ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII2886 good A KOG1856 RNA processing and modification Transcription elongation factor SPT6
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII2886 997800 993421 -1460
(1460 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YGR116w [A] KOG1856 Transcription elongation factor SPT6 1823 0.0
SPAC1F7.01c [A] KOG1856 Transcription elongation factor SPT6 578 e-164
Hs11321573 [A] KOG1856 Transcription elongation factor SPT6 349 2e-95
7290693 [A] KOG1856 Transcription elongation factor SPT6 290 1e-77
At1g65440 [A] KOG1856 Transcription elongation factor SPT6 280 1e-74
At1g63210 [A] KOG1856 Transcription elongation factor SPT6 263 1e-69
CE13120 [A] KOG1856 Transcription elongation factor SPT6 245 3e-64
7300889 [K] KOG1857 Transcription accessory protein TEX contains... 53 3e-06
>YGR116w [A] KOG1856 Transcription elongation factor SPT6
Length = 1451
Score = 1823 bits (4721), Expect = 0.0
Identities = 904/1348 (67%), Positives = 1068/1348 (79%), Gaps = 23/1348 (1%)
Query: 115 AGFKRPSASEAAKQRSGKLKRLKRVGDDXXXXXXXXXXXXXXRTNKXXXXXXXXXXXXXX 174
AG +R AS + SGK KRLKRVGD+ R +
Sbjct: 105 AGVERTKASSS----SGKFKRLKRVGDEGNAAESESDNVAASRQDSTSKLEDFFSEDEEE 160
Query: 175 XXXG--TGRA----------PSRKGVEKTVTLAXXXXXXXXXXXXXXXXXXARKFRIAEK 222
G GR +R + R+ RI EK
Sbjct: 161 EESGLRNGRNNEYGRDEEDHENRNRTADKGGILDELDDFIEDDEFSDEDDETRQRRIQEK 220
Query: 223 KRIKEQRLAQPTQITGLSPDKVDEMFEVFGDGHDYDWAXXXXXXXXXXXXXXXXXXXXXX 282
K ++EQ + QPTQITGLS DK+DEM+++FGDGHDYDWA
Sbjct: 221 KLLREQSIKQPTQITGLSSDKIDEMYDIFGDGHDYDWALEIENEELENGNDNNEAEEEEI 280
Query: 283 XX-LGIDSKRKKKLTLQDIYDLQDLKKNLLTEEDMNIRKADIPERYQELRTGLKNYGKLS 341
G KKK++LQDIYDL+DLKKNL+TE DM IRK DIPERYQELR G+ +YG +S
Sbjct: 281 DEETGAIKSTKKKISLQDIYDLEDLKKNLMTEGDMKIRKTDIPERYQELRAGITDYGNMS 340
Query: 342 PEDLELEKNWISDKIAVDKNFDADYDTTEFKEAIGNAINFIQQENLEVSFIYAYRRNYIS 401
ED ELE+NWI++KI+VDKNFDA+YD TEFKEAIGNAI FI +ENLEV FIYAYRRNYIS
Sbjct: 341 SEDQELERNWIAEKISVDKNFDANYDLTEFKEAIGNAIKFITKENLEVPFIYAYRRNYIS 400
Query: 402 SRSKDGFVLIEDDLWDIVFYDTEFHSIIYKRDYVKTFYEKLDIHDPIVDEYFSNQ---SM 458
