ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII2859 suspect: HSP U KOG1073 Intracellular trafficking, secretion, and vesicular transport Uncharacterized mRNA-associated protein RAP55
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII2859 987610 986723 -296
(296 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YPR129w [U] KOG1073 Uncharacterized mRNA-associated protein RAP55 137 2e-32
SPBC800.09 [U] KOG1073 Uncharacterized mRNA-associated protein R... 78 2e-14
At1g26110 [U] KOG1073 Uncharacterized mRNA-associated protein RAP55 66 5e-11
Hs17483092 [U] KOG1073 Uncharacterized mRNA-associated protein R... 62 8e-10
At5g45330 [U] KOG1073 Uncharacterized mRNA-associated protein RAP55 60 4e-09
CE21413 [U] KOG1073 Uncharacterized mRNA-associated protein RAP55 58 1e-08
7294565 [U] KOG1073 Uncharacterized mRNA-associated protein RAP55 57 2e-08
At4g19360 [U] KOG1073 Uncharacterized mRNA-associated protein RAP55 56 7e-08
>YPR129w [U] KOG1073 Uncharacterized mRNA-associated protein RAP55
Length = 349
Score = 137 bits (345), Expect = 2e-32
Identities = 63/78 (80%), Positives = 72/78 (91%)
Query: 1 MSQYIGKTIALISNTDNRYVGLLESIDSEKGVVTLRQVRCFGTEGRKGWGPEEIYPNPNI 60
MSQYIGKTI+LIS TDNRYVGLLE IDSEKG VTL++VRCFGTEGRK WGPEEIYPNP +
Sbjct: 1 MSQYIGKTISLISVTDNRYVGLLEDIDSEKGTVTLKEVRCFGTEGRKNWGPEEIYPNPTV 60
Query: 61 YDTVPFNGNDVKDLNILD 78
Y++V FNG++VKDL+ILD
Sbjct: 61 YNSVKFNGSEVKDLSILD 78
Score = 49.7 bits (117), Expect = 5e-06
Identities = 27/82 (32%), Positives = 42/82 (50%), Gaps = 11/82 (13%)
Query: 177 DSEFDFESNNAKFQNAEKPRESDIEQEKQTS-------KTDEIFYXXXXXXXXXXXXXXX 229
+ +FDF+SNNAKF + +D+E+EK+ ++DE FY
Sbjct: 202 NEDFDFQSNNAKFTKGDS---TDVEKEKELESAVHKQDESDEQFYNKKSSFFDTISTSTE 258
Query: 230 XXXXXAKWEEERQVNLDTFGQA 251
+W+EE+ +N+DTFGQA
Sbjct: 259 TNTNM-RWQEEKMLNVDTFGQA 279
>SPBC800.09 [U] KOG1073 Uncharacterized mRNA-associated protein RAP55
Length = 426
Score = 77.8 bits (190), Expect = 2e-14
Identities = 37/76 (48%), Positives = 54/76 (70%)
Query: 1 MSQYIGKTIALISNTDNRYVGLLESIDSEKGVVTLRQVRCFGTEGRKGWGPEEIYPNPNI 60
M+++IG I+LIS +D RYVG+L+ I+S+ + L+ VR GTEGRK +EI P+ N+
Sbjct: 1 MTEFIGSRISLISKSDIRYVGILQDINSQDSTLALKHVRWCGTEGRKQDPSQEIPPSDNV 60
Query: 61 YDTVPFNGNDVKDLNI 76
+D + F G+DVKDL I
Sbjct: 61 FDYIVFRGSDVKDLRI 76
>At1g26110 [U] KOG1073 Uncharacterized mRNA-associated protein RAP55
Length = 643
Score = 66.2 bits (160), Expect = 5e-11
Identities = 30/73 (41%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Query: 4 YIGKTIALISNTDNRYVGLLESIDSEKGVVTLRQVRCFGTEGRKGWGPEEIYPNPNIYDT 63
Y+G I+L S ++ RY G+L +I++++ + L+ VR FGTEGRK GP ++ P+ +Y+
Sbjct: 17 YVGSLISLTSKSEIRYEGILYNINTDESSIGLQNVRSFGTEGRKKDGP-QVPPSDKVYEY 75
Query: 64 VPFNGNDVKDLNI 76
+ F G D+KDL +
Sbjct: 76 ILFRGTDIKDLQV 88
>Hs17483092 [U] KOG1073 Uncharacterized mRNA-associated protein RAP55
Length = 463
