
Query: 309 SNYSFI--ELSDEELAKIDKFLQSFKTVGGRY 338
SN + + LS E+ + + L + G RY
Sbjct: 292 SNLNALNKSLSPEQFKEAKEVLSKYPIYGLRY 323
>SPCC1281.04 [C] KOG1575 Voltage-gated shaker-like K+ channel subunit beta/KCNAB
Length = 333
Score = 167 bits (422), Expect = 3e-41
Identities = 114/332 (34%), Positives = 173/332 (51%), Gaps = 30/332 (9%)
Query: 17 LGYGLMSFTWRAEPIAPEAASKTFKKVLEFTGDKKALFNVGEFYG--EPLSNYKLLQSYF 74
+G GLM TWR + + A + L + +N GEFYG P +N LL YF
Sbjct: 12 IGLGLMGLTWRPKQTPIKQAFELMNYALSQGSN---YWNAGEFYGINPPTANLDLLADYF 68
Query: 75 DKYPEDREKVIISAKGAVDLQTLSPAGDAKSVSASIENTLKVFNG--YVDIYEPARLDLE 132
+KYP++ +KV +S KG D +TL+P GD +SV+ S++N L G +D+++ AR+D +
Sbjct: 69 EKYPKNADKVFLSVKGGTDFKTLAPHGDPESVTKSVKNALTRLRGKKKLDLFQCARVDHK 128
Query: 133 LIKKTGESVFPRETFDTIVEYVKKGKIGGISLSEVTAEQIRAIHKEYGEYLVCVEVELSM 192
+ +T T + +V G+I + LSE +AE I+ + VE E S+
Sbjct: 129 VPIET--------TMKALKAFVDSGEISCVGLSEASAESIKRALAIVP--IAAVETEYSL 178
Query: 193 FSAEILSNGIVDTCNELGLPIVAYSPLGRGLLTGALAKSSD----IPAGDFRIQLKRFQD 248
FS +I NGI+DTC +L +PI+AY+P GLLTG + + D I A F + +F
Sbjct: 179 FSRDIEKNGILDTCTQLSIPIIAYAPFCHGLLTGRVKTAEDLKDFIKAFPFLRNMDKFNP 238
Query: 249 DAFAHNKSLVEFLENEIIAKRSDNVTLPQVAIGWIRAISKNYPNTKIIPIPSGTTVDKVT 308
F N + FL+ + +++P+ A+ +I A K IIPIP TTV +
Sbjct: 239 KVFEKN---IPFLKAVEQLAQKFGMSMPEFALNFIIANGKG----MIIPIPGSTTVQRAE 291
Query: 309 SNYSFIE--LSDEELAKIDKFLQSFKTVGGRY 338
SN S ++ LS E+L + K L + G RY
Sbjct: 292 SNLSALKKSLSSEQLEEAKKVLDKHQIFGLRY 323
>SPAC3A11.11c [C] KOG1575 Voltage-gated shaker-like K+ channel subunit beta/KCNAB
Length = 334
Score = 127 bits (318), Expect = 3e-29
Identities = 95/315 (30%), Positives = 154/315 (48%), Gaps = 35/315 (11%)
Query: 17 LGYGLMSFTWRAEPIAPEAASKTFKKVLEFTGDKKALFNVGEFYG--EPLSNYKLLQSYF 74
+G GL S TW P+ E A + L + ++ GEFYG EPL+N +LL YF
Sbjct: 12 IGLGLKSLTWTENPVPDEEAFRIMNYALSHGC---SFWDAGEFYGLSEPLANLQLLSRYF 68
Query: 75 DKYPEDREKVIISAKGAVDLQTLSPAGDAKSVSASIENTLKVFNGY--VDIYEPARLDLE 132
K+P+ +KV +S KGA D +T G + ++ SI+ + +D+Y+ A +D +
Sbjct: 69 QKFPDSIDKVFLSVKGAFDPETHRVHGTRECITKSIKTVRETLKKVKTIDLYQCAAIDPD 128
Query: 133 LIKKTGESVFPRETFDTIVEYVKKGKIGGISLSEVTAEQIRAIHKEYGEYLVCVEVELSM 192
+ ET + E+V G I I L E + E+I+ H + +EV SM
Sbjct: 129 TPIE--------ETMACLKEFVDSGDIRCIGLCEPSVEEIKRAHSVVR--IAAIEVHYSM 178
Query: 193 FSAEILSNGIVDTCNELGLPIVAYSPLGRGLLTGALAKSSDIPAGDFRIQL-KRFQDDAF 251
EI NG+ C++L +P+VA+SPL GLLTG + +DI Q ++ F
