ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII2723 good K KOG3046 Transcription Transcription factor, subunit of SRB subcomplex of RNA polymerase II
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactII2723 941126  941608 161  
         (161 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YPR168w [K] KOG3046 Transcription factor subunit of SRB subcompl...   199   1e-51
SPBC31F10.09c [K] KOG3046 Transcription factor subunit of SRB su...    75   5e-14
Hs20544486 [K] KOG3046 Transcription factor subunit of SRB subco...    64   7e-11
CE01087 [K] KOG3046 Transcription factor subunit of SRB subcompl...    53   2e-07

>YPR168w [K] KOG3046 Transcription factor subunit of SRB subcomplex of RNA
           polymerase II
          Length = 157

 Score =  199 bits (507), Expect = 1e-51
 Identities = 93/143 (65%), Positives = 121/143 (84%)

Query: 5   NLEKLQTDLVETEQRLAAIIDSFIELGVYVYDFPGTEDSMQGMVTNMQRNVDRMKQLNQQ 64
           N E+LQ +L  T+ ++A+II+SF+ELGV +YDFPGT ++ +GM+TN+QRNVDR+ +LN +
Sbjct: 7   NNEQLQQELATTQDQVASIIESFVELGVSIYDFPGTPEATKGMITNLQRNVDRLYKLNVR 66

Query: 65  ANDPESQLQNFLVPLDVLQYIEDGRNPDVYTREFVEAIRRSNQYQRAKIHGLNKLRDSLA 124
           +NDP+S L    +PL+V+QYIEDGRNPD+YTREFVEAIRRSNQYQR K+HGL +LRDSLA
Sbjct: 67  SNDPQSSLSKVDIPLEVVQYIEDGRNPDIYTREFVEAIRRSNQYQRGKMHGLKQLRDSLA 126

Query: 125 EKIIDELPELQPHVESIIARTSP 147
           +KI+DE PEL+  VE II RTSP
Sbjct: 127 DKIVDEFPELKEPVEDIIKRTSP 149


>SPBC31F10.09c [K] KOG3046 Transcription factor subunit of SRB subcomplex of RNA
           polymerase II
          Length = 138

 Score = 74.7 bits (182), Expect = 5e-14
 Identities = 39/126 (30%), Positives = 70/126 (54%), Gaps = 10/126 (7%)

Query: 19  RLAAIIDSFIELGVYVYDFPGT--EDSMQGMVTNMQRNVDRMKQLNQQANDPESQLQNFL 76
           RL     +F +L + VY+   T   D++   +  + R++  +  ++++ N+        L
Sbjct: 11  RLEDTTQAFYDLALIVYNLEDTTPSDAIPESLDTLIRDLKSLPDISRKVNN--------L 62

Query: 77  VPLDVLQYIEDGRNPDVYTREFVEAIRRSNQYQRAKIHGLNKLRDSLAEKIIDELPELQP 136
           +P DVL+YIE GRNPDVY R+F E +++ NQY   K++ +   + + AE+I    PE+  
Sbjct: 63  IPQDVLEYIEQGRNPDVYARQFSELVQKDNQYVNGKLYAIEGFQKAFAEEIKQAYPEVSS 122

Query: 137 HVESII 142
            V+ I+
Sbjct: 123 VVDKIL 128


>Hs20544486 [K] KOG3046 Transcription factor subunit of SRB subcomplex of RNA
           polymerase II
          Length = 135

 Score = 64.3 bits (155), Expect = 7e-11
 Identities = 39/136 (28%), Positives = 66/136 (47%), Gaps = 16/136 (11%)

Query: 17  EQRLAAIIDSFIELGVYVYDFP-----GTEDSMQGMVTNMQRNVDRMKQLNQQANDPESQ 71
           E+ L   +++  +LG+ V DF      G    +  +VT +Q ++D+ +Q          Q
Sbjct: 9   EEHLEKFVENIRQLGIIVSDFQPSSQAGLNQKLNFIVTGLQ-DIDKCRQ----------Q 57

Query: 72  LQNFLVPLDVLQYIEDGRNPDVYTREFVEAIRRSNQYQRAKIHGLNKLRDSLAEKIIDEL 131
           L +  VPL+V +YI+ GRNP +YT+E +E     N+  + KI  + K +  L +++    
Sbjct: 58  LHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMKKFKSLLIQELSKVF 117

Query: 132 PELQPHVESIIARTSP 147
           PE      SI     P
Sbjct: 118 PEDMAKYRSIRGEDHP 133


>CE01087 [K] KOG3046 Transcription factor subunit of SRB subcomplex of RNA
           polymerase II
          Length = 173

 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 34/141 (24%), Positives = 71/141 (50%), Gaps = 9/141 (6%)

Query: 3   EQNLEKLQTD-LVETEQRLAAIIDSFIELGVYVYDFPGT-EDSMQGMVTNMQRNVDRMKQ 60
           E+   K + D +++ E++L    ++   +G    +F    +D++ G +  + R +  + +
Sbjct: 33  EEERRKQEDDKILQLEKKLEEFQENARFIGDLASNFQTKYQDALNGRIYTLVRGLQDLDR 92

Query: 61  LNQQANDPESQLQNFLVPLDVLQYIEDGRNPDVYTREFVEAIRRSNQYQRAKIHGLNKLR 120
           +    +D +       VPLD+L Y++DG+NP +Y++  +E     N+    KI    K R
Sbjct: 93  MKGTFSDKK-------VPLDLLPYLDDGKNPCLYSKHCMEKTLEKNKAVNGKIEIYKKFR 145

Query: 121 DSLAEKIIDELPELQPHVESI 141
             L ++  +E+P+L  +  SI
Sbjct: 146 AHLMKEFSEEMPDLVMYYRSI 166


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.315    0.134    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,211,143
Number of Sequences: 60738
Number of extensions: 370028
Number of successful extensions: 1053
Number of sequences better than 1.0e-05: 4
Number of HSP's better than  0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1049
Number of HSP's gapped (non-prelim): 4
length of query: 161
length of database: 30,389,216
effective HSP length: 98
effective length of query: 63
effective length of database: 24,436,892
effective search space: 1539524196
effective search space used: 1539524196
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)