ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII2848 suspect: LH J KOG1749 Translation, ribosomal structure and biogenesis 40S ribosomal protein S23
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII2848 983313 982978 -112
(112 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores:
Score E
Sequences producing significant alignments: (bits) Value
YPR132w [J] KOG1749 40S ribosomal protein S23 49 9e-07
YGR118w [J] KOG1749 40S ribosomal protein S23 49 9e-07
>YPR132w [J] KOG1749 40S ribosomal protein S23
Length = 145
Score = 49.3 bits (116), Expect = 9e-07
Identities = 33/71 (46%), Positives = 42/71 (58%), Gaps = 16/71 (22%)
Query: 1 MGKGKPRGLNSARKLRVHRRN--------KYVIIDTRLK-------SFEKVITECERVGL 45
MGKGKPRGLNSARKLRVHRRN K ++ T K S K I E++G+
Sbjct: 1 MGKGKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIV-LEKLGI 59
Query: 46 KSEEDNNKDRK 56
+S++ N+ RK
Sbjct: 60 ESKQPNSAIRK 70
>YGR118w [J] KOG1749 40S ribosomal protein S23
Length = 145
Score = 49.3 bits (116), Expect = 9e-07
Identities = 33/71 (46%), Positives = 42/71 (58%), Gaps = 16/71 (22%)
Query: 1 MGKGKPRGLNSARKLRVHRRN--------KYVIIDTRLK-------SFEKVITECERVGL 45
MGKGKPRGLNSARKLRVHRRN K ++ T K S K I E++G+
Sbjct: 1 MGKGKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIV-LEKLGI 59
Query: 46 KSEEDNNKDRK 56
+S++ N+ RK
Sbjct: 60 ESKQPNSAIRK 70
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.318 0.135 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,814,709
Number of Sequences: 60738
Number of extensions: 264099
Number of successful extensions: 888
Number of sequences better than 1.0e-05: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 886
Number of HSP's gapped (non-prelim): 2
length of query: 112
length of database: 30,389,216
effective HSP length: 88
effective length of query: 24
effective length of database: 25,044,272
effective search space: 601062528
effective search space used: 601062528
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)