Sbjct: 179 LFREIEYNGVKKLCHDLSIPLVAHSPLAHGLLTGRVTTMADIENLKKHHQCNEQPPSSTF 238
Query: 252 AHNKSLVEFLENEIIAKRSDNVTLPQVAIGWIRAISKNYPNTKIIPIPSGTTVD------ 305
+ ++ L+ +A + D ++L ++A+ +I + + +I+PIPS T+ D
Sbjct: 239 SSTLPCIQALKE--LASKYD-MSLAELALSFILSAGRG----RILPIPSATSYDLIEASL 291
Query: 306 ----KVTSNYSFIEL 316
KV Y F E+
Sbjct: 292 GSFSKVLDTYQFAEV 306
>At1g10810 [C] KOG1575 Voltage-gated shaker-like K+ channel subunit beta/KCNAB
Length = 344
Score = 101 bits (252), Expect = 1e-21
Identities = 88/279 (31%), Positives = 135/279 (47%), Gaps = 29/279 (10%)
Query: 53 LFNVGEFYGEPLSNYKLLQSYFDKYPEDREKVIISAKGAVDL--QTLSPAGDAKSVSASI 110
L + + YG + L Q+ D REKV ++ K + L Q L GD V A+
Sbjct: 56 LLDTSDIYGPETNELLLGQALKDGM---REKVELATKFGLLLKDQKLGYRGDPAYVRAAC 112
Query: 111 ENTLKVFN-GYVDIYEPARLDLELIKKTGESVFPRE-TFDTIVEYVKKGKIGGISLSEVT 168
E +L+ +D+Y R+D + P E T + + V++GKI I LSE
Sbjct: 113 EASLRRLGVSCIDLYYQHRID---------TTVPIEVTIGELKKLVEEGKIKYIGLSEAC 163
Query: 169 AEQIRAIHKEYGEYLVCVEVELSMFSAEILSNGIVDTCNELGLPIVAYSPLGRGLLTGAL 228
A IR H + L V++E S++S ++ I+ TC ELG+ IVAYSPLG G
Sbjct: 164 ASTIRRAHAVHP--LTAVQLEWSLWSRDV-EEDIIPTCRELGIGIVAYSPLGLGFFAAGP 220
Query: 229 AKSSDIPAGDFRIQLKRFQDDAFAHNKSLVEFLENEIIAKRSDNVTLPQVAIGWIRAISK 288
+ GD+R L RFQ + HNK L E + N + K+S T Q+A+ W+
Sbjct: 221 KFIESMDNGDYRKGLPRFQQENLDHNKILYEKV-NAMAEKKS--CTPAQLALAWV----- 272
Query: 289 NYPNTKIIPIPSGTTVDKVTSNYS--FIELSDEELAKID 325
++ + PIP + + + N ++LS EE+A++D
Sbjct: 273 HHQGNDVCPIPGTSKIKNLNQNIGALSVKLSIEEMAELD 311
>At1g60680 [C] KOG1575 Voltage-gated shaker-like K+ channel subunit beta/KCNAB
Length = 340
Score = 99.4 bits (246), Expect = 7e-21
Identities = 92/337 (27%), Positives = 148/337 (43%), Gaps = 29/337 (8%)
Query: 9 SQLLNNVALGYGLMSFTWRAEPIAPEAASKTFKKVLEFTGDKKALFNVGEFYGEPLSNYK 68
SQ L A G G M+ + R AP+ + + F+ + YG +
Sbjct: 5 SQGLEVSAQGLGCMALSARYG--APKPETDAIALLHHAINSGVTFFDTSDMYGPETNELL 62
Query: 69 LLQSYFDKYPEDREKVIISAKGAVDLQTLSPAGDAKSVSASIENTLKVFN-GYVDIYEPA 127
L ++ D E E V+ + GD + V A+ E +LK + +D+Y
Sbjct: 63 LGKALKDGVKEKVELATKFGFFIVEGEISEVRGDPEYVRAACEASLKRLDIACIDLYYQH 122
Query: 128 RLDLELIKKTGESVFPRE-TFDTIVEYVKKGKIGGISLSEVTAEQIRAIHKEYGEYLVCV 186
R+D + P E T + + V++GKI I LSE +A IR H + + V
Sbjct: 123 RIDTRV---------PIEITMRELKKLVEEGKIKYIGLSEASASTIRRAHAVHP--ITAV 171
Query: 187 EVELSMFSAEILSNGIVDTCNELGLPIVAYSPLGRGLLTGALAKSSDIPAGDFR---IQL 243
++E S++S + I+ C ELG+ IVAYSPLGRG L + ++ DFR L