SR KDGF+L EDDLWDIV D EFHS++ K+DYV+ FY +L I DPIV EYF NQ S+
Sbjct: 401 SREKDGFLLTEDDLWDIVSLDIEFHSLVNKKDYVQRFYAELHIDDPIVTEYFKNQNTASI 460
Query: 459 TELNSLQDIYDYVEFKYAQEINDVLLSTQQDATSKKHLKNSSYEKFKASALYQAINDTGI 518
ELNSLQDIYDY+EFKYA EIN++ ++ T KKHLKNSSYEKFKAS LYQA++D GI
Sbjct: 461 AELNSLQDIYDYLEFKYANEINEMFIN-HTGKTGKKHLKNSSYEKFKASPLYQAVSDIGI 519
Query: 519 TAEQVGENISAEHQLHPVVDHPSLKPTDSVANILEGPEAKDLQIFSQNPKLALETIEKYY 578
+AE VGENIS++HQ+HP VDHPS KP + + +IL + DLQ+F+ N KLA++T++KYY
Sbjct: 520 SAEDVGENISSQHQIHPPVDHPSSKPVEVIESILNA-NSGDLQVFTSNTKLAIDTVQKYY 578
Query: 579 ALELSKNPKVRQKIRDDFYKYYIVDVALTSKGRKEIQRGSPYEDIKYALGRTPAHFRSEP 638
+LELSKN K+R+K+R DF KYY+ DV LT+KG+KEIQ+GS YEDIKYA+ RTP HFR +P
Sbjct: 579 SLELSKNTKIREKVRSDFSKYYLADVVLTAKGKKEIQKGSLYEDIKYAINRTPMHFRRDP 638
Query: 639 DVFLRMLEAESLHLMNIQIHVSSQDQYTNHLFQTSLETSNTSEIASEWNSFRRDAFDSAL 698
DVFL+M+EAESL+L+++++H+SSQ QY HLFQ +LET+NTS+IA EWN+FR+ AF+ A+
Sbjct: 639 DVFLKMVEAESLNLLSVKLHMSSQAQYIEHLFQIALETTNTSDIAIEWNNFRKLAFNQAM 698
Query: 699 NKVFSDVSQEIKDELKKTCLRLVTKSVRHQFMFKLDQAPFIPNPKDPKIPRVLTITCGQG 758
+K+F D+SQE+KD L K C +LV K+VRH+FM KLDQAPFIPN +DPKIP++L++TCGQG
Sbjct: 699 DKIFQDISQEVKDNLTKNCQKLVAKTVRHKFMTKLDQAPFIPNVRDPKIPKILSLTCGQG 758
Query: 759 KFGSDAIIAVYLNRKTEFVRDYKIVENPFDRKEPELFENALDDIIQHCQPNVIGINGPNP 818
+FG+DAIIAVY+NRK +F+RDYKIV+NPFD+ PE FE+ LD+IIQ CQPN IGINGPNP
Sbjct: 759 RFGADAIIAVYVNRKGDFIRDYKIVDNPFDKTNPEKFEDTLDNIIQSCQPNAIGINGPNP 818
Query: 819 STQRLYXXXXXXXXXXXXXDNRGSHVPVIYVEDEVAVRYQSSERAAQEFPSKPTLVKYCI 878
TQ+ Y D+RG +P+IYVEDEVA+RYQ+SERAAQEFP+KP LVKYCI
Sbjct: 819 KTQKFYKRLQEVLHKKQIVDSRGHTIPIIYVEDEVAIRYQNSERAAQEFPNKPPLVKYCI 878
Query: 879 ALGRYIHSPLLEYANLTNEEXXXXXXXXXXXXXTRELFLQALETSFVDIVNLVGIEVNKA 938
AL RY+HSPLLEYANLT+EE + E ALET+FVDIVNLV +EVNKA
Sbjct: 879 ALARYMHSPLLEYANLTSEEVRSLSIHPHQNLLSSEQLSWALETAFVDIVNLVSVEVNKA 938
Query: 939 TDNHYYAKALRYIAGFGRRKSADFLESLQRLNEPLLARQQLITHDILTKTIFMNSAAFLY 998
TDN+YYA AL+YI+GFG+RK+ DFL+SLQRLNEPLLARQQLITH+IL KTIFMNSA FLY
Sbjct: 939 TDNNYYASALKYISGFGKRKAIDFLQSLQRLNEPLLARQQLITHNILHKTIFMNSAGFLY 998
Query: 999 ISWNEKNQRYEDLEHDQLDGTRIHPEDYHLATKVAADALEFDPDAIAEKEEQGTMSEFIE 1058
