ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII2820 check: MH A KOG0299 RNA processing and modification U3 snoRNP-associated protein (contains WD40 repeats)
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII2820 972464 970764 -567
(567 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YPR137w [A] KOG0299 U3 snoRNP-associated protein (contains WD40 ... 749 0.0
SPAC2E1P5.05 [A] KOG0299 U3 snoRNP-associated protein (contains ... 276 6e-74
Hs4759276 [A] KOG0299 U3 snoRNP-associated protein (contains WD4... 213 6e-55
CE23942 [A] KOG0299 U3 snoRNP-associated protein (contains WD40 ... 167 3e-41
7303128 [A] KOG0299 U3 snoRNP-associated protein (contains WD40 ... 167 4e-41
At4g05410 [A] KOG0299 U3 snoRNP-associated protein (contains WD4... 160 4e-39
At4g21130 [A] KOG0299 U3 snoRNP-associated protein (contains WD4... 134 5e-31
ECU11g1750 [K] KOG0263 Transcription initiation factor TFIID sub... 68 4e-11
At2g41500 [A] KOG0272 U4/U6 small nuclear ribonucleoprotein Prp4... 57 1e-07
Hs4502123_2 [R] KOG4155 FOG: WD40 repeat 56 2e-07
SPAC6B12.15 [T] KOG0279 G protein beta subunit-like protein 55 4e-07
7296108 [I] KOG0301 Phospholipase A2-activating protein (contain... 54 5e-07
SPAC227.12 [A] KOG0272 U4/U6 small nuclear ribonucleoprotein Prp... 54 6e-07
At1g48630 [T] KOG0279 G protein beta subunit-like protein 54 6e-07
YCR084c [R] KOG0266 WD40 repeat-containing protein 54 8e-07
SPAC630.14c [R] KOG0266 WD40 repeat-containing protein 54 8e-07
At5g52820 [S] KOG0271 Notchless-like WD40 repeat-containing protein 54 8e-07
CE05533 [A] KOG0285 Pleiotropic regulator 1 53 1e-06
At5g16750 [A] KOG0319 WD40-repeat-containing subunit of the 18S ... 53 1e-06
At3g21540 [A] KOG0306 WD40-repeat-containing subunit of the 18S ... 53 1e-06
SPBP22H7.07 [A] KOG0285 Pleiotropic regulator 1 52 2e-06
Hs13376751 [R] KOG0266 WD40 repeat-containing protein 52 2e-06
At3g18130 [T] KOG0279 G protein beta subunit-like protein 52 2e-06
7303694 [A] KOG0291 WD40-repeat-containing subunit of the 18S rR... 52 2e-06
Hs21071067 [K] KOG0263 Transcription initiation factor TFIID sub... 52 3e-06
Hs13376840 [R] KOG4155 FOG: WD40 repeat 52 3e-06
YBR198c [K] KOG0263 Transcription initiation factor TFIID subuni... 51 4e-06
7300980 [R] KOG4155 FOG: WD40 repeat 51 4e-06
Hs20127645 [R] KOG0266 WD40 repeat-containing protein 51 5e-06
Hs7657439 [K] KOG0263 Transcription initiation factor TFIID subu... 50 7e-06
Hs22048015 [R] KOG0266 WD40 repeat-containing protein 50 7e-06
At5g25150 [K] KOG0263 Transcription initiation factor TFIID subu... 50 7e-06
7297305 [T] KOG0279 G protein beta subunit-like protein 50 9e-06
>YPR137w [A] KOG0299 U3 snoRNP-associated protein (contains WD40 repeats)
Length = 573
Score = 749 bits (1935), Expect = 0.0
Identities = 377/574 (65%), Positives = 456/574 (78%), Gaps = 17/574 (2%)
Query: 6 TSNVSKKRNRDSVEE----VDEEITDISSDEGDVQDESNDGDEVAEYLESEDEFEGENPA 61
T +KR++ V VDEEITD SS+E + + S++ D LESE+EFEGENPA
Sbjct: 5 TQQKKRKRSKGEVNPSKPTVDEEITDPSSNEDEQLEVSDEEDA----LESEEEFEGENPA 60
Query: 62 DKRRRLAKQYLENLKAEAEDIGDSLATASTEQD----RQTQLEDYNNFDARDLDRDIIAS 117
DKRRRLAKQYLENLK+EA DI A E+D ++ +++YNNFDA DLD+DIIAS
Sbjct: 61 DKRRRLAKQYLENLKSEANDILTDNRNAE-EKDLNNLKERTIDEYNNFDAGDLDKDIIAS 119
Query: 118 RLKQDVAEQQGRIYRWISNKLLIGESRTTFTRVGENNLTCISCYQPSVNKFSHKDVQN-- 175
RLK+DVAEQQGR++R+ +KLLI E++ +FTRVGENNLTCISC+QP +NK++ ++ N
Sbjct: 120 RLKEDVAEQQGRVFRYFGDKLLISEAKQSFTRVGENNLTCISCFQPVLNKYTFEESSNGD 179
Query: 176 KSKDKIFAYTVSKDMQLTKYDVTDFKAXXXXXXXXXXXXXXIPEGKFEYENVTEGHYDEI 235
K+K ++FAYTVSKD+QLTKYD+TDF IP K EYEN TEGHYDEI
Sbjct: 180 KNKGRLFAYTVSKDLQLTKYDITDFSKRPKKLKYAKGGAKYIPTSKHEYENTTEGHYDEI 239
Query: 236 LTVAASPDGKYVVSGGRDRKLIVWSTESLAPVKIIPTKDRRGEVLGLAFKKNSDQLFAAC 295
LTVAASPDGKYVV+GGRDRKLIVWSTESL+PVK+IPTKDRRGEVL LAF+KNSDQL+A+C
Sbjct: 240 LTVAASPDGKYVVTGGRDRKLIVWSTESLSPVKVIPTKDRRGEVLSLAFRKNSDQLYASC 299
Query: 296 ADYKIRTYAINQFSQLEILYGHQDLVIDISALNMERCVTVGSRDRTAMLWKIADESRLTF 355
AD+KIRTY+INQFSQLEILYGH D+V DISAL MERCVTVG+RDRTAMLWKI DE+RLTF
Sbjct: 300 ADFKIRTYSINQFSQLEILYGHHDIVEDISALAMERCVTVGARDRTAMLWKIPDETRLTF 359
Query: 356 RGGDDPERLRKKWLKNQQLSAEGGEDMH--EQTPPHFYGEGSIDCISMVDDSHFVTGSDN 413
RGGD+P++L ++W+K E GE + E P F+ EGSID +SMVDD HF+TGSDN
Sbjct: 360 RGGDEPQKLLRRWMKENAKEGEDGEVKYPDESEAPLFFCEGSIDVVSMVDDFHFITGSDN 419
Query: 414 GNISLWSLSKKKPLFTVRTAHGVVPLVEDKKISGEVSDELRNAQLQGGSIAQPFWITSLY 473
GNI LWSL+KKKP+FT R AHG++P ISGE +ELR QLQG + QPFWITSLY
Sbjct: 420 GNICLWSLAKKKPIFTERIAHGILPEPSFNDISGETDEELRKRQLQGKKLLQPFWITSLY 479
Query: 474 AVPYSDIFISGSWNGTLKVWKINENLRAFELLGDLPNCKGVVTKIQAVESGRTGRETFRI 533
A+PYS++FISGSW+G+LKVWKI++NLR+FELLG+L KGVVTKIQ VESG+ G+E FRI
Sbjct: 480 AIPYSNVFISGSWSGSLKVWKISDNLRSFELLGELSGAKGVVTKIQVVESGKHGKEKFRI 539
Query: 534 LASVSKEHRLGRWISKVPGARNGIFSAVIEQTGF 567
LAS++KEHRLGRWI+ V GARNGI+SAVI+QTGF
Sbjct: 540 LASIAKEHRLGRWIANVSGARNGIYSAVIDQTGF 573
>SPAC2E1P5.05 [A] KOG0299 U3 snoRNP-associated protein (contains WD40 repeats)
Length = 524