Sbjct: 172 QIEWSLWSRDA-EEDIIPICRELGIGIVAYSPLGRGFLAAGPKLAENLENDDFRKATTTL 230
Query: 244 KRFQDDAFAHNKSLVEFLENEIIAKRSDNVTLPQVAIGWIRAISKNYPNTKIIPIPSGTT 303
RFQ + HNK L E + T Q+A+ W+ ++ + PIP T
Sbjct: 231 PRFQQENVDHNKILFEKVS---AMAEKKGCTPAQLALAWV-----HHQGDDVCPIPGTTK 282
Query: 304 VDKVTSNYS--FIELSDEELAKIDKFLQSFKTVGGRY 338
++ + N ++L+ EE++++D + G RY
Sbjct: 283 IENLNQNIRALSVKLTPEEISELDSLAKPESVKGERY 319
>At1g60690 [C] KOG1575 Voltage-gated shaker-like K+ channel subunit beta/KCNAB
Length = 345
Score = 99.0 bits (245), Expect = 9e-21
Identities = 92/336 (27%), Positives = 147/336 (43%), Gaps = 31/336 (9%)
Query: 9 SQLLNNVALGYGLMSFTWRAEPIAPEAASKTFKKVLEFTGDKKALFNVGEFYGEPLSNYK 68
SQ L A G G M T PE + +G + + YG +
Sbjct: 14 SQGLEVSAQGLGCMGLTGHYGASKPETEAIALIHHAIHSG--VTFLDTSDMYGPETNEIL 71
Query: 69 LLQSYFDKYPEDREKVIISAKGAVDLQ--TLSPAGDAKSVSASIENTLKVFN-GYVDIYE 125
L ++ D REKV ++ K + GD V A+ E +LK + +D+Y
Sbjct: 72 LGKALKDGV---REKVELATKFGISYAEGNREIKGDPAYVRAACEASLKRLDVTCIDLYY 128
Query: 126 PARLDLELIKKTGESVFPRE-TFDTIVEYVKKGKIGGISLSEVTAEQIRAIHKEYGEYLV 184
R+D + P E T + + +++GKI I LSE +A IR H + +
Sbjct: 129 QHRIDTRV---------PIEITMGELKKLIEEGKIKYIGLSEASASTIRRAHTVHP--IT 177
Query: 185 CVEVELSMFSAEILSNGIVDTCNELGLPIVAYSPLGRGLLTGALAKSSDIPAGDFRIQLK 244
V++E S+++ ++ IV TC ELG+ IV+YSPLGRG ++ DFR L
Sbjct: 178 AVQLEWSLWTRDV-EEEIVPTCRELGIGIVSYSPLGRGFFASGPKLVENLDNNDFRKALP 236
Query: 245 RFQDDAFAHNKSLVEFLENEIIAKRSDNVTLPQVAIGWIRAISKNYPNTKIIPIPSGTTV 304
RFQ + HNK L E + T Q+A+ W+ ++ + PIP T +
Sbjct: 237 RFQQENLDHNKILYEKVS---AMSEKKGCTPAQLALAWV-----HHQGDDVCPIPGTTKI 288
Query: 305 DKVTSNYS--FIELSDEELAKIDKFLQSFKTVGGRY 338
+ + N ++L+ EE+++++ Q G RY
Sbjct: 289 ENLNQNIRALSVKLTPEEMSELETIAQPESVKGERY 324
>SPAC1F7.12 [C] KOG1575 Voltage-gated shaker-like K+ channel subunit beta/KCNAB
Length = 340
Score = 95.9 bits (237), Expect = 8e-20
Identities = 67/189 (35%), Positives = 96/189 (50%), Gaps = 14/189 (7%)
Query: 154 VKKGKIGGISLSEVTAEQIRAIHKEYGEYLVCVEVELSMFSAEILSN--GIVDTCNELGL 211
V+ GKI I LSE +A IR Y + V+VE S FS EI G++ C E +
Sbjct: 145 VEAGKIRYIGLSECSANTIRRAAAVYP--VSAVQVEYSPFSLEIERPEIGVMKACRENNI 202
Query: 212 PIVAYSPLGRGLLTGALAKSSDIPAGDFRIQLKRFQDDAFAHNKSLVEFLENEIIAKRSD 271
IV Y+PLGRG LTGA D P GDFR + R+Q + F N LV +E A +
Sbjct: 203 TIVCYAPLGRGFLTGAYKSPDDFPEGDFRRKAPRYQKENFYKNLELVTKIEKIATA---N 259
Query: 272 NVTLPQVAIGWIRAISKNYPNTKIIPIPSGTTVDKVTSNYSF--IELSDEELAKIDKFLQ 329