ISWNEK Q+YEDLEHDQLD TRIHPEDYHLATKVAADALE+DPD IAEKEEQGTMSEFIE
Sbjct: 999 ISWNEKRQKYEDLEHDQLDSTRIHPEDYHLATKVAADALEYDPDTIAEKEEQGTMSEFIE 1058
Query: 1059 LLREDPDRRTKLESLNLEAYAEELEKNTGQRKLNNLNTIVLELLEGFEELRNDFHPLHGD 1118
LLREDPDRR KLESLNLE+YAEELEKNTG RKLNNLNTIVLELL+GFEELRNDFHPL GD
Sbjct: 1059 LLREDPDRRAKLESLNLESYAEELEKNTGLRKLNNLNTIVLELLDGFEELRNDFHPLQGD 1118
Query: 1119 EVFKSLTGESEKTFFKGCIIPVRVERFRHNDIYGVTNSGVECVINAQRHIGAQLKRPAEE 1178
E+F+SLTGESEKTFFKG IIPVRVERF HNDI TNS VECV+NAQRH GAQL+RPA E
Sbjct: 1119 EIFQSLTGESEKTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANE 1178
Query: 1179 VYEIGKTYPAKVIYIDYDNISCEVSLLEHDIRRQYVPIHYSKDPSIWNVEQEMKDQEIEK 1238
+YEIGKTYPAKVIYIDY NI+ EVSLL+HD+++QYVPI YSKDPSIW+++QE++D E E+
Sbjct: 1179 IYEIGKTYPAKVIYIDYANITAEVSLLDHDVKQQYVPISYSKDPSIWDLKQELEDAEEER 1238
Query: 1239 KLALEEARAKRTHRVINHPYYGNFTGPQAEDYLRSRERGDFVIRQSSRGDDHLAITWKLD 1298
KL + EARAKRTHRVINHPYY F G QAEDYLRS+ERG+FVIRQSSRGDDHL ITWKLD
Sbjct: 1239 KLMMAEARAKRTHRVINHPYYFPFNGRQAEDYLRSKERGEFVIRQSSRGDDHLVITWKLD 1298
Query: 1299 KDLFQHVDILEKDKENPLALGKTLIVEDQKYHDLDQIIVEYLQNKVRLLNEITSNEKFKK 1358
KDLFQH+DI E +KENPLALGK LIV++QKY+DLDQIIVEYLQNKVRLLNE+TS+EKFK
Sbjct: 1299 KDLFQHIDIQELEKENPLALGKVLIVDNQKYNDLDQIIVEYLQNKVRLLNEMTSSEKFKS 1358
Query: 1359 GTKKEVIKFIEDYSKVNPNRSVYYFSFNYEHPGWFYLMFKINAQSQLYVWNVKLTHTGFF 1418
GTKK+V+KFIEDYS+VNPN+SVYYFS N+++PGWFYLMFKINA S+LY WNVKLT+TG+F
Sbjct: 1359 GTKKDVVKFIEDYSRVNPNKSVYYFSLNHDNPGWFYLMFKINANSKLYTWNVKLTNTGYF 1418
Query: 1419 LVNYNYPTVIQLCNGFKTLLKS-SSRNK 1445
LVNYNYP+VIQLCNGFKTLLKS SS+N+
Sbjct: 1419 LVNYNYPSVIQLCNGFKTLLKSNSSKNR 1446
>SPAC1F7.01c [A] KOG1856 Transcription elongation factor SPT6
Length = 1268
Score = 578 bits (1490), Expect = e-164
Identities = 391/1232 (31%), Positives = 635/1232 (50%), Gaps = 101/1232 (8%)
Query: 238 GLSPDKVDEMFEVFGDGHDYDWAXXXXXXXXXXXXXXXXXXXXXXXXLGIDSKRKKKLTL 297
G+S D +++EVFGDG DY +A + + ++ ++L
Sbjct: 109 GISDDDYIQIYEVFGDGTDYAFALEDEDA---------------------EDELEESVSL 147
Query: 298 QDIYDLQDLKKNLLTEEDMNIRKADIPERYQELRTGLKNYGKLSPEDLELEKNWISDKIA 357
