ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII2845 good J KOG1749 Translation, ribosomal structure and biogenesis 40S ribosomal protein S23
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII2845 982669 982259 -137
(137 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YPR132w [J] KOG1749 40S ribosomal protein S23 244 3e-65
YGR118w [J] KOG1749 40S ribosomal protein S23 244 3e-65
SPBP4H10.13 [J] KOG1749 40S ribosomal protein S23 223 6e-59
SPAC23C11.02c [J] KOG1749 40S ribosomal protein S23 223 6e-59
Hs4506701 [J] KOG1749 40S ribosomal protein S23 207 4e-54
7303214 [J] KOG1749 40S ribosomal protein S23 204 3e-53
At5g02960 [J] KOG1749 40S ribosomal protein S23 204 4e-53
CE05747 [J] KOG1749 40S ribosomal protein S23 201 2e-52
At3g09680 [J] KOG1749 40S ribosomal protein S23 197 3e-51
ECU10g0400 [J] KOG1749 40S ribosomal protein S23 154 3e-38
Hs22042004 [J] KOG1749 40S ribosomal protein S23 152 1e-37
Hs20470197 [J] KOG1749 40S ribosomal protein S23 74 4e-14
7290321 [J] KOG1750 Mitochondrial/chloroplast ribosomal protein S12 53 1e-07
SPAC4F8.06 [J] KOG1750 Mitochondrial/chloroplast ribosomal prote... 51 4e-07
Hs11056056 [J] KOG1750 Mitochondrial/chloroplast ribosomal prote... 51 5e-07
CE18920 [J] KOG1750 Mitochondrial/chloroplast ribosomal protein S12 49 2e-06
YNR036c [J] KOG1750 Mitochondrial/chloroplast ribosomal protein S12 49 2e-06
AtCh002 [J] KOG1750 Mitochondrial/chloroplast ribosomal protein S12 48 3e-06
AtCh001 [J] KOG1750 Mitochondrial/chloroplast ribosomal protein S12 48 3e-06
>YPR132w [J] KOG1749 40S ribosomal protein S23
Length = 145
Score = 244 bits (622), Expect = 3e-65
Identities = 120/124 (96%), Positives = 122/124 (97%)
Query: 14 SRWAETTYKKRLLGTAFKSSPFGGSSHAKGIVLEKIGIESKQPNSAIRKCVRVQLIKNGK 73
+RWAE YKKRLLGTAFKSSPFGGSSHAKGIVLEK+GIESKQPNSAIRKCVRVQLIKNGK
Sbjct: 22 NRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGK 81
Query: 74 KVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKE 133
KVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKE
Sbjct: 82 KVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKE 141
Query: 134 KPRS 137
KPRS
Sbjct: 142 KPRS 145
>YGR118w [J] KOG1749 40S ribosomal protein S23
Length = 145
Score = 244 bits (622), Expect = 3e-65
Identities = 120/124 (96%), Positives = 122/124 (97%)
Query: 14 SRWAETTYKKRLLGTAFKSSPFGGSSHAKGIVLEKIGIESKQPNSAIRKCVRVQLIKNGK 73
+RWAE YKKRLLGTAFKSSPFGGSSHAKGIVLEK+GIESKQPNSAIRKCVRVQLIKNGK
Sbjct: 22 NRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGK 81
Query: 74 KVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKE 133
KVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKE
Sbjct: 82 KVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKE 141
Query: 134 KPRS 137
KPRS
Sbjct: 142 KPRS 145
>SPBP4H10.13 [J] KOG1749 40S ribosomal protein S23
Length = 143
Score = 223 bits (568), Expect = 6e-59
Identities = 108/123 (87%), Positives = 118/123 (95%)
Query: 15 RWAETTYKKRLLGTAFKSSPFGGSSHAKGIVLEKIGIESKQPNSAIRKCVRVQLIKNGKK 74
RWA+ YKKRLLGTA+KSSPFGGSSHAKGIV+EKIG+E+KQPNSAIRKCVRVQLIKNGKK
Sbjct: 21 RWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQLIKNGKK 80
Query: 75 VTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEK 134
VTAFVP+DGCLNFVDENDEVLL+GFGRKGKAKGDIPGVRFKVVKV+GV L AL+ EKKEK