Score = 276 bits (706), Expect = 6e-74
Identities = 180/553 (32%), Positives = 288/553 (51%), Gaps = 83/553 (15%)
Query: 2 ARSSTSNVSKKRNR-DSVEEVDEEITDISSDEGDVQDESNDGDEVAEYLESEDEFEGENP 60
ARS+TS K+ + + +E++ ISS+ + + DE+ E E+ED +E
Sbjct: 16 ARSATSKREKENQKLERNGPANEDLASISSES----EFNGFEDEIDE--ENEDTYE--TA 67
Query: 61 ADKRRRLAKQYLENLKAEAEDIGDSLATASTEQDRQTQLEDYNNFDARDLDRDIIASRLK 120
A+KR RLA++YL+ +K E + G FDA+++DR+++ASRLK
Sbjct: 68 AEKRLRLAREYLDEVKNELVEDG--------------------GFDAKEVDRELLASRLK 107
Query: 121 QDVAEQQGRIYRWISNKLLIGESRTTFTRVGENNLTCISCYQPSVNKFSHKDVQNKSKDK 180
+DV E++G++Y ++K+ T G + +P V ++++
Sbjct: 108 EDVLEKKGQMYLDYTSKINPDVKIETAQLRGRH-------MRPLVGVVAYEN-------- 152
Query: 181 IFAYTVSKDMQLTKYDVTDFKAXXXXXXXXXXXXXXIPEG----KFEYENVTEG-HYDEI 235
F Y+ K + K++ K I KF E H EI
Sbjct: 153 -FVYSADKSGLIQKWEALQEKDTENRENDDHEIGKAIKLHFRPIKFSRSRRGENDHVKEI 211
Query: 236 LTVAASPDGKYVVSGGRDRKLIVWSTESLAPVKIIPTKDRRGEVLGLAFKKNSDQLFAAC 295
+A S DG+++V+GG D ++++ + +L P K R V+GLA ++ ++++F+
Sbjct: 212 TCLAISNDGRWIVTGGLDHRIVIRDSVTLEPQHC--WKHHRDAVMGLAMRRGTNEMFSCS 269
Query: 296 ADYKIRTYAINQFSQLEILYGHQDLVIDISALNMERCVTVGSRDRTAMLWKIADESRLTF 355
AD I+ ++++Q S +E L+GHQD++ + AL ERCV+VG RDRT+ LWKI +ES+L F
Sbjct: 270 ADRSIKVWSLDQMSYIETLFGHQDVIFGVDALARERCVSVGGRDRTSRLWKIVEESQLVF 329
Query: 356 RGGDDPERLRKKWLKNQQLSAEGGEDMHEQTPPHFYGEGSIDCISMVDDSHFVTGSDNGN 415
R G + A G Y EGS+DC++M+D+ HFVTGSDNG
Sbjct: 330 RSG------------GTSMKATAG-----------YMEGSVDCVAMIDEDHFVTGSDNGV 366
Query: 416 ISLWSLSKKKPLFTVRTAHGVVPLVEDKKISGEVSDELRNAQLQGGSIAQPFWITSLYAV 475
I+LWS+ +KKPLFT AHG+ P++ + S E S + QP WITSL A+
Sbjct: 367 IALWSVQRKKPLFTYPLAHGLDPILAPGRHSAETSPDPVTIP------PQPRWITSLAAI 420
Query: 476 PYSDIFISGSWNGTLKVWKINENLRAFE--LLGDLPNCKGVVTKIQAVESGRTGRETFRI 533
PYS++F SGSW+G +++WKI E LR+FE + + G + + G+ + R+
Sbjct: 421 PYSNLFASGSWDGNIRLWKIAEGLRSFEPLTIATPLSVYGCINSLSLSLQGKGKQSEVRV 480
Query: 534 LASVSKEHRLGRW 546
A+ +E R+GRW
Sbjct: 481 FAACGRETRVGRW 493
>Hs4759276 [A] KOG0299 U3 snoRNP-associated protein (contains WD40 repeats)
Length = 475
Score = 213 bits (542), Expect = 6e-55
Identities = 153/536 (28%), Positives = 244/536 (44%), Gaps = 123/536 (22%)
Query: 30 SDEGDVQDESNDGDEVAEYL-------ESEDEFEGENPADKRRRLAKQYLENLKAEAEDI 82
S G +E D +E L E E+E E E +K+ RLAK YLE L+ + E+
Sbjct: 39 SKGGGKMNEEISSDSESESLAPRKPEEEEEEELE-ETAQEKKLRLAKLYLEQLRQQEEE- 96
Query: 83 GDSLATASTEQDRQTQLEDYNNFDARDLDRDIIASRLKQDVAEQQGRIYRWISNKLLIGE 142
+AR + D +A RLK+DV EQ+GR+ + ++ ++
Sbjct: 97 ---------------------KAEARAFEEDQVAGRLKEDVLEQRGRLQKLVAKEIQAPA 135
Query: 143 SRTTFTRVGEN-NLTCISCYQPSVNKFSHKDVQNKSKDKIFAYTVSKDMQLTKYDVTDFK 201
S G ++TC+ + D ++ +KD + K+ V +
Sbjct: 136 SADIRVLRGHQLSITCLVV----------------TPDDSAIFSAAKDCSIIKWSVESGR 179
Query: 202 AXXXXXXXXXXXXXXIPEGKFEYENVTEGHYDEILTVAASPDGKYVVSGGRDRKLIVWST 261
IP K E GH +L +A S DGKY+ SG R + +++W
Sbjct: 180 KLHV-----------IPRAKKGAEGKPPGHSSHVLCMAISSDGKYLASGDRSKLILIWEA 228
Query: 262 ESLAPVKIIPTKDRRGEVLGLAFKKNSDQLFAACADYKIRTYAINQFSQLEILYGHQDLV 321
+S + R V GLAF++ + QL++ D ++ + + + S +E L+GHQD V
Sbjct: 229 QSCQ--HLYTFTGHRDAVSGLAFRRGTHQLYSTSHDRSVKVWNVAENSYVETLFGHQDAV 286
Query: 322 IDISALNMERCVTVGSRDRTAMLWKIADESRLTFRGGDDPERLRKKWLKNQQLSAEGGED 381
+ AL+ E CVT G RD T +WKI +ES+L F G
Sbjct: 287 AALDALSRECCVTAGGRDGTVRVWKIPEESQLVFYG------------------------ 322
Query: 382 MHEQTPPHFYGEGSIDCISMVDDSHFVTGSDNGNISLWSLSKKKPLFTVRTAHGVVPLVE 441
+GSIDCI ++++ H V+G+D+G+++LW LSKK+PL R AHG
Sbjct: 323 ----------HQGSIDCIHLINEEHMVSGADDGSVALWGLSKKRPLALQREAHG------ 366
Query: 442 DKKISGEVSDELRNAQLQGGSIAQPFWITSLYAVPYSDIFISGSWNGTLKVWKINENLRA 501
+ GE + QPFWI+S+ A+ +D+ +GS + +++W+ E R
Sbjct: 367 ---LRGE------------PGLEQPFWISSVAALLNTDLVATGSHSSCVRLWQCGEGFRQ 411
Query: 502 FELLGDLPNCKGVVTKIQAVESGRTGRETFRILASVSKEHRLGRWISKVPGARNGI 557
+LL D+P G + ++ SG ++A V +EHRLGRW ++ ARN +
Sbjct: 412 LDLLCDIP-LVGFINSLKFSSSGDF------LVAGVGQEHRLGRW-WRIKEARNSV 459
>CE23942 [A] KOG0299 U3 snoRNP-associated protein (contains WD40 repeats)
Length = 550
Score = 167 bits (424), Expect = 3e-41
Identities = 110/336 (32%), Positives = 163/336 (47%), Gaps = 76/336 (22%)
Query: 225 ENVTEGHYDEILTVAASPDGKYVVSGGRDR--------KLI--VWSTESLAPVKIIPTKD 274
E T HY I TVA SPD K++ SGG D+ K++ +W+ +SL +K +
Sbjct: 189 EEPTNAHYGVIFTVAVSPDQKFIASGGFDQVVKAPKNMKILFQIWNFDSLEHIKDL--SG 246
Query: 275 RRGEVLGLAFKKNSDQLFAACADYKIRTYAINQFSQLEILYGHQDLVIDISALNMERCVT 334
RG + L F+ ++ L++A D ++ + I+Q ++ +YGHQD V I L+ +R T
Sbjct: 247 HRGPIFSLTFQLKTNNLYSASQDRSVKMWDIDQLGLVDTMYGHQDGVQQIGVLSKQRVAT 306
Query: 335 VGSRDRTAMLWKIADESRLTFRGGDDPERLRKKWLKNQQLSAEGGEDMHEQTPPHFYGEG 394
VG RDR+A LWK+ DES+L F G L+N
Sbjct: 307 VGGRDRSARLWKVEDESQLMFSG-----------LQNCV--------------------- 334
Query: 395 SIDCISMVDDSHFVTGSDNGNISLWSLSKKKPLFTVRTAHGVVPLVEDKKISGEVSDELR 454
S+DC++M+++ HF TGS +G+I+LWS KK+ L + AHG
Sbjct: 335 SLDCVAMINEEHFATGSADGSIALWSFWKKRALHVRKQAHGT------------------ 376
Query: 455 NAQLQGGSIAQPFWITSLYAVPYSDIFISGSWNGTLKVWKINENLRAFELLGDLPNCKGV 514
Q GS WI +L +PYSD+ SGS G LK+WKI+EN R + G