+ I++ +LK +LTEED IR D PER Q +K S ++ + WI D +
Sbjct: 148 KTIFEPSELKDKMLTEEDEIIRITDEPERMQLY---MKRNIDCSEDEFREQVAWIIDYLL 204
Query: 358 VDKNFDADYDTTE-FKEAIGNAINFIQQENLEVSFIYAYRRNYISSRSKDGF----VLIE 412
++ D D + E F+ A+ ++F +++LEV FI+ +RR+YI +++ +L +
Sbjct: 205 KNRR-DIDAELYEPFQTAVRYVVHFFIRDSLEVPFIWQHRRDYIVHNNRERNTITPLLSQ 263
Query: 413 DDLWDIVFYDTEFHSIIYKRDYVKTFYEKLDIHDPIVDEYFSNQSMTELNSLQDIYDYVE 472
+DLW+I F T+F S+ K+ + Y L I+D +V + ++ + L+++ D+ DY+
Sbjct: 264 NDLWNIFFLCTKFWSLHSKKQDILKLYSDLGINDDLVVPFC--EAASSLDAIDDLNDYIH 321
Query: 473 FKYAQEINDVLLSTQQDATSKKHLKNSSYEKFKASALYQAINDTGITAEQVGENISAEHQ 532
F Y+++I D L + K S +EKF+ S+LY + + G++A+ N++ +
Sbjct: 322 FTYSEQIRDRALLMGTGLRRPQGSKYSFFEKFRKSSLYNLVKEFGMSAKDFSFNVAQGAR 381
Query: 533 LHPVVDHPSLKPTDS----VANILEGPEAKDLQIFSQNPKLALETIEKYYALELSKNPKV 588
L V D+ +L P + V N L PE L+ + A E+ +P+
Sbjct: 382 LRFVEDN-TLSPEELSRTYVTNELSSPEQ------------VLQKARRVLAEEIIHDPQF 428
Query: 589 RQKIRDDFYKYYIVDVALTSKGRKEIQRGSPYEDIKYALGRTPAHFRSEPDVFLRMLEAE 648
R+ RD Y +V V T KG ++I PY + KY + F EP +FL+ML+AE
Sbjct: 429 RKSFRDKLYNAGVVTVLATQKGVRKIGSEHPYYEFKYLKRKPLGSFELEPILFLKMLKAE 488
Query: 649 SLHLMNIQIHVSSQDQYTNHLFQTSLETSNTSEIASEWNSFRRDAFDSALNKVFSDVSQE 708
L+ + I D L + + + N SE A +WN+ R + +
Sbjct: 489 EEGLIQLSIEFEDPDDVFKGLLELFV-SDNFSENAMQWNAQRELVLKEVFKRFSALAPDA 547
Query: 709 IKDELKKTCLRLVTKSVRHQFMFKLDQAPFIPNPKD---PKIPRVLTITCGQGKFGSDAI 765
I++ L+ L + R+Q +LDQAP+ P+ K+ IP VL ++ G+G+ SDAI
Sbjct: 548 IRETLRSRYLDELGMRCRNQLFSRLDQAPYEPSTKNFDRGTIPSVLAVSNGKGE-SSDAI 606
Query: 766 IAVYLNRKTEFVRDYKIVENPFDRKEPELFENALDDIIQHCQPNVIGINGPNPSTQRLYX 825
I V+++ E K+ + D +F + ++ +P+VIG++G + S ++
Sbjct: 607 ICVFVDDVGEPTDSLKLADLR-DLANQAMFA----EFVEKVKPDVIGVSGMSVSAHKI-- 659
Query: 826 XXXXXXXXXXXXDNRGSHVPV--IYVEDEVAVRYQSSERAAQEFPSKPTLVKYCIALGRY 883
D+ SH PV I V DEVA YQ+S RA EFP+ PT+ YC+AL RY
Sbjct: 660 -------RQHVQDSLTSHEPVDLIMVNDEVARLYQNSTRAVDEFPTLPTISCYCVALARY 712
Query: 884 IHSPLLEYANLTNEEXXXXXXXXXXXXXTRELFLQALETSFVDIVNLVGIEVNKATDNHY 943
+ +PL EYA + + ++ + LET+ VDI +LVGI++N+A N Y
Sbjct: 713 VQNPLFEYAAM-GRDLMSLSFDPWQHLLPPDVLWKYLETALVDISSLVGIDINEAVTNKY 771