Sbjct: 81 VTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEK 140
Query: 135 PRS 137
PR+
Sbjct: 141 PRA 143
>SPAC23C11.02c [J] KOG1749 40S ribosomal protein S23
Length = 143
Score = 223 bits (568), Expect = 6e-59
Identities = 108/123 (87%), Positives = 118/123 (95%)
Query: 15 RWAETTYKKRLLGTAFKSSPFGGSSHAKGIVLEKIGIESKQPNSAIRKCVRVQLIKNGKK 74
RWA+ YKKRLLGTA+KSSPFGGSSHAKGIV+EKIG+E+KQPNSAIRKCVRVQLIKNGKK
Sbjct: 21 RWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQLIKNGKK 80
Query: 75 VTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEK 134
VTAFVP+DGCLNFVDENDEVLL+GFGRKGKAKGDIPGVRFKVVKV+GV L AL+ EKKEK
Sbjct: 81 VTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEK 140
Query: 135 PRS 137
PR+
Sbjct: 141 PRA 143
>Hs4506701 [J] KOG1749 40S ribosomal protein S23
Length = 143
Score = 207 bits (526), Expect = 4e-54
Identities = 98/123 (79%), Positives = 113/123 (91%)
Query: 15 RWAETTYKKRLLGTAFKSSPFGGSSHAKGIVLEKIGIESKQPNSAIRKCVRVQLIKNGKK 74
+W + YKK LGTA K++PFGG+SHAKGIVLEK+G+E+KQPNSAIRKCVRVQLIKNGKK
Sbjct: 21 KWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK 80
Query: 75 VTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEK 134
+TAFVPNDGCLNF++ENDEVL+AGFGRKG A GDIPGVRFKVVKV+ VSLLAL+K KKE+
Sbjct: 81 ITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKER 140
Query: 135 PRS 137
PRS
Sbjct: 141 PRS 143
>7303214 [J] KOG1749 40S ribosomal protein S23
Length = 216
Score = 204 bits (519), Expect = 3e-53
Identities = 97/123 (78%), Positives = 113/123 (91%)
Query: 15 RWAETTYKKRLLGTAFKSSPFGGSSHAKGIVLEKIGIESKQPNSAIRKCVRVQLIKNGKK 74
RWA+ YKK LGT +K++PFGG+SHAKGIVLEK+G+E+KQPNSAIRKCVRVQLIKNGKK
Sbjct: 94 RWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK 153
Query: 75 VTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEK 134
+TAFVP DG LN+++ENDEVL+AGFGRKG A GDIPGVRFKVVKV+ VSLLAL+KEKKE+
Sbjct: 154 ITAFVPRDGSLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKER 213
Query: 135 PRS 137
PRS
Sbjct: 214 PRS 216
>At5g02960 [J] KOG1749 40S ribosomal protein S23
Length = 142
Score = 204 bits (518), Expect = 4e-53
Identities = 101/123 (82%), Positives = 110/123 (89%), Gaps = 1/123 (0%)
Query: 15 RWAETTYKKRLLGTAFKSSPFGGSSHAKGIVLEKIGIESKQPNSAIRKCVRVQLIKNGKK 74
RWA+ YKK LG +K PF GSSHAKGIVLEKIGIE+KQPNSAIRKC RVQLIKNGKK
Sbjct: 21 RWADKQYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKK 79
Query: 75 VTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEK 134
+ AFVPNDGCLN+++ENDEVL+AGFGRKG A GDIPGVRFKVVKVSGVSLLAL+KEKKEK
Sbjct: 80 IAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 139
Query: 135 PRS 137
PRS
Sbjct: 140 PRS 142
>CE05747 [J] KOG1749 40S ribosomal protein S23
Length = 143
Score = 201 bits (512), Expect = 2e-52
Identities = 95/123 (77%), Positives = 111/123 (90%)
Query: 15 RWAETTYKKRLLGTAFKSSPFGGSSHAKGIVLEKIGIESKQPNSAIRKCVRVQLIKNGKK 74
RW + YKK +GT +KS+PFGG+SHAKGIVLEKIG+E+KQPNSAIRKCVRVQLIKNGKK
Sbjct: 21 RWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKK 80
Query: 75 VTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEK 134
+TAFVPNDGCLNFV+ENDEVL++GFGR G A GDIPGVRFK+VKV+ SL+AL+K KKE+
Sbjct: 81 ITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANTSLIALFKGKKER 140
Query: 135 PRS 137
PRS
Sbjct: 141 PRS 143