Sbjct: 377 ----QNGS---GRWIVALAVLPYSDLLASGSNEGELKLWKISENFRQLTPFFSY-SIPGF 428
Query: 515 VTKIQAVESGRTGRETFRILASVSKEHRLGRWISKV 550
+ I +G++ I+ KEH+ GRW +V
Sbjct: 429 INSINFAPNGKS------IVVGAGKEHKDGRWWMEV 458
>7303128 [A] KOG0299 U3 snoRNP-associated protein (contains WD40 repeats)
Length = 774
Score = 167 bits (423), Expect = 4e-41
Identities = 141/539 (26%), Positives = 216/539 (39%), Gaps = 124/539 (23%)
Query: 9 VSKKRNRDSVEEVDEEITDISSDEGDVQDESNDGDEVAEYLESEDEFEGENPADKRRRLA 68
V KK+ R +E DEEI S DE D D + +A S DE E E P DKR RLA
Sbjct: 46 VPKKQRRP--KEEDEEIA--SDDEEYNSDLGGDDNTLAF---SSDEGEEETPQDKRLRLA 98
Query: 69 KQYLENL-KAEAEDIGDSLATASTEQDRQTQLEDYNNFDARDLDRDIIASRLKQDVAEQQ 127
KQYL + K EAE D S EQ RL+ + +
Sbjct: 99 KQYLSEIEKQEAERAEDRELAQSVEQ------------------------RLQTEYLDSV 134
Query: 128 GRIYRWISNKLLIGESRTTFTRVGENNLTCISCYQPSVNKFSHKDVQNKSKDKIFAYTVS 187
G++ R I+ L ES + C P D F YT +
Sbjct: 135 GKLRRNIAGSLKACESSRILKHKLHHTPICALALSP---------------DGKFLYTGA 179
Query: 188 KDMQLTKYDVTDFKAXXXXXXXXXXXXXXIPEGKFEYENVTEGHYDEILTVAASPDGKYV 247
K L K+ K E + ++++ S D KY+
Sbjct: 180 KSQFLLKWCTETGKVLEKSDVLSHR----------EEPETGKKRRSHVISICLSSDMKYL 229
Query: 248 VSGGRDRKLIVWSTESLAPVKIIPTKDRRGEVLGLAFKKNSDQLFAACADYKIRTYAINQ 307
+ +W +++ +K + K R V GL F+K + L++A D ++ +++++
Sbjct: 230 ALAEGGPHIQIWCPQTMKHIKTL--KGHRDSVAGLVFRKGTHDLYSAAKDRSVKIWSLDE 287
Query: 308 FSQLEILYGHQDLVIDISALNMERCVTVGSRDRTAMLWKIADESRLTFRGGDDPERLRKK 367
+ +E L+GHQ V I AL+ ER +T G D + +WKI +ES+L + G D
Sbjct: 288 MAYVESLFGHQTAVTSIDALSRERAITAGGSDCSLRIWKITEESQLIYNGHKD------- 340
Query: 368 WLKNQQLSAEGGEDMHEQTPPHFYGEGSIDCISMVDDSHFVTGSDNGNISLWSLSKKKPL 427
SI+C+ ++D HFV+G +G I LWS KKKP+
Sbjct: 341 ---------------------------SIECVKYINDEHFVSGGMDGAIGLWSALKKKPI 373
Query: 428 FTVRTAHGVVPLVEDKKISGEVSDELRNAQLQGGSIAQPFWITSLYAVPYSDIFISGSWN 487
T + AHGV G WIT++ V +D+ +GS +
Sbjct: 374 CTTQLAHGV------------------------GENGVANWITAIAVVVNTDLVATGSCD 409
Query: 488 GTLKVWKINENLRAFELLGDLPNCKGVVTKIQAVESGRTGRETFRILASVSKEHRLGRW 546
G +++W+ N N R L+ + + G + + G ++ + +EHRLGRW
Sbjct: 410 GCVRLWQTNPNARKMNLIQSI-SIAGFINGLAFNADGS------KLFVATGQEHRLGRW 461
>At4g05410 [A] KOG0299 U3 snoRNP-associated protein (contains WD40 repeats)
Length = 504
Score = 160 bits (406), Expect = 4e-39
Identities = 136/547 (24%), Positives = 234/547 (41%), Gaps = 83/547 (15%)
Query: 11 KKRNRDSVEEVDEEITDISSDEGDVQDESNDGDEVAEYLESEDEFEGENPADKRRRLAKQ 70
KKR + S ++ D E D ++E DG V +E EDEF E +KR+RLA++
Sbjct: 33 KKRRKVSYDDDDIESVDSDAEENGFTGGDEDGRRVDGEVEDEDEFADETAGEKRKRLAEE 92
Query: 71 YLENLKAEAEDIGDSLATASTEQDRQTQLEDYNNFDARDLDRDIIASRLKQDVAEQQGRI 130
L + E R+ + E N+ D + D + I L Q E GRI
Sbjct: 93 MLNRRR---------------EAMRREREEADNDDDDDEDDDETIKKSLMQKQQEDSGRI 137
Query: 131 YRWISNKLLIGESRTTFTRVGENNLTCISCYQPSVNKFSHKDVQNKSKDKIFAYTVSKDM 190
R I++++ S F+ + ++ + +S S D ++ SKD
Sbjct: 138 RRLIASRVQEPLSTDGFSVIVKHRRSVVSV--------------ALSDDDSRGFSASKDG 183
Query: 191 QLTKYDVTDFKAXXXXXXXXXXXXXXIPEGKFEYENVTEGHYDEILTVAASPDGKYVVSG 250
+ +DV+ K G E + H E L +A S DG+Y+ +G
Sbjct: 184 TIMHWDVSSGKTDKYIWPSDEILKS---HGMKLREPRNKNHSRESLALAVSSDGRYLATG 240
Query: 251 GRDRKLIVWSTESLAPVKIIPTKDRRGEVLGLAFKKNSDQLFAACADYKIRTYAINQFSQ 310
G DR + +W + V+ P R V L F+ + +L++ D ++ + + +
Sbjct: 241 GVDRHVHIWDVRTREHVQAFP--GHRNTVSCLCFRYGTSELYSGSFDRTVKVWNVEDKAF 298
Query: 311 LEILYGHQDLVIDISALNMERCVTVGSRDRTAMLWKIADESRLTFRGGDDPERLRKKWLK 370
+ +GHQ ++ I AL ER +TVG RDRT + K+ + +R+ +R
Sbjct: 299 ITENHGHQGEILAIDALRKERALTVG-RDRTMLYHKVPESTRMIYRA------------- 344
Query: 371 NQQLSAEGGEDMHEQTPPHFYGEGSIDCISMVDDSHFVTGSDNGNISLWSLSKKKPLFTV 430
S++ + D+ +++GSDNG ++LW + KKKP+F
Sbjct: 345 ---------------------PASSLESCCFISDNEYLSGSDNGTVALWGMLKKKPVFVF 383
Query: 431 RTAHGVVPLVEDKKISGEVSDELRNAQLQGGSIAQPFWITSLYAVPYSDIFISGSWNGTL 490
+ AH +P D + + + + + A W+ ++ SD+ SG+ NG +
Sbjct: 384 KNAHQDIP---DGITTNGILENGDHEPVNNNCSANS-WVNAVATSRGSDLAASGAGNGFV 439
Query: 491 KVWKINENLRAFELLGDLPNCKGVVTKIQAVESGRTGRETFRILASVSKEHRLGRWISKV 550
++W + N A L +LP G V + +SG+ ++A V +E R GRW +
Sbjct: 440 RLWAVETN--AIRPLYELP-LTGFVNSLAFAKSGKF------LIAGVGQETRFGRW-GCL 489
Query: 551 PGARNGI 557
A+NG+
Sbjct: 490 KSAQNGV 496
>At4g21130 [A] KOG0299 U3 snoRNP-associated protein (contains WD40 repeats)
Length = 537
Score = 134 bits (336), Expect = 5e-31
Identities = 125/517 (24%), Positives = 222/517 (42%), Gaps = 113/517 (21%)
Query: 10 SKKRNRDSVEEVDEEITDISSDEGDVQDESNDGDEVAEYLESEDEFEGENPADKRRRLAK 69
++KR + + ++ D++I + S+E E G+EV EDEF E +KR+RLA+
Sbjct: 30 TEKRRKFNYDD-DDDIESVESEE-----EGKVGEEV------EDEFAHETVGEKRKRLAE 77
Query: 70 QYLENLKAEAEDIGDSLATASTEQDRQTQLEDYNNFDARDLDRDIIASRLKQDVAEQQGR 129
L + E+ +Q + E+ N D D ++A L Q+ E+ GR
Sbjct: 78 DTLNRI----------------EEAKQREHEEDNEED-DDFRDSLVAKTLMQEQLEKSGR 120
Query: 130 IYRWISNKLLIGESRTTFTRVGENNLTCISCYQPSVNKFSHKDVQNKSKDKIFAYTVSKD 189
+ R +N L + + +++ + I +Q SV + D D ++VSKD
Sbjct: 121 VRR--ANALRVQDLQSS------DKFRVIVKHQHSVTGVALSD------DDSRGFSVSKD 166
Query: 190 MQLTKYDVTDFKAXXXXXXXXXXXXXXIPEGKFEYENVTEGHYDEILTVAASPDGKYVVS 249