Query: 944 YAKALRYIAGFGRRKSADFLESLQRLNEPLLARQQLITHDILTKTIFMNSAAFLYISWNE 1003
A L YIAG G RK+ L+ + + R LI+ I+++ +F+N ++F I
Sbjct: 772 EANILPYIAGLGPRKADYVLKKIAATGGRIDNRSDLISKQIMSRKVFINCSSFFIIP--- 828
Query: 1004 KNQRYEDLEHDQLDGTRIHPEDYHLATKVAADALEFDPDAIAEKE-EQGTMSEFIELLRE 1062
N Y ++ D LD TRIH EDY LA K+A+DALE D + I E E +G + +E
Sbjct: 829 -NDEYPNM--DILDSTRIHNEDYELARKMASDALELDEEDIEELETNRGVVYHLLE---- 881
Query: 1063 DPDRRTKLESLNLEAYAEELEKNTGQRKLNNLNTIVLELLEGFEELRNDFHPLHGDEVFK 1122
+ KL+ L LE YA++LE+ Q+K N L I LEL + + E RN FH L E+F
Sbjct: 882 -ENETGKLDELVLEEYADQLEREFHQKKRNTLEKIRLELKDPYGEQRNVFHKLTPSEIFL 940
Query: 1123 SLTGESEKTFFKGCIIPVRVERFRHNDIYGVTNSGVECVINAQRHIGAQLKRPAEEVYEI 1182
LTGE+ + I+PV V R + + + G++ I A + P ++ ++
Sbjct: 941 MLTGENPEELQADAIVPVNVRRVTNRFVAVKLDCGIDGNIKADEVSDDFI--PPPQLLQV 998
Query: 1183 GKTYPAKVIYIDYDNISCEVSL----LEHDIRRQYVPIHYSKDPSIWNVEQEMKDQEIEK 1238
G+T +I +D N ++SL L+ ++ H + S W+ E E +D E
Sbjct: 999 GQTVEGVIISLDEANFMVDLSLRNSVLQSANSKRQTSSHRT---SYWDTEAEKRDTE--- 1052
Query: 1239 KLALEEARAKRTHRVINHPYYGNFTGPQAEDYLRSRERGDFVIRQSSRGDDHLAITWKLD 1298
++ E +R RVI HP + + QAE YL + GD VIR SS+G DH+ +TWK+
Sbjct: 1053 RMQAETQAEQRVARVIKHPLFKDLNASQAEAYLSKMQVGDLVIRPSSKGSDHIVVTWKVA 1112
Query: 1299 KDLFQHVDILEKDKENPLALGKTLIVEDQ------KYHDLDQIIVEYLQNKVRLLNEITS 1352
+ +QH+D+LE +KEN +G+ L+V+ + +Y DLD++IV +++ + ++E+
Sbjct: 1113 EGSYQHIDVLELEKENEFTIGQKLLVKGRFEKMTYQYSDLDELIVLHIKAIAKKIDEMCI 1172
Query: 1353 NEKFKKGTKKEVIKFIEDYSKVNPNRSVYYFSFNYEHPGWFYLMFKINAQSQLYVWNVKL 1412
++KF+KGT+ E K++E YS+ NP RS Y F F+++HPG+F L FK + S + W VK+
Sbjct: 1173 HDKFRKGTQAETEKWLESYSEANPKRSCYAFCFDHQHPGYFILCFKASVNSPVTAWPVKV 1232
Query: 1413 THTGFFLVNYNYPTVIQLCNGFKTLLKSSSRN 1444
FFL Y + LCNGFK L + ++N
Sbjct: 1233 IPNAFFLQGNVYGDMTALCNGFKLLYAARTKN 1264
>Hs11321573 [A] KOG1856 Transcription elongation factor SPT6
Length = 1603
Score = 349 bits (895), Expect = 2e-95
Identities = 315/1291 (24%), Positives = 571/1291 (43%), Gaps = 184/1291 (14%)
Query: 290 KRKKKLTLQDIYDLQDLKKNLLTEEDMNIRKADIPERYQELRTGLKNYGKLSPEDLELEK 349