>At3g09680 [J] KOG1749 40S ribosomal protein S23
Length = 136
Score = 197 bits (502), Expect = 3e-51
Identities = 99/123 (80%), Positives = 108/123 (87%), Gaps = 1/123 (0%)
Query: 15 RWAETTYKKRLLGTAFKSSPFGGSSHAKGIVLEKIGIESKQPNSAIRKCVRVQLIKNGKK 74
RWA+ YKK G +K PF SSHAKGIVLEKIGIE+KQPNSAIRKC RVQLIKNGKK
Sbjct: 15 RWADKHYKKSNRGNEWKK-PFACSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKK 73
Query: 75 VTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEK 134
+ AFVPNDGCLN+++ENDEVL+AGFGRKG A GDIPGVRFKVVKVSGVSLLAL+KEKKEK
Sbjct: 74 IAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 133
Query: 135 PRS 137
PRS
Sbjct: 134 PRS 136
>ECU10g0400 [J] KOG1749 40S ribosomal protein S23
Length = 140
Score = 154 bits (389), Expect = 3e-38
Identities = 75/121 (61%), Positives = 93/121 (75%)
Query: 15 RWAETTYKKRLLGTAFKSSPFGGSSHAKGIVLEKIGIESKQPNSAIRKCVRVQLIKNGKK 74
R A+T Y+KR LGT +K S G + AK IVLEKIG+E+KQPNSAIRK VR QLI GKK
Sbjct: 18 RLADTAYRKRALGTKYKHSVLGRAPQAKAIVLEKIGVEAKQPNSAIRKAVRCQLIATGKK 77
Query: 75 VTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEK 134
+TAFVP DG + +++ NDEV + GFG+KG++ GDIPG+RFKV KV VSL A++ KKEK
Sbjct: 78 ITAFVPYDGSVTYIESNDEVTVEGFGKKGRSVGDIPGIRFKVCKVQNVSLHAIFTGKKEK 137
Query: 135 P 135
P
Sbjct: 138 P 138
>Hs22042004 [J] KOG1749 40S ribosomal protein S23
Length = 216
Score = 152 bits (385), Expect = 1e-37
Identities = 79/116 (68%), Positives = 94/116 (80%), Gaps = 5/116 (4%)
Query: 22 KKRLLGTAFKSSPFGGSSHAKGIVLEKIGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPN 81
KK LGTA K++PFGG+S AKG++LEK+G+E+KQPNS RK VRVQ IKNGKK+ AFVPN
Sbjct: 106 KKAHLGTAPKANPFGGASPAKGMMLEKVGVEAKQPNSTTRKSVRVQCIKNGKKIRAFVPN 165
Query: 82 DGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS 137
DG +ENDE +AGFG+K A GDIPGV FKVVKV+ VSLLAL+K KKE+PRS
Sbjct: 166 DG-----EENDEAPVAGFGQKSHAVGDIPGVCFKVVKVANVSLLALYKGKKERPRS 216
>Hs20470197 [J] KOG1749 40S ribosomal protein S23
Length = 130
Score = 74.3 bits (181), Expect = 4e-14
Identities = 34/53 (64%), Positives = 45/53 (84%)
Query: 27 GTAFKSSPFGGSSHAKGIVLEKIGIESKQPNSAIRKCVRVQLIKNGKKVTAFV 79
G+A K++ F G+S+AKGI+LEK+ +E+KQPNSA RKC RVQLIKN KK+T+ V
Sbjct: 76 GSALKANSFKGASNAKGIMLEKVEVEAKQPNSAFRKCFRVQLIKNSKKITSVV 128
>7290321 [J] KOG1750 Mitochondrial/chloroplast ribosomal protein S12
Length = 140
Score = 53.1 bits (126), Expect = 1e-07
Identities = 34/85 (40%), Positives = 50/85 (58%), Gaps = 8/85 (9%)
Query: 34 PFGGSSHAKGIVLEKIGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDE 93
P G AKG+VL+ + + K+PNSA RKCV V+L GK++ A++P G N + N
Sbjct: 51 PLDGKPFAKGVVLKTLIKKPKKPNSANRKCVLVRL-STGKEMVAYIPGIG-HNLQEHN-- 106
Query: 94 VLLAGFGRKGKAKGDIPGVRFKVVK 118
++L GR D+PGV+ K V+
Sbjct: 107 IVLCRVGR----LQDVPGVKLKAVR 127
>SPAC4F8.06 [J] KOG1750 Mitochondrial/chloroplast ribosomal protein S12
Length = 146
Score = 51.2 bits (121), Expect = 4e-07
Identities = 36/97 (37%), Positives = 55/97 (56%), Gaps = 8/97 (8%)
Query: 22 KKRLLGTAFKSSPFGGSSHAKGIVLEKIGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPN 81
+KR T +S GS +G+ ++ K+PNSA+RK RV+L G+ VTA++P
Sbjct: 32 EKRPEKTNKQSVALEGSPFRRGVCTRVFTVKPKKPNSAVRKVARVRL-STGRSVTAYIPG 90
Query: 82 DGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVK 118
G + E+ VLL G G+A+ D PGV++ VV+
Sbjct: 91 IG--HNAQEHAVVLLRG----GRAQ-DCPGVQYHVVR 120