N+T Q+++ W+ A I+PIP V + N+ ++LSD + +I +
Sbjct: 260 NITPGQLSLAWLLA-----QGDDILPIPGTKRVKYLEENFGALKVKLSDATVKEIREACD 314
Query: 330 SFKTVGGRY 338
+ + +G RY
Sbjct: 315 NAEVIGARY 323
>At1g60730 [C] KOG1575 Voltage-gated shaker-like K+ channel subunit beta/KCNAB
Length = 342
Score = 87.8 bits (216), Expect = 2e-17
Identities = 73/255 (28%), Positives = 121/255 (46%), Gaps = 29/255 (11%)
Query: 81 REKVIISAKGAVDLQT--LSPAGDAKSVSASIENTL-KVFNGYVDIYEPARLDLELIKKT 137
REKV ++ K + + GD V A+ E +L +V +D+Y R+D +
Sbjct: 81 REKVELATKYGIRYAEGKVEFKGDPAYVRAACEASLMRVDVACIDLYYQHRIDTRV---- 136
Query: 138 GESVFPRE-TFDTIVEYVKKGKIGGISLSEVTAEQIRAIHKEYGEYLVCVEVELSMFSAE 196
P E T + + V++GKI I LSE +A IR H + + +++E S++S +
Sbjct: 137 -----PIEITIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHP--ITALQIEWSLWSRD 189
Query: 197 ILSNGIVDTCNELGLPIVAYSPLGRGLLTGALAKSSDIPAGDFRIQLKRFQDDAFAHNKS 256
+ I+ TC ELG+ IVAYSPLGRG ++ D L RFQ + HNK
Sbjct: 190 V-EEDIIPTCRELGIGIVAYSPLGRGFFASGPKLVENLDNND---TLPRFQQENLDHNKI 245
Query: 257 LVEFLENEIIAKRSDNVTLPQVAIGWIRAISKNYPNTKIIPIPSGTTVDKVTSNYS--FI 314
L E + T Q+A+ W+ ++ + PIP T ++ + N +
Sbjct: 246 LFEKVS---AMSEKKGCTPAQLALAWV-----HHQGDDVCPIPGTTKIENLNQNIGALSV 297
Query: 315 ELSDEELAKIDKFLQ 329
+L+ EE+++++ Q
Sbjct: 298 KLTPEEMSELESLAQ 312
>At1g60750 [C] KOG1575 Voltage-gated shaker-like K+ channel subunit beta/KCNAB
Length = 330
Score = 84.0 bits (206), Expect = 3e-16
Identities = 71/243 (29%), Positives = 114/243 (46%), Gaps = 41/243 (16%)
Query: 101 GDAKSVSASIENTLKVFN-GYVDIYEPARLDLELIKKTGESVFPRE-TFDTIVEYVKKGK 158
GD + V + E +LK +D+Y R+D L P E T + + V++GK
Sbjct: 105 GDPEYVRIACEASLKRLGVTCIDLYYQHRIDTTL---------PIEITIGELKKLVEEGK 155
Query: 159 IGGISLSEVTAEQIRAIHKEYGEYLVCVEVELSMFSAEILSNGIVDTCNELGLPIVAYSP 218
I I LSE +A IR H + + V++E S++S ++ I+ TC ELG+ IVAYSP
Sbjct: 156 IKYIGLSEASASTIRRAHAVHP--ITAVQIEWSLWSRDV-EEDIIPTCRELGIGIVAYSP 212
Query: 219 LGRGLLTGALAKSSDIPAGDFRIQLKRFQDDAFAHNKSLVEFLENEIIAKRSDNVTLPQV 278
LGRG L L RFQ + +NK L E ++ K + T Q+
Sbjct: 213 LGRGFL-----------------GLPRFQQENLENNKILYEKVQAMATKK---SCTPAQL 252
Query: 279 AIGWIRAISKNYPNTKIIPIPSGTTVDKVTSNYS--FIELSDEELAKIDKFLQSFKTVGG 336
A+ W+ ++ + PIP + + + N ++L+ EE+ +++ Q G
Sbjct: 253 ALAWV-----HHQGDDVCPIPGTSKIQNLNQNIGALSVKLTPEEMVELEAIAQPDFVKGE 307
Query: 337 RYE 339
RY+
Sbjct: 308 RYD 310
>At1g60710 [C] KOG1575 Voltage-gated shaker-like K+ channel subunit beta/KCNAB