Score = 62.4 bits (150), Expect = 8e-10
Identities = 32/75 (42%), Positives = 46/75 (60%), Gaps = 2/75 (2%)
Query: 4 YIGKTIALISNTDNRYVGLLESIDSEKGVVTLRQVRCFGTEGRKGWGPEEIYPNPNIYDT 63
YIG I+LIS + RY G+L +ID+E V L +VR FGTE R P I P +++
Sbjct: 7 YIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRP--IPPRDEVFEY 64
Query: 64 VPFNGNDVKDLNILD 78
+ F G+D+KDL + +
Sbjct: 65 IIFRGSDIKDLTVCE 79
>At5g45330 [U] KOG1073 Uncharacterized mRNA-associated protein RAP55
Length = 571
Score = 60.1 bits (144), Expect = 4e-09
Identities = 31/73 (42%), Positives = 46/73 (62%), Gaps = 1/73 (1%)
Query: 4 YIGKTIALISNTDNRYVGLLESIDSEKGVVTLRQVRCFGTEGRKGWGPEEIYPNPNIYDT 63
+IG I+LIS + RY G+L ++ + + L+ VR GTEGRK GP +I P +YD
Sbjct: 33 FIGSFISLISKYEIRYEGILYHLNVQDSTLGLKNVRSCGTEGRKKDGP-QIPPCDKVYDY 91
Query: 64 VPFNGNDVKDLNI 76
+ F G+D+KDL +
Sbjct: 92 ILFRGSDIKDLQV 104
>CE21413 [U] KOG1073 Uncharacterized mRNA-associated protein RAP55
Length = 340
Score = 58.2 bits (139), Expect = 1e-08
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 4 YIGKTIALISNTDNRYVGLLESIDSEKGVVTLRQVRCFGTEGRKGWGPEEIYPNPNIYDT 63
YIG I+LIS D RY G+L ++D+ + L +VR FGTE R P + ++Y+
Sbjct: 7 YIGSKISLISKLDIRYEGILYTVDTNDSTIALAKVRSFGTEKRPTANP--VAARDDVYEY 64
Query: 64 VPFNGNDVKDLNILD 78
+ F +D+KDL + D
Sbjct: 65 IIFKASDIKDLIVCD 79
>7294565 [U] KOG1073 Uncharacterized mRNA-associated protein RAP55
Length = 652
Score = 57.4 bits (137), Expect = 2e-08
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 5 IGKTIALISNTDNRYVGLLESIDSEKGVVTLRQVRCFGTEGRKGWGPEEIYPNPNIYDTV 64
+G I+LIS D RY G L ++D ++ + L VR FGTE R +I P IYD +
Sbjct: 8 LGSKISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRD--TQFQIAPQSQIYDYI 65
Query: 65 PFNGNDVKDLNILD 78
F G+D+KD+ +++
Sbjct: 66 LFRGSDIKDIRVVN 79
>At4g19360 [U] KOG1073 Uncharacterized mRNA-associated protein RAP55
Length = 268
Score = 55.8 bits (133), Expect = 7e-08
Identities = 28/71 (39%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 4 YIGKTIALISNTDNRYVGLLESIDSEKGVVTLRQVRCFGTEGRKGWGPEEIYPNPNIYDT 63
YIG + LI+N D RY G+L ++ ++ + L+ V C+GTEGR G +I P+ I +
Sbjct: 27 YIGSFVTLIANFDIRYEGILCFLNLQESTLGLQNVVCYGTEGRNQNG-VQIPPDTKIQNY 85
Query: 64 VPFNGNDVKDL 74
+ FNGN++K++
Sbjct: 86 ILFNGNNIKEI 96
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.310 0.131 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,211,143
Number of Sequences: 60738
Number of extensions: 296840
Number of successful extensions: 572
Number of sequences better than 1.0e-05: 8
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 554
Number of HSP's gapped (non-prelim): 16
length of query: 296
length of database: 30,389,216
effective HSP length: 106
effective length of query: 190
effective length of database: 23,950,988
effective search space: 4550687720
effective search space used: 4550687720
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)