+ +DV+ K+ G E+ H + L +A S DG+Y+ +
Sbjct: 167 GTILHWDVSSGKSDEYKWPSDEVLKS---HGLKFQESWYTRHNKQSLALAVSSDGRYLAT 223
Query: 250 GGRDRKLIVWSTESLAPVKIIPTKDRR-------------GEVLGLAFKKNSDQLFAACA 296
GG D + +W + V++ K+ + G V L F++ + +LF+
Sbjct: 224 GGVDCHVHLWDIRTREHVQVNKLKNNQVKDSVHCAFTGHCGIVSSLCFREGTAELFSGSY 283
Query: 297 DYKIRTYAINQFSQLEILYGHQDLVIDISALNMERCVTVGSRDRTAMLWKIA----DESR 352
D + + + +E +GHQ ++ I AL ER ++VG RDRT L+K+ + +R
Sbjct: 284 DGTLSIWNAEHRTYIESCFGHQSELLSIDALGRERVLSVG-RDRTMQLYKVGIVVPESTR 342
Query: 353 LTFRGGDDPERLRKKWLKNQQLSAEGGEDMHEQTPPHFYGEGSIDCISMVDDSHFVTGSD 412
L +R E + +C V+ F++GSD
Sbjct: 343 LIYRA----------------------------------SESNFECCCFVNSDEFLSGSD 368
Query: 413 NGNISLWSLSKKKPLFTVRTAHGVVPLVEDKKISGEVSDELRNAQLQGGSIAQPFWITSL 472
NG+I+LWS+ KKKP+F V AH V+ + ++ + W++S+
Sbjct: 369 NGSIALWSILKKKPVFIVNNAHHVI--ADHDSVNHNCTPACS-------------WVSSV 413
Query: 473 YAVPYSDIFISGSWNGTLKVWKINENLRAFELLGDLP 509
S++ SG+ NG +++W + A + L +LP
Sbjct: 414 AVCRGSELAASGAGNGCVRLWGVESGSSAIQPLYELP 450
>ECU11g1750 [K] KOG0263 Transcription initiation factor TFIID subunit TAF5
(also component of histone acetyltransferase SAGA)
Length = 556
Score = 67.8 bits (164), Expect = 4e-11
Identities = 38/127 (29%), Positives = 63/127 (48%), Gaps = 2/127 (1%)
Query: 227 VTEGHYDEILTVAASPDGKYVVSGGRDRKLIVWSTESLAPVKIIPTKDRRGEVLGLAFKK 286
V + H + V +P+ + SG DR+ IVWS + P ++I + +V + F
Sbjct: 359 VYKAHAFPVWCVDVAPNDYFFASGAGDRQAIVWSVMTSKPERLIISS--LSDVTAVKFHP 416
Query: 287 NSDQLFAACADYKIRTYAINQFSQLEILYGHQDLVIDISALNMERCVTVGSRDRTAMLWK 346
NS LF +D+++R + I+ S + I GH D V + + + + GS+DRT +LW
Sbjct: 417 NSSYLFTGSSDHRVRMHDISTASVVRIFCGHTDTVTCMDVSHCGKFLASGSKDRTVLLWD 476
Query: 347 IADESRL 353
I L
Sbjct: 477 IQSSKLL 483
>At2g41500 [A] KOG0272 U4/U6 small nuclear ribonucleoprotein Prp4 (contains
WD40 repeats)
Length = 554
Score = 56.6 bits (135), Expect = 1e-07
Identities = 37/138 (26%), Positives = 59/138 (41%), Gaps = 13/138 (9%)
Query: 227 VTEGHYDEILTVAASPDGKYVVSGGRDRKLIVWSTESLAPVKIIPTKDRRGEVLGLAFKK 286
V +GH + +V SP+G ++ SGG D + +W + IIP ++ +
Sbjct: 418 VFQGHIKPVFSVNFSPNGYHLASGGEDNQCRIWDLRMRKSLYIIPA---HANLVSQVKYE 474
Query: 287 NSDQLFAACADY--KIRTYAINQFSQLEILYGHQDLVIDISALNMERCVTVGSRDRTAML 344
+ F A A Y K+ ++ FS ++ L GH+ V + C+ S DRT L
Sbjct: 475 PQEGYFLATASYDMKVNIWSGRDFSLVKSLAGHESKVASLDITADSSCIATVSHDRTIKL 534
Query: 345 WKIADESRLTFRGGDDPE 362
W T G DD +
Sbjct: 535 W--------TSSGNDDED 544
>Hs4502123_2 [R] KOG4155 FOG: WD40 repeat
Length = 625
Score = 55.8 bits (133), Expect = 2e-07
Identities = 64/300 (21%), Positives = 115/300 (38%), Gaps = 33/300 (11%)
Query: 229 EGHYDEILTVAASPDGKYVVSGGRDRKLIVWSTESLAPVKIIPTKDRRGEVLGLAFKKNS 288
+ H DE+L A S D +++ + D+K+ +W++ + +++ T D E + NS
Sbjct: 74 KAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMT---GELVHTYDEHSEQVNCCHFTNS 130
Query: 289 DQ---LFAACADYKIRTYAINQFSQLEILYGHQDLVIDISALNMERCVTVGSRDRTAMLW 345
L +D ++ + +NQ ++GH + V ++ + S D T LW
Sbjct: 131 SHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLW 190
Query: 346 KIADES-------RLTFRGGDDPERLRKKWLKNQQLSAEGGEDMHEQTPPHFYGEGS--- 395
+ + F +DP+ + +K SA+G M F
Sbjct: 191 DATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLWNTDSRS 250
Query: 396 --IDC---ISMV-------DDSHFVTGSDNGNISLWSLSKKKPLFTVRTAHGVVPLVEDK 443
DC +S V D S F+T SD+ I LW K V V + ++
Sbjct: 251 KVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQEN 310
Query: 444 KISGEVSDELRNAQLQGGSIAQPFWITSLYA-----VPYSDIFISGSWNGTLKVWKINEN 498
++ D +R QL G Q ++T P+ G NG +++ ++ N
Sbjct: 311 EVMVLAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNN 370
>SPAC6B12.15 [T] KOG0279 G protein beta subunit-like protein
Length = 314
Score = 54.7 bits (130), Expect = 4e-07
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 5/127 (3%)
Query: 230 GHYDEILTVAASPDGKYVVSGGRDRKLIVWSTESLAPVKIIPTKDRRGE-VLGLAFKKNS 288
GH ++L+V+ SPD + VVSG RD+ + +W+ + K T + V + F N
Sbjct: 103 GHTSDVLSVSISPDNRQVVSGSRDKTIKIWNI--IGNCKYTITDGGHSDWVSCVRFSPNP 160
Query: 289 DQLFAACA--DYKIRTYAINQFSQLEILYGHQDLVIDISALNMERCVTVGSRDRTAMLWK 346
D L A D ++ + + FS YGH V ++ G RD T MLW
Sbjct: 161 DNLTFVSAGWDKAVKVWDLETFSLRTSHYGHTGYVSAVTISPDGSLCASGGRDGTLMLWD 220
Query: 347 IADESRL 353
+ + + L
Sbjct: 221 LNESTHL 227
>7296108 [I] KOG0301 Phospholipase A2-activating protein (contains WD40
repeats)
Length = 787
Score = 54.3 bits (129), Expect = 5e-07
Identities = 42/158 (26%), Positives = 72/158 (44%), Gaps = 6/158 (3%)
Query: 230 GHYDEILTVAA---SPDGKY-VVSGGRDRKLIVWSTESLAPVKIIPTKDRRGEVLGLAFK 285
GH ++ VA +P+G+ ++SG RD+ VW ++ + +D + + + F
Sbjct: 16 GHSMDVRAVAVGPPTPEGRQTILSGSRDKSTKVWKPHGNEYLESLTLQDHKNFISYICFL 75
Query: 286 KNSDQLFAACADYKIRTYAINQFSQLEILYGHQDLVIDISALNMERCVTVGSRDRTAMLW 345
++ + A D I Y + F L L GH+ V +SA R + GS D+TA +W
Sbjct: 76 ESERWICTASNDATICIYKQDGFVPLLTLKGHESTVCALSAGLEPRSLISGSWDKTARVW 135
Query: 346 KIADESRLTFRG--GDDPERLRKKWLKNQQLSAEGGED 381
I++ ++F G + LK Q+ GG D
Sbjct: 136 TISEAGDVSFVALEGHEAAVWAVATLKEQRKYVTGGAD 173
