ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII2728 suspect: LH R KOG2444 General function prediction only WD40 repeat protein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII2728 941796 943370 525
(525 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YPR169w [R] KOG2444 WD40 repeat protein 397 e-110
SPAC1A6.02 [R] KOG2444 WD40 repeat protein 52 3e-06
>YPR169w [R] KOG2444 WD40 repeat protein
Length = 514
Score = 397 bits (1020), Expect = e-110
Identities = 200/415 (48%), Positives = 276/415 (66%), Gaps = 28/415 (6%)
Query: 6 KAKKRAASLEVLASKSSPILEFV-FDEPLIHVACHPEQPIVVCAIATGHVFCCKYDAKAL 64
K+KK+ +V+ S + PILE + P+ HPE PI++ TGH+ C +YD L
Sbjct: 25 KSKKKT---DVVDSTNLPILELLSLKAPIFQSLLHPELPIIITGFGTGHIVCHRYDPAKL 81
Query: 65 KRILNKNEAKLAALENKDDQKRKRFWKLIKLKAEMDT-------------YXXXXXXXXX 111
+ L++ A KD +K W I+L +++T
Sbjct: 82 QSHLDRRRRIDTATTGKDAKKGVCPW--IRLDIDLETGDLKFVDIEEQQQQKQTGKDEDL 139
Query: 112 XXXXXWKTRRHKGSVRGMSFNNDGSKLYTIGIDNVLKKANSLTGKVMKKVTLPL---SSE 168
WKT+RHKGSVR M F++ G ++++G DNVLKKAN++TGKV+KKV L S E
Sbjct: 140 GVKTLWKTKRHKGSVRAMCFDSKGDNIFSVGSDNVLKKANTMTGKVVKKVNLSSLFNSEE 199
Query: 169 KNH--YTKLVTSKTHPFLLLGDELGNIHVLNNDTLQLQNTIKSIHNGDAINDIFQFVGKS 226
K + +TKL S+THPF+L+GDE GNIHV+N++ L L N+I+SIH GD+INDIF F +S
Sbjct: 200 KKNDKFTKLCASQTHPFILIGDESGNIHVINSENLALSNSIRSIHFGDSINDIFHFDKRS 259
Query: 227 VYKFISLGQTTLAYWDSRESNESDASIPADDLDAKRKVYVSDDQEDEMICGSFVNPEDGD 286
YKFISLGQTTLAY+D R+ + +D K+ +SDDQEDE++CG FV+PE D
Sbjct: 260 AYKFISLGQTTLAYFDVRDKDAKPNVAGNED----GKILISDDQEDEVLCGCFVDPEVAD 315
Query: 287 ILVCGMGEGVLTVWKPKKNDLVDQVTRIPICKNESVDCVISSFQDDNCVYCGCSNGNVYK 346
L+CGMGEG++TVWKP KNDL DQ++RI I K+ES+DC++ + QDDNCV+CGCSNGN+YK
Sbjct: 316 TLLCGMGEGIVTVWKPNKNDLEDQMSRIKISKDESIDCIVPTLQDDNCVWCGCSNGNIYK 375
Query: 347 VNVKLGKVIEIRKHSSIDEVSFIDLDYEYRVLSAGMDKVKLWDIVDEDDDEEGKI 401
VN KLGKV+EIR HS +DEVSF+DLD+EYRV+S G++ +K+W++ +D +E +
Sbjct: 376 VNAKLGKVVEIRNHSELDEVSFVDLDFEYRVVSGGLENIKIWELSSDDVEENASV 430
>SPAC1A6.02 [R] KOG2444 WD40 repeat protein
Length = 146
Score = 51.6 bits (122), Expect = 3e-06
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 117 WKTRRHKGSVRGMSFNNDGSKLYTIGIDNVLKKANSLTGKVMKKVTLPLSSEKNHYTKLV 176
W T+RHK S R +S N G++ ++G D VLK A++ TG+V K + + E + Y+ +
Sbjct: 53 WSTKRHKKSCRNISVNESGTEFISVGSDGVLKIADTSTGRVSSKWIVDKNKEISPYSVVQ 112
Query: 177 TSKTHPFLLLGDELGNIHVLNNDT 200
+ GD+ G + V + T
Sbjct: 113 WIENDMVFATGDDNGCVSVWDKRT 136
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.134 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,245,508
Number of Sequences: 60738
Number of extensions: 1075387
Number of successful extensions: 3606
Number of sequences better than 1.0e-05: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3600
Number of HSP's gapped (non-prelim): 3
length of query: 525
length of database: 30,389,216
effective HSP length: 111
effective length of query: 414
effective length of database: 23,647,298
effective search space: 9789981372
effective search space used: 9789981372
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)