KR + ++ ++Y+ +L+ + LT++D IR D+PER+Q +K ++LE E
Sbjct: 138 KRVSRRSIFEMYEPSELESSHLTDQDNEIRATDLPERFQLRSIPVKG---AEDDELEEEA 194
Query: 350 NWI------SDKIAVDKN---FDADYDTTEFK-------EAIGNAINFIQQENLEVSFIY 393
+WI + I++ ++ D + F + I A+ F++ ++ EV FI
Sbjct: 195 DWIYRNAFATPTISLQESCDYLDRGQPASSFSRKGPSTIQKIKEALGFMRNQHFEVPFIA 254
Query: 394 AYRRNYISSRSKDGFVLIEDDLWDIVFYDTEFHSIIYKRDYVKTFYEKLDIHD------- 446
YR+ Y+ L +DLW + +D ++ + +++ + +EK+ +
Sbjct: 255 FYRKEYVEPE------LHINDLWRVWQWDEKWTQLRIRKENLTRLFEKMQAYQYEQISAD 308
Query: 447 ---PIVD--------EYFSNQSMTELNSLQDIYDYVEFKYAQEI---------------- 479
P+ D + + + ++ L+D+Y++ Y ++I
Sbjct: 309 PDKPLADGIRALDTTDMERLKDVQSMDELKDVYNHFLLYYGRDIPKMQNAAKASRKKLKR 368
Query: 480 -----------NDVLLSTQQDATSKKHLKNSSYEKFKASALYQAINDTGITAEQVGENIS 528
++ Q+ K+ + Y +++ L G+T EQ GEN+
Sbjct: 369 VREEGDEEGEGDEAEDEEQRGPELKQASRRDMYTICQSAGLDGLAKKFGLTPEQFGENLR 428
Query: 529 AEHQLHPVVDHPSLKPTDSVANILEGPEAKDLQIFSQ--NPKLALETIEKYYALELSKNP 586
+Q H P+ +P + AKD + SQ P+ LE AL++++ P
Sbjct: 429 DSYQRHETEQFPA-EPLEL---------AKDY-VCSQFPTPEAVLEGARYMVALQIAREP 477
Query: 587 KVRQKIRDDFYKYYIVDVALTSKGRKEIQRGSPYEDIKYALGRTPAHFRSEPDVFLRMLE 646
VRQ +R F + +++ T KGRK++ KY + R + + + + E
Sbjct: 478 LVRQVLRQTFQERAKLNITPTKKGRKDVDEAHYAYSFKYLKNKPVKELRDDQFLKICLAE 537
Query: 647 AESLHLMNIQIHVSSQDQYTNHLFQTSLET-------SNTSEIASEWNSFRRDAFDSALN 699
E L +I I + + Y N QT E S EWN R A + AL
Sbjct: 538 DEGLLTTDISIDLKGVEGYGND--QTYFEEIKQFYYRDEFSHQVQEWNRQRTMAIERALQ 595
Query: 700 K-VFSDVSQEIKDELKKTCLRLVTKSVRHQFMFKLDQAPFIPNPKDPKIPRVLTITCGQG 758
+ ++ +++E+K++L V K+ + L AP+ P+ + + + G+G
Sbjct: 596 QFLYVQMAKELKNKLLAEAKEYVIKACSRKLYNWLRVAPYRPDQQVEEDDDFMDENQGKG 655
Query: 759 ------KFGS---DAIIAVYLNRK---TEFVRDYKIVENPFDRKEPELFENALD-----D 801
F S + +N + T+F+R + +E E + A D
Sbjct: 656 IRVLGIAFSSARDHPVFCALVNGEGEVTDFLRLPHFTKRRTAWREEEREKKAQDIETLKK 715
Query: 802 IIQHCQPNVIGINGPNPSTQRLYXXXXXXXXXXXXXDNRGSHVPVIYVEDEVAVRYQSSE 861
+ + +P+V+ + G N Q L S + V V++E+A+ Y +S+
Sbjct: 716 FLLNKKPHVVTVAGENRDAQMLIEDVKRIVHELDQGQQLSS-IGVELVDNELAILYMNSK 774
Query: 862 RAAQEFPSKPTLVKYCIALGRYIHSPLLEYANL--TNEEXXXXXXXXXXXXXTRELFLQA 919
++