>SPAC227.12 [A] KOG0272 U4/U6 small nuclear ribonucleoprotein Prp4 (contains
WD40 repeats)
Length = 462
Score = 53.9 bits (128), Expect = 6e-07
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 4/119 (3%)
Query: 229 EGHYDEILTVAASPDGKYVVSGGRDRKLIVWSTESLAPVKIIPTKDRRGEVLGLAFKKNS 288
EGH + I ++A PDG V SGG D +W S + ++ R +++ +A+ N
Sbjct: 304 EGHSEGIFSIACQPDGSLVSSGGNDAIGRIWDLRSGKSIMVLDEHIR--QIVAMAWSPNG 361
Query: 289 DQLFAACADYKIRTYAINQFSQLEILYGHQDLVIDISAL--NMERCVTVGSRDRTAMLW 345
QL + AD ++ + + + S + H LV D+ + + R + D LW
Sbjct: 362 YQLATSSADDTVKIWDLRKVSLAHTIPAHSSLVSDVRYIESGVNRFIATSGYDGCVKLW 420
>At1g48630 [T] KOG0279 G protein beta subunit-like protein
Length = 326
Score = 53.9 bits (128), Expect = 6e-07
Identities = 54/268 (20%), Positives = 98/268 (36%), Gaps = 49/268 (18%)
Query: 230 GHYDEILTVAASPDGKYVVSGGRDRKLIVWSTESLAPVKIIPTKDRRGEVLGLAFKKNS- 288
GH ++L+VA S D + +VS RDR + +W+T I + V + F N+
Sbjct: 103 GHTKDVLSVAFSTDNRQIVSASRDRTIKLWNTLGECKYTISEADGHKEWVSCVRFSPNTL 162
Query: 289 -DQLFAACADYKIRTYAINQFSQLEILYGHQDLVIDISALNMERCVTVGSRDRTAMLWKI 347
+ +A D ++ + + L GH + ++ G +D +LW +
Sbjct: 163 VPTIVSASWDKTVKVWNLQNCKLRNTLAGHSGYLNTVAVSPDGSLCASGGKDGVILLWDL 222
Query: 348 ADESRLTFRGGDDPERLRKKWLKNQQLSAEGGEDMHEQTPPHFYGEGSIDCISMVDDSHF 407
A+ +L S E G +H C S + ++
Sbjct: 223 AEGKKL--------------------YSLEAGSIIHSL------------CFS--PNRYW 248
Query: 408 VTGSDNGNISLWSLSKKKPLFTVRTAHGVVPLVEDKKISGEVSDELRNAQLQGGSIAQPF 467
+ + +I +W L K +VED K+ + E + G+ +
Sbjct: 249 LCAATENSIRIWDLESKS-------------VVEDLKVDLKAEAEKTDGSTGIGNKTKVI 295
Query: 468 WITSLYAVPYSDIFISGSWNGTLKVWKI 495
+ TSL + SG +G ++VW I
Sbjct: 296 YCTSLNWSADGNTLFSGYTDGVIRVWGI 323
>YCR084c [R] KOG0266 WD40 repeat-containing protein
Length = 713
Score = 53.5 bits (127), Expect = 8e-07
Identities = 32/131 (24%), Positives = 62/131 (46%), Gaps = 18/131 (13%)
Query: 233 DEILTVAASP-DGKYVVSGGRDRKLIVWSTESLAPVKIIPTKDRRG-----EVLGLAFKK 286
D + TVA SP DGKY+ +G DR + VW +E+ V+ + +++ G V + F +
Sbjct: 527 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR 586
Query: 287 NSDQLFAACADYKIRTYAINQFSQ-----------LEILY-GHQDLVIDISALNMERCVT 334
+ + + D ++ + + + E+ Y GH+D V+ ++ + +
Sbjct: 587 DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYIL 646
Query: 335 VGSRDRTAMLW 345
GS+DR + W
Sbjct: 647 SGSKDRGVLFW 657
>SPAC630.14c [R] KOG0266 WD40 repeat-containing protein
Length = 586
Score = 53.5 bits (127), Expect = 8e-07
Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 14/132 (10%)
Query: 230 GHYDEILTVAASPDGKYVVSGGRDRKLIVWSTESLAPVKIIPTKDRRGEVLGLAFKKNSD 289
GH + + +VA SPDGKY+VSG D + +W + ++ + P+ + G + F + D
Sbjct: 456 GHEESVYSVAFSPDGKYLVSGSLDNTIKLWELQCVS--NVAPSMYKEGGICKQTFTGHKD 513
Query: 290 ------------QLFAACADYKIRTYAINQFSQLEILYGHQDLVIDISALNMERCVTVGS 337
+ + D I+ ++ + L GH + VI ++ C GS
Sbjct: 514 FILSVTVSPDGKWIISGSKDRTIQFWSPDSPHSQLTLQGHNNSVISVAVSPNGHCFATGS 573
Query: 338 RDRTAMLWKIAD 349
D A +W D
Sbjct: 574 GDLRARIWSYED 585
Score = 52.8 bits (125), Expect = 1e-06
Identities = 53/216 (24%), Positives = 87/216 (39%), Gaps = 32/216 (14%)
Query: 230 GHYDEILTVAASPDGKYVVSGGRDRKLIVWSTESLAPVKIIPTKDRRGEVLGLAFKKNSD 289
GH EI ++ S DGK +VSG DR + +W E+ I+ T D V + F +
Sbjct: 374 GHEQEIYSLDFSKDGKTLVSGSGDRTVCLWDVEAGEQKLILHTDD---GVTTVMFSPDGQ 430
Query: 290 QLFAACADYKIRTYAINQFSQLEILYGHQDLVIDISALNMERCVTVGSRDRTAMLWKIAD 349
+ A D IR + + + +E L+GH++ V ++ + + GS D T LW++
Sbjct: 431 FIAAGSLDKVIRIWT-SSGTLVEQLHGHEESVYSVAFSPDGKYLVSGSLDNTIKLWELQC 489
Query: 350 ESRL-------------TFRGGDD--------PERLRKKWL----KNQQLSAEGGEDMHE 384
S + TF G D P+ KW+ K++ + + H
Sbjct: 490 VSNVAPSMYKEGGICKQTFTGHKDFILSVTVSPD---GKWIISGSKDRTIQFWSPDSPHS 546
Query: 385 QTPPHFYGEGSIDCISMVDDSHFVTGSDNGNISLWS 420
Q + I + F TGS + +WS
Sbjct: 547 QLTLQGHNNSVISVAVSPNGHCFATGSGDLRARIWS 582
>At5g52820 [S] KOG0271 Notchless-like WD40 repeat-containing protein
Length = 473
Score = 53.5 bits (127), Expect = 8e-07
Identities = 79/344 (22%), Positives = 140/344 (39%), Gaps = 46/344 (13%)
Query: 229 EGHYDEILTVAASPDGKYVVSGGRDRKLIVWSTESLAPVKIIPTKDRRGEVLGLAFK--- 285
+GH + +LTVA SPDGK++VSG + ++ W+ + ++ P + + G++++
Sbjct: 148 KGHKNWVLTVAWSPDGKHLVSGSKSGEICCWNPKK-GELEGSPLTGHKKWITGISWEPVH 206
Query: 286 --KNSDQLFAACADYKIRTYAINQFSQLEILYGHQDLVIDISALNMERCVTVGSRDRTAM 343
+ + D R + I + L GH L + + + GS+D T
Sbjct: 207 LSSPCRRFVTSSKDGDARIWDITLKKSIICLSGH-TLAVTCVKWGGDGIIYTGSQDCTIK 265
Query: 344 LWKIADESRLTFRGGDDPERLRKKWLKNQQLSAE------GGEDMHEQTPPHFYGEGSID 397
+W+ + G W+ + LS E + Q PP+ + +++
Sbjct: 266 MWETTQGKLIRELKG------HGHWINSLALSTEYVLRTGAFDHTGRQYPPNEEKQKALE 319
Query: 398 CISMV---DDSHFVTGSDNGNISLW--SLSK--KKPLFTVRTAHGVVPLVEDKKISGEVS 450
+ V+GSD+ + LW S+SK KK L + V D K S
Sbjct: 320 RYNKTKGDSPERLVSGSDDFTMFLWEPSVSKQPKKRLTGHQQLVNHVYFSPDGKWIASAS 379
Query: 451 DELRNAQLQGGSIAQPFWITSLYAVPY--------SDIFISGSWNGTLKVWKINENLRAF 502
+ ++ +L G Q + + P S + +SGS + TLK+W+I R
Sbjct: 380 FD-KSVRLWNGITGQFVTVFRGHVGPVYQVSWSADSRLLLSGSKDSTLKIWEI----RTK 434
Query: 503 ELLGDLPNCKGVVTKIQAVESGRTGRETFRILASVSKEHRLGRW 546
