ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII2708 good J KOG1741 Translation, ribosomal structure and biogenesis Mitochondrial/chloroplast ribosomal protein S14/S29
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactII2708 938099 937755 -115 
         (115 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YPR166c [J] KOG1741 Mitochondrial/chloroplast ribosomal protein ...   175   1e-44
SPAC23H3.07c [J] KOG1741 Mitochondrial/chloroplast ribosomal pro...    76   9e-15
At2g34520_2 [J] KOG1741 Mitochondrial/chloroplast ribosomal prot...    57   4e-09
Hs11559927 [J] KOG1741 Mitochondrial/chloroplast ribosomal prote...    55   1e-08
CE02309 [J] KOG1741 Mitochondrial/chloroplast ribosomal protein ...    53   6e-08
7293584_1 [J] KOG1741 Mitochondrial/chloroplast ribosomal protei...    48   2e-06

>YPR166c [J] KOG1741 Mitochondrial/chloroplast ribosomal protein S14/S29
          Length = 115

 Score =  175 bits (443), Expect = 1e-44
 Identities = 80/115 (69%), Positives = 98/115 (84%)

Query: 1   MGGFRFPIKTKLPSTYLNARVIRDNFKRQQVADNEVTVKALKFIARNTTLPPRSRMEAQL 60
           MG FRFPIKTKLP  ++NAR++RDNFKRQQ  +NE+ VK+LKFIARN  LP + R+EAQL
Sbjct: 1   MGNFRFPIKTKLPPGFINARILRDNFKRQQFKENEILVKSLKFIARNMNLPTKLRLEAQL 60

Query: 61  QLSVMPNYTRMTQIKNRCIETGHSRSVLSDFRLCRSQFRELARKGDLPGVKKGVW 115
           +L+ +PNY R TQIKNRC+++GH+R VLSDFRLCR QFRE A KG+LPGVKKG+W
Sbjct: 61  KLNALPNYMRSTQIKNRCVDSGHARFVLSDFRLCRYQFRENALKGNLPGVKKGIW 115


>SPAC23H3.07c [J] KOG1741 Mitochondrial/chloroplast ribosomal protein S14/S29
          Length = 105

 Score = 75.9 bits (185), Expect = 9e-15
 Identities = 41/100 (41%), Positives = 56/100 (56%)

Query: 16  YLNARVIRDNFKRQQVADNEVTVKALKFIARNTTLPPRSRMEAQLQLSVMPNYTRMTQIK 75
           +L  +  RD   R+  A++EV  ++  +I RN  LP R R+EA+ ++  +P     T+IK
Sbjct: 6   HLKHKAFRDLLCRRLFAEHEVERQSNLYIYRNPELPLRVRLEAKKRIEALPTNAHPTKIK 65

Query: 76  NRCIETGHSRSVLSDFRLCRSQFRELARKGDLPGVKKGVW 115
           NRCIETG  R V   F L R  FR  A    LPGV+K  W
Sbjct: 66  NRCIETGRGRGVFRAFGLARFPFRLKALANKLPGVRKASW 105


>At2g34520_2 [J] KOG1741 Mitochondrial/chloroplast ribosomal protein S14/S29
          Length = 70

 Score = 57.0 bits (136), Expect = 4e-09
 Identities = 29/70 (41%), Positives = 41/70 (58%)

Query: 46  RNTTLPPRSRMEAQLQLSVMPNYTRMTQIKNRCIETGHSRSVLSDFRLCRSQFRELARKG 105
           ++  LP   R + + +LS +P  +   +I+NRC+ TG SRSV   FR+ R  FR LA KG
Sbjct: 1   KDPDLPSEMRDKNRYKLSKLPRNSAFARIRNRCVFTGRSRSVTELFRVSRIVFRGLASKG 60

Query: 106 DLPGVKKGVW 115
            L G+ K  W
Sbjct: 61  ALMGITKSSW 70


>Hs11559927 [J] KOG1741 Mitochondrial/chloroplast ribosomal protein S14/S29
          Length = 128

 Score = 55.5 bits (132), Expect = 1e-08
 Identities = 33/105 (31%), Positives = 57/105 (53%), Gaps = 6/105 (5%)

Query: 14  STYLNARVIRDNFKRQ---QVADNEVTVKALKFIARNTTLPPRSRMEAQLQLSVMPNYTR 70
           S Y++ R+ RD  +R+   + AD  + + +L+   +NT LP   +  A  +++ +P  + 
Sbjct: 27  SHYVDWRMWRDVKRRKMAYEYADERLRINSLR---KNTILPKILQDVADEEIAALPRDSC 83

Query: 71  MTQIKNRCIETGHSRSVLSDFRLCRSQFRELARKGDLPGVKKGVW 115
             +I+NRC+ T   R V   +RL R  FR LA  G L G+++  W
Sbjct: 84  PVRIRNRCVMTSRPRGVKRRWRLSRIVFRHLADHGQLSGIQRATW 128


>CE02309 [J] KOG1741 Mitochondrial/chloroplast ribosomal protein S14/S29
          Length = 103

 Score = 53.1 bits (126), Expect = 6e-08
 Identities = 32/96 (33%), Positives = 45/96 (46%)

Query: 20  RVIRDNFKRQQVADNEVTVKALKFIARNTTLPPRSRMEAQLQLSVMPNYTRMTQIKNRCI 79
           R +RD  +R+Q+ +       LK I  NT LP   R EA  ++     Y     I N C 
Sbjct: 8   RQLRDVKRREQIQEVGADRMRLKAIKFNTILPQAIRDEAAEKMQKARKYDHPRLILNMCQ 67

Query: 80  ETGHSRSVLSDFRLCRSQFRELARKGDLPGVKKGVW 115
            TG  R  +  +RL R  FR  A +  L GV++ +W
Sbjct: 68  FTGRQRGKIKPYRLSRHLFRRFADRSALSGVQRAMW 103


>7293584_1 [J] KOG1741 Mitochondrial/chloroplast ribosomal protein S14/S29
          Length = 232

 Score = 48.1 bits (113), Expect = 2e-06
 Identities = 25/82 (30%), Positives = 43/82 (51%)

Query: 21  VIRDNFKRQQVADNEVTVKALKFIARNTTLPPRSRMEAQLQLSVMPNYTRMTQIKNRCIE 80
           +IRD  +R+ V +N V    +  + +N  LPP  R  A  +++  P  + + +++ RC  
Sbjct: 1   MIRDVKRRKCVKENAVERLRVNSLRKNDILPPELREVADAEIAAFPRDSSLVRVRERCAL 60

Query: 81  TGHSRSVLSDFRLCRSQFRELA 102
           T   R V+  +RL R  +R LA
Sbjct: 61  TSRPRGVVHKYRLSRIVWRHLA 82


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.323    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,214,216
Number of Sequences: 60738
Number of extensions: 194487
Number of successful extensions: 614
Number of sequences better than 1.0e-05: 6
Number of HSP's better than  0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 608
Number of HSP's gapped (non-prelim): 6
length of query: 115
length of database: 30,389,216
effective HSP length: 91
effective length of query: 24
effective length of database: 24,862,058
effective search space: 596689392
effective search space used: 596689392
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)