Length = 287
Score = 70.1 bits (170), Expect = 4e-12
Identities = 68/236 (28%), Positives = 107/236 (44%), Gaps = 21/236 (8%)
Query: 9 SQLLNNVALGYGLMSFTWRAEPIAPEAASKTFKKVLEFTGDKKALFNVGEFYGEPLSNYK 68
SQ L A G G M + A AP+ ++ + L + + YG +
Sbjct: 5 SQGLEVSAQGLGCMGLS--AFYGAPKPENEAIALIHHAIHSGVTLLDTSDIYGPETNEVL 62
Query: 69 LLQSYFDKYPEDREKVIISAKGAVDLQT--LSPAGDAKSVSASIENTLKVFN-GYVDIYE 125
L ++ D REKV ++ K + GD + V A+ E +LK + +D+Y
Sbjct: 63 LGKALKDGV---REKVELATKFGISYAEGKREVRGDPEYVRAACEASLKRLDIACIDLYY 119
Query: 126 PARLDLELIKKTGESVFPRE-TFDTIVEYVKKGKIGGISLSEVTAEQIRAIHKEYGEYLV 184
R+D + P E T + + V++GKI I LSE +A IR H + +
Sbjct: 120 QHRVDTRV---------PIEITMGELKKLVEEGKIKYIGLSEASASTIRRAHAVHP--IT 168
Query: 185 CVEVELSMFSAEILSNGIVDTCNELGLPIVAYSPLGRGLLTGALAKSSDIPAGDFR 240
V++E S+++ ++ I+ TC ELG+ IVAYSPLGRG ++ DFR
Sbjct: 169 AVQIEWSLWTRDV-EEEIIPTCRELGIGIVAYSPLGRGFFASGPKLVENLEKDDFR 223
>At5g53580 [C] KOG1575 Voltage-gated shaker-like K+ channel subunit beta/KCNAB
Length = 324
Score = 62.8 bits (151), Expect = 7e-10
Identities = 54/184 (29%), Positives = 90/184 (48%), Gaps = 20/184 (10%)
Query: 147 FDTIVEYVKKGKIGGISLSEVTAEQIRAIH---KEYGEYLVCVEVELSMFSAEILSNGIV 203
+D +V+ +KG + + +S +Q+ IH K G L +V+ S+ S I
Sbjct: 138 WDGLVQMYEKGLVRAVGVSNYGPQQLVKIHDYLKTRGVPLCSAQVQFSLLSMGKEQLEIK 197
Query: 204 DTCNELGLPIVAYSPLGRGLLTGALAKSSDIPAGDFRIQLKRFQDDAFAHNKSLVEFLEN 263
C+ELG+ +++YSPLG G+LTG + SS +P G + ++ +L +
Sbjct: 198 SICDELGIRLISYSPLGLGMLTGKYS-SSKLPTGPRSLLFRQILPGLEPLLLAL-----S 251
Query: 264 EIIAKRSDNVTLPQVAIGWIRAISKNYPNTKIIPIPSGTTVDKVTSNYSFI--ELSDEEL 321
EI KR T+PQVAI W I K +PIP +V V N + +L+++E
Sbjct: 252 EIAKKRGK--TMPQVAINW--CICKG-----TVPIPGIKSVRHVEDNLGALGWKLTNDEQ 302
Query: 322 AKID 325
+++
Sbjct: 303 LQLE 306
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.136 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,639,133
Number of Sequences: 60738
Number of extensions: 826468
Number of successful extensions: 2389
Number of sequences better than 1.0e-05: 12
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2355
Number of HSP's gapped (non-prelim): 12
length of query: 342
length of database: 30,389,216
effective HSP length: 107
effective length of query: 235
effective length of database: 23,890,250
effective search space: 5614208750
effective search space used: 5614208750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)