+L DLP G ++ AV+ G + + S K+ L W
Sbjct: 435 KLKQDLP---GHADEVFAVDWSPDGEK----VVSGGKDRVLKLW 471
>CE05533 [A] KOG0285 Pleiotropic regulator 1
Length = 494
Score = 53.1 bits (126), Expect = 1e-06
Identities = 47/209 (22%), Positives = 78/209 (36%), Gaps = 32/209 (15%)
Query: 230 GHYDEILTVAASPDGKYVVSGGRDRKLIVWSTESLAPVKIIPTKDRRGEVLGLAFKKNSD 289
GH + V SP ++ SGG D+++ W E ++ V L+ + D
Sbjct: 224 GHISSVRAVKVSPRHPFLFSGGEDKQVKCWDLEYNKVIRHY--HGHLSAVQALSVHPSLD 281
Query: 290 QLFAACADYKIRTYAINQFSQLEILYGHQDLVIDISALNMERCVTVGSRDRTAMLWKIAD 349
L D R + + +Q+ GH + V D+ +++ V S D T LW +A
Sbjct: 282 VLVTCARDSTARVWDMRTKAQVHCFAGHTNTVADVVCQSVDPQVITASHDATVRLWDLAA 341
Query: 350 -------------------ESRLTFRGGDDPERLRKKWLKNQQLSAEGGEDMHEQTPPHF 390
RL P+ + K+W GE M + +
Sbjct: 342 GRSMCTLTHHKKSVRALTIHPRLNMFASASPDNI-KQW------KLPKGEFMQNLSGHN- 393
Query: 391 YGEGSIDCISMVDDSHFVTGSDNGNISLW 419
I+ +S DD V+G+DNG++ W
Sbjct: 394 ---AIINTLSSNDDGVVVSGADNGSLCFW 419
>At5g16750 [A] KOG0319 WD40-repeat-containing subunit of the 18S rRNA
processing complex
Length = 876
Score = 53.1 bits (126), Expect = 1e-06
Identities = 53/238 (22%), Positives = 92/238 (38%), Gaps = 28/238 (11%)
Query: 227 VTEGHYDEILTVA-ASPDGKYVVSGGRDRKLIVWSTESLA-----PVK-----IIPTKDR 275
V GH +IL VA A + VSG DR L VWS + ++ P+ ++ D+
Sbjct: 441 VGTGHNGDILAVAFAKKSFSFFVSGSGDRTLKVWSLDGISEDSEEPINLKTRSVVAAHDK 500
Query: 276 RGEVLGLAFKKNSDQLFAACADYKIRTYAINQFSQLEILYGHQDLVIDISALNMERCVTV 335
++ +A +N + D + + + L GH+ + + +++CV
Sbjct: 501 --DINSVAVARNDSLVCTGSEDRTASIWRLPDLVHVVTLKGHKRRIFSVEFSTVDQCVMT 558
Query: 336 GSRDRTAMLWKIADESRLTFRGGDDPERLRKKWLKNQQLSAEGGEDMHEQTPPHFYGEGS 395
S D+T +W I+D S L G LR ++ + G D
Sbjct: 559 ASGDKTVKIWAISDGSCLKTFEGHTSSVLRASFITDGTQFVSCGAD-------------G 605
Query: 396 IDCISMVDDSHFVTGSDNGNISLWSLSKKKPLFTVRTAHG--VVPLVEDKKISGEVSD 451
+ + V+ S + D +W+L+ K + T G V+ L D S + D
Sbjct: 606 LLKLWNVNTSECIATYDQHEDKVWALAVGKKTEMIATGGGDAVINLWHDSTASDKEDD 663
Score = 51.2 bits (121), Expect = 4e-06
Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 4/125 (3%)
Query: 225 ENVTEGHYDEILTVAASPDGKYVVSGGRDRKLIVWSTESLAPVKIIPTKDRRGEVLGLAF 284
++ EG D + +A SPD K + S G R++ VW E+L ++ K G V+G+A
Sbjct: 53 KSTIEGESDTLTALALSPDDKLLFSAGHSRQIRVWDLETLKCIR--SWKGHEGPVMGMAC 110
Query: 285 KKNSDQLFAACADYKIRTYAINQFSQLEILYGHQDLVIDI--SALNMERCVTVGSRDRTA 342
+ L A AD K+ + ++ GH+ +V I + + + GS D T
Sbjct: 111 HASGGLLATAGADRKVLVWDVDGGFCTHYFRGHKGVVSSILFHPDSNKNILISGSDDATV 170
Query: 343 MLWKI 347
+W +
Sbjct: 171 RVWDL 175
>At3g21540 [A] KOG0306 WD40-repeat-containing subunit of the 18S rRNA
processing complex
Length = 949
Score = 52.8 bits (125), Expect = 1e-06
Identities = 42/178 (23%), Positives = 79/178 (43%), Gaps = 8/178 (4%)
Query: 230 GHYDEILTVAASPDGKYVVSGGRDRKLIVWSTESLAPVKIIPTKDRRGEVLGLAFKKNSD 289
GH ++ + S DG+ +V+G +D+ L +W + K I V+G+ F +N+
Sbjct: 573 GHKLPVMCIDISSDGELIVTGSQDKNLKIWGLDFGDCHKSIFAHG--DSVMGVKFVRNTH 630
Query: 290 QLFAACADYKIRTYAINQFSQLEILYGHQDLVIDISALNMERCVTVGSRDRTAMLWKIAD 349
LF+ D ++ + ++F L L GH + ++ N + GS DR+ W ++
Sbjct: 631 YLFSIGKDRLVKYWDADKFEHLLTLEGHHAEIWCLAISNRGDFLVTGSHDRSMRRWDRSE 690
Query: 350 ESRLTFRGGDDPERLRKKWLKNQQLSAEGGEDMHEQTPPH----FYGEGSIDCISMVD 403
E F + +RL + + +A+ E+ P G+ +ID +S D
Sbjct: 691 EP--FFLEEEKEKRLEELFESEIDNAADDRHGPMEEIPEEGVAALAGKKTIDVLSAAD 746
>SPBP22H7.07 [A] KOG0285 Pleiotropic regulator 1
Length = 473
Score = 52.4 bits (124), Expect = 2e-06
Identities = 47/198 (23%), Positives = 77/198 (38%), Gaps = 10/198 (5%)
Query: 230 GHYDEILTVAASPDGKYVVSGGRDRKLIVWSTESLAPVKIIPTKDRRGEVLGLAFKKNSD 289
GH + +A SP Y+ S G D+ + W E+ ++ V L D
Sbjct: 203 GHIATVRGLAVSPRHPYLFSCGEDKMVKCWDLETNKVIRHY--HGHLSGVYALKLHPTLD 260
Query: 290 QLFAACADYKIRTYAINQFSQLEILYGHQDLVIDISALNMERCVTVGSRDRTAMLWKIAD 349
L A D R + + + +L GH+ V ++ + V GS D T LW +A
Sbjct: 261 VLVTAGRDAVARVWDMRTRQNVHVLSGHKSTVASLAVQEFDPQVVTGSMDSTIRLWDLAA 320
Query: 350 ESRLTFRGGDDPERLRKKWLKNQQLSAEGGED--MHEQTPP-----HFYGEGSI-DCISM 401
LT ++ A G D H + P +F G +I + +S+
Sbjct: 321 GKTLTTLTHHKKTVRALSLHPDEFTFASGSSDNIKHWKFPEGAFMGNFEGHNAIVNTLSI 380
Query: 402 VDDSHFVTGSDNGNISLW 419
D+ +G+DNG++ W
Sbjct: 381 NSDNVMFSGADNGSMCFW 398
>Hs13376751 [R] KOG0266 WD40 repeat-containing protein
Length = 392
Score = 52.4 bits (124), Expect = 2e-06
Identities = 45/212 (21%), Positives = 90/212 (42%), Gaps = 17/212 (8%)
Query: 223 EYENVTEGHYDEILTVAASPDGKYVVSGGRDRKLIVWSTESLAPVKIIPTKDRRGEVLGL 282
E V EGH ++ P G V+SGG D +L +WS E + V + K +G +L
Sbjct: 125 ELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCV--VTFKGHKGGILDT 182
Query: 283 AFKKNSDQLFAACADYKIRTYAINQFSQLEILYGHQDLVIDISALNMERCVTVGSRDRTA 342
A + +A D R + + + L +L + ++ + + +GS ++
Sbjct: 183 AIVDRGRNVVSASRDGTARLWDCGRSACLGVLADCGSSINGVAVGAADNSINLGSPEQMP 242
Query: 343 MLWKIADESRLTFRGGDDPERLRKKWLKNQQLSAEGGEDMHEQTPPHFYGEGSIDCISMV 402
++ E+++ +D ++L+ L+++QL F G + +C + +
Sbjct: 243 SEREVGTEAKMLLLARED-KKLQCLGLQSRQLVF------------LFIGSDAFNCCTFL 289
Query: 403 DDSHFVTGSDNGNISLWSLSKKKPLFTVRTAH 434
+ G+ +GNI + L + P V+ H