>Hs11056056 [J] KOG1750 Mitochondrial/chloroplast ribosomal protein S12
Length = 138
Score = 50.8 bits (120), Expect = 5e-07
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 8/88 (9%)
Query: 31 KSSPFGGSSHAKGIVLEKIGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDE 90
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + + E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 91 NDEVLLAGFGRKGKAKGDIPGVRFKVVK 118
+ VL+ G G+ + D+PGV+ VV+
Sbjct: 105 HQIVLVEG----GRTQ-DLPGVKLTVVR 127
>CE18920 [J] KOG1750 Mitochondrial/chloroplast ribosomal protein S12
Length = 157
Score = 49.3 bits (116), Expect = 2e-06
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 8/86 (9%)
Query: 33 SPFGGSSHAKGIVLEKIGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDEND 92
S G SH KGIVL+ + K+PNS RKC V+L G +V A++PN G + + E+
Sbjct: 68 SAISGYSHYKGIVLKTVIRHPKKPNSGNRKCAIVRL-STGAEVCAYIPNVG--HNLQEHS 124
Query: 93 EVLLAGFGRKGKAKGDIPGVRFKVVK 118
+VL+ KG + D+ V+ +V+
Sbjct: 125 QVLV-----KGGRRRDLISVKANIVR 145
>YNR036c [J] KOG1750 Mitochondrial/chloroplast ribosomal protein S12
Length = 153
Score = 48.9 bits (115), Expect = 2e-06
Identities = 30/80 (37%), Positives = 51/80 (63%), Gaps = 8/80 (10%)
Query: 42 KGIVLEKIGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGR 101
KG+VL + ++ K+PNSA RK RV+L NG V+A++P +G + E+ V + G
Sbjct: 59 KGVVLRVMVLKPKKPNSAQRKACRVRL-TNGNVVSAYIPGEG--HDAQEHSIVYVRG--- 112
Query: 102 KGKAKGDIPGVRFKVVKVSG 121
G+ + D+PGV++ V++ +G
Sbjct: 113 -GRCQ-DLPGVKYHVIRGAG 130
>AtCh002 [J] KOG1750 Mitochondrial/chloroplast ribosomal protein S12
Length = 123
Score = 48.1 bits (113), Expect = 3e-06
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 8/88 (9%)
Query: 31 KSSPFGGSSHAKGIVLEKIGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDE 90
KS G +G I K+PNSA+RK RV+L +G ++TA++P G + + E
Sbjct: 20 KSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRL-TSGFEITAYIPGIG--HNLQE 76
Query: 91 NDEVLLAGFGRKGKAKGDIPGVRFKVVK 118
+ VL+ G G+ K D+PGVR+ +V+
Sbjct: 77 HSVVLVRG----GRVK-DLPGVRYHIVR 99
>AtCh001 [J] KOG1750 Mitochondrial/chloroplast ribosomal protein S12
Length = 123
Score = 48.1 bits (113), Expect = 3e-06
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 8/88 (9%)
Query: 31 KSSPFGGSSHAKGIVLEKIGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDE 90
KS G +G I K+PNSA+RK RV+L +G ++TA++P G + + E
Sbjct: 20 KSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRL-TSGFEITAYIPGIG--HNLQE 76
Query: 91 NDEVLLAGFGRKGKAKGDIPGVRFKVVK 118
+ VL+ G G+ K D+PGVR+ +V+
Sbjct: 77 HSVVLVRG----GRVK-DLPGVRYHIVR 99
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.319 0.138 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,631,221
Number of Sequences: 60738
Number of extensions: 341172
Number of successful extensions: 681
Number of sequences better than 1.0e-05: 19
Number of HSP's better than 0.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 662
Number of HSP's gapped (non-prelim): 19
length of query: 137
length of database: 30,389,216
effective HSP length: 95
effective length of query: 42
effective length of database: 24,619,106
effective search space: 1034002452
effective search space used: 1034002452
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)