Sbjct: 290 SGFLLLAGTQDGNI--YQLDVRSPRAPVQVIH 319
>At3g18130 [T] KOG0279 G protein beta subunit-like protein
Length = 326
Score = 52.0 bits (123), Expect = 2e-06
Identities = 54/268 (20%), Positives = 97/268 (36%), Gaps = 49/268 (18%)
Query: 230 GHYDEILTVAASPDGKYVVSGGRDRKLIVWSTESLAPVKIIPTKDRRGEVLGLAFKKNS- 288
GH ++L+VA S D + +VS RDR + +W+T I + V + F N+
Sbjct: 103 GHTKDVLSVAFSTDNRQIVSASRDRTIKLWNTLGECKYTISEGDGHKEWVSCVRFSPNTL 162
Query: 289 -DQLFAACADYKIRTYAINQFSQLEILYGHQDLVIDISALNMERCVTVGSRDRTAMLWKI 347
+ +A D ++ + + L GH + ++ G +D +LW +
Sbjct: 163 VPTIVSASWDKTVKVWNLQNCKLRNSLVGHSGYLNTVAVSPDGSLCASGGKDGVILLWDL 222
Query: 348 ADESRLTFRGGDDPERLRKKWLKNQQLSAEGGEDMHEQTPPHFYGEGSIDCISMVDDSHF 407
A+ +L S E G +H C S + ++
Sbjct: 223 AEGKKL--------------------YSLEAGSIIHSL------------CFS--PNRYW 248
Query: 408 VTGSDNGNISLWSLSKKKPLFTVRTAHGVVPLVEDKKISGEVSDELRNAQLQGGSIAQPF 467
+ + +I +W L K +VED K+ + E + G+ +
Sbjct: 249 LCAATENSIRIWDLESKS-------------VVEDLKVDLKSEAEKNEGGVGTGNQKKVI 295
Query: 468 WITSLYAVPYSDIFISGSWNGTLKVWKI 495
+ TSL SG +G ++VW I
Sbjct: 296 YCTSLNWSADGSTLFSGYTDGVVRVWGI 323
>7303694 [A] KOG0291 WD40-repeat-containing subunit of the 18S rRNA
processing complex
Length = 949
Score = 52.0 bits (123), Expect = 2e-06
Identities = 67/349 (19%), Positives = 138/349 (39%), Gaps = 24/349 (6%)
Query: 223 EYENVTEGHYDEILTVAASPDGKYVVSGGRDRKLIVWSTESLAPVKIIPTKDRRGEVLGL 282
+Y +GH E+ +A S DG+++ +GG D K+ +W+T+S + + V G+
Sbjct: 384 QYIMKQQGHSSEMTCIAYSSDGQFIATGGEDSKVKLWNTQS--SFCFVTFSEHTSGVTGI 441
Query: 283 AFKKNSDQLFAACADYKIRTYAINQFSQLEILYGHQDLVIDISALNME-RCVTVGSRD-R 340
F +N L ++ D +R + +N++ A++ V G +D
Sbjct: 442 QFSRNKKFLVSSSLDGTVRAFDVNRYRNFRTFTSPNPAQFSCVAVDYSGELVVAGGQDVF 501
Query: 341 TAMLWKIADESRLTFRGGDDPERLRKKW--LKNQQLSAEGGEDMHEQTPPHFYGEGSIDC 398
LW + L G + + + + G D + +
Sbjct: 502 DIFLWSVKTGKLLEIISGHEGPVVSIAFSPVATSSTLVSGSWDKTVKIWNCLESNSEHET 561
Query: 399 ISMVDDSHFVTGSDNG-NISLWSLSKKKPLFTVRTAHGVVPLVEDKK--ISGEVSDELRN 455
I V D VT S +G I++ +LS +F +++A G V +E + +G + ++
Sbjct: 562 IDAVSDVTNVTFSPSGEEIAVATLSGNITIFDIKSA-GQVTTIEGRNDLSAGRLETDIIT 620
Query: 456 AQLQGGSIAQPFWITSLYAVPYSDIFISGSWNGTLKVWKINEN--LRAFELLGD--LPNC 511
A+ AQ + +++ + ++ + + ++ + E L+ FE+ + L
Sbjct: 621 ARKN----AQANYFSTIEYSADGECILAAGKSANICIYHVREAILLKKFEITQNHSLDGL 676
Query: 512 KGVVTKIQAVESGRTGRETFRILASVSKEHRLGRWISKVPGARNGIFSA 560
+++ E G L +E GR ++PG + G S+
Sbjct: 677 NDFISRKHLSEFGNMA------LVEEREELEGGRVAIRLPGVQRGDMSS 719
>Hs21071067 [K] KOG0263 Transcription initiation factor TFIID subunit TAF5
(also component of histone acetyltransferase SAGA)
Length = 800
Score = 51.6 bits (122), Expect = 3e-06
Identities = 32/119 (26%), Positives = 54/119 (44%), Gaps = 2/119 (1%)
Query: 229 EGHYDEILTVAASPDGKYVVSGGRDRKLIVWSTESLAPVKIIPTKDRRGEVLGLAFKKNS 288
+GH + SP G Y VSGG DR +W+T+ P++I +V F NS
Sbjct: 582 KGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIF--AGHLADVNCTRFHPNS 639
Query: 289 DQLFAACADYKIRTYAINQFSQLEILYGHQDLVIDISALNMERCVTVGSRDRTAMLWKI 347
+ + AD +R + + + + I GH+ + ++ R + G+ D +LW I
Sbjct: 640 NYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDI 698
>Hs13376840 [R] KOG4155 FOG: WD40 repeat
Length = 305
Score = 51.6 bits (122), Expect = 3e-06
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 6/132 (4%)
Query: 217 IPEGKFEYENVTEGHYDEILTVAASPDGKYVVSGGRDRKLIVWSTESLAPVKIIPTKDRR 276
+ GK EY T G + IL++A SPDGKY+ SG D + ++ +A K++ T +
Sbjct: 135 VESGKKEYSLDTRGKF--ILSIAYSPDGKYLASGAIDGIINIF---DIATGKLLHTLEGH 189
Query: 277 G-EVLGLAFKKNSDQLFAACADYKIRTYAINQFSQLEILYGHQDLVIDISALNMERCVTV 335
+ L F +S L A D I+ Y + + L GH V++++ +
Sbjct: 190 AMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVS 249
Query: 336 GSRDRTAMLWKI 347
S D++ +W +
Sbjct: 250 SSSDKSVKVWDV 261
>YBR198c [K] KOG0263 Transcription initiation factor TFIID subunit TAF5
(also component of histone acetyltransferase SAGA)
Length = 798
Score = 51.2 bits (121), Expect = 4e-06
Identities = 37/154 (24%), Positives = 63/154 (40%), Gaps = 3/154 (1%)
Query: 229 EGHYDEILTVAASPDGKYVVSGGRDRKLIVWSTESLAPVKIIPTKDRRGEVLGLAFKKNS 288
+GH + V+ SP G Y + D+ +WS + + P++I +V ++F N
Sbjct: 564 KGHNHPVWDVSFSPLGHYFATASHDQTARLWSCDHIYPLRIFA--GHLNDVDCVSFHPNG 621
Query: 289 DQLFAACADYKIRTYAINQFSQLEILYGHQDLVIDISALNMERCVTVGSRDRTAMLWKIA 348
+F +D R + ++ + + GH VI I+ R ++ GS D +W I
Sbjct: 622 CYVFTGSSDKTCRMWDVSTGDSVRLFLGHTAPVISIAVCPDGRWLSTGSEDGIINVWDIG 681
Query: 349 DESRL-TFRGGDDPERLRKKWLKNQQLSAEGGED 381
RL RG + K + GG D
Sbjct: 682 TGKRLKQMRGHGKNAIYSLSYSKEGNVLISGGAD 715
>7300980 [R] KOG4155 FOG: WD40 repeat
Length = 743
Score = 51.2 bits (121), Expect = 4e-06
Identities = 33/118 (27%), Positives = 52/118 (43%), Gaps = 2/118 (1%)
Query: 230 GHYDEILTVAASPDGKYVVSGGRDRKLIVWSTESLAPVKIIPTKDRRGEVLGLAFKKNSD 289
GH ++ VA P+G Y+ +G D + +W S +++ D R V LAF +
Sbjct: 579 GHTQDVECVAFHPNGNYIATGSADHSVRLWCATSGKLMRVFA--DCRQAVTQLAFSPDGK 636
Query: 290 QLFAACADYKIRTYAINQFSQLEILYGHQDLVIDISALNMERCVTVGSRDRTAMLWKI 347
L AA + K+R + + +QL L H + +S R + D T LW I
Sbjct: 637 MLAAAGEETKVRIFDLAAGAQLAELKDHSASISSLSWSTHNRHLATACSDGTLRLWDI 694
>Hs20127645 [R] KOG0266 WD40 repeat-containing protein
Length = 548
Score = 50.8 bits (120), Expect = 5e-06
Identities = 60/286 (20%), Positives = 113/286 (38%), Gaps = 40/286 (13%)
Query: 235 ILTVAASPDGKYVVSGGRDRKLIVWSTESLAPVKIIPTKDRRGEVLGLAFKKNSDQLF-- 292
+ ++A S DG+ V+ G D L V+ E + + + +V +AF S Q+
Sbjct: 268 VFSIAVSSDGREVLGGANDGCLYVFDREQNR--RTLQIESHEDDVNAVAFADISSQILFS 325
Query: 293 ----AACADYKIRTYAINQFSQLEILYGHQDLVIDISALNMERCVTVGSRDRTAMLWKIA 348
A C + RT + + L GHQD + I + R + S+D+T LW
Sbjct: 326 GGDDAICKVWDRRTMREDDPKPVGALAGHQDGITFIDSKGDARYLISNSKDQTIKLW--- 382
Query: 349 DESRLTFRGGDDPERLRKKWLKNQQLSAEGGEDMHEQTPPHFYGEGSIDCISMVDDSHFV 408
D R + R G + R Q + + + +Q P + + + + DS +
Sbjct: 383 DIRRFSSREGMEASR--------QAATQQNWDYRWQQVPKKAWRK-----LKLPGDSSLM 429
Query: 409 TGSDNGNISLWSLSKKKPLFT-----VRTAHGVVPLVEDKKISGEVSDELRNAQLQGGSI 463
T +G + + P+ + + + +V +SG + +L N + +
Sbjct: 430 TYRGHGVLHTLIRCRFSPIHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLTNHK---ACV 486
Query: 464 AQPFWITSLYAVPYSDIFISGSWNGTLKVWKINENLRAFELLGDLP 509
W P+ + +S SW+G L++W+ + E D+P
Sbjct: 487 RDVSW------HPFEEKIVSSSWDGNLRLWQYRQGWSTSE--DDMP 524
>Hs7657439 [K] KOG0263 Transcription initiation factor TFIID subunit TAF5
(also component of histone acetyltransferase SAGA)
Length = 589
Score = 50.4 bits (119), Expect = 7e-06
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 2/118 (1%)
Query: 230 GHYDEILTVAASPDGKYVVSGGRDRKLIVWSTESLAPVKIIPTKDRRGEVLGLAFKKNSD 289
GH ++ V P+ Y+ +G D+ + +WS + V++ RG VL LAF N
Sbjct: 424 GHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFT--GHRGPVLSLAFSPNGK 481
Query: 290 QLFAACADYKIRTYAINQFSQLEILYGHQDLVIDISALNMERCVTVGSRDRTAMLWKI 347
L +A D +++ + + + + L GH D + ++ + S D + +W I
Sbjct: 482 YLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSGLIASASMDNSVRVWDI 539
>Hs22048015 [R] KOG0266 WD40 repeat-containing protein
Length = 546
Score = 50.4 bits (119), Expect = 7e-06
Identities = 57/274 (20%), Positives = 109/274 (38%), Gaps = 38/274 (13%)
Query: 235 ILTVAASPDGKYVVSGGRDRKLIVWSTESLAPVKIIPTKDRRGEVLGLAFKKNSDQLF-- 292
+ ++A S DG+ V+ G D L V+ E + + + +V +AF S Q+
Sbjct: 268 VFSIAVSSDGREVLGGANDGCLYVFDREQNR--RTLQIESHEDDVNAVAFADISSQILFS 325
Query: 293 ----AACADYKIRTYAINQFSQLEILYGHQDLVIDISALNMERCVTVGSRDRTAMLWKIA 348
A C + RT + + L GHQD + I + R + S+D+T LW
Sbjct: 326 GGDDAICKVWDRRTMREDDPKPVGALAGHQDGITFIDSKGDARYLISNSKDQTIKLW--- 382
Query: 349 DESRLTFRGGDDPERLRKKWLKNQQLSAEGGEDMHEQTPPHFYGEGSIDCISMVDDSHFV 408
D R + R G + R Q + + + +Q P + + + + DS +
Sbjct: 383 DIRRFSSREGMEASR--------QAATQQNWDYRWQQVPKKAWRK-----LKLPGDSSLM 429
Query: 409 TGSDNGNISLWSLSKKKPLFT-----VRTAHGVVPLVEDKKISGEVSDELRNAQLQGGSI 463
T +G + + P+ + + + +V +SG + +L N + +
Sbjct: 430 TYRGHGVLHTLIRCRFSPIHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLTNHK---ACV 486
Query: 464 AQPFWITSLYAVPYSDIFISGSWNGTLKVWKINE 497
W P+ + +S SW+G L++W+ +
Sbjct: 487 RDVSW------HPFEEKIVSSSWDGNLRLWQYRQ 514
>At5g25150 [K] KOG0263 Transcription initiation factor TFIID subunit TAF5
(also component of histone acetyltransferase SAGA)
Length = 700
Score = 50.4 bits (119), Expect = 7e-06
Identities = 28/126 (22%), Positives = 56/126 (44%), Gaps = 5/126 (3%)
Query: 229 EGHYDEILTVAASPDGKYVVSGGRDRKLIVWSTESLAPVKIIPTKDRRGEVLGLAFKKNS 288
+GH + SP G Y S DR +WS + + P++I+ G + + + N
Sbjct: 457 KGHNYPVWDAQFSPFGHYFASCSHDRTARIWSMDRIQPLRIMA-----GHLSDVDWHPNC 511
Query: 289 DQLFAACADYKIRTYAINQFSQLEILYGHQDLVIDISALNMERCVTVGSRDRTAMLWKIA 348
+ + +D +R + + + I GH+ +V+ ++ R + G D T M+W ++
Sbjct: 512 NYIATGSSDKTVRLWDVQTGECVRIFIGHRSMVLSLAMSPDGRYMASGDEDGTIMMWDLS 571
Query: 349 DESRLT 354
+T
Sbjct: 572 TARCIT 577
>7297305 [T] KOG0279 G protein beta subunit-like protein
Length = 318
Score = 50.1 bits (118), Expect = 9e-06
Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 229 EGHYDEILTVAASPDGKYVVSGGRDRKLIVWSTESLAPVKIIPTKDRRGE-VLGLAFKKN 287
EGH ++L+VA S D + +VSG RD+ + +W+T LA K +D + V + F N
Sbjct: 103 EGHTKDVLSVAFSADNRQIVSGSRDKTIKLWNT--LAECKFTIQEDGHTDWVSCVRFSPN 160
Query: 288 -SDQLFAACA-DYKIRTYAINQFSQLEILYGHQDLVIDISALNMERCVTVGSRDRTAMLW 345
S+ + +C D ++ + + +GH + ++ T G +D A+LW
Sbjct: 161 HSNPIIVSCGWDRTVKVWNLANCKLKNNHHGHNGYLNTVTVSPDGSLCTSGGKDSKALLW 220
Query: 346 KIADESRL 353
+ D L
Sbjct: 221 DLNDGKNL 228
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.314 0.133 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,048,630
Number of Sequences: 60738
Number of extensions: 1495935
Number of successful extensions: 9722
Number of sequences better than 1.0e-05: 33
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 9458
Number of HSP's gapped (non-prelim): 157
length of query: 567
length of database: 30,389,216
effective HSP length: 112
effective length of query: 455
effective length of database: 23,586,560
effective search space: 10731884800
effective search space used: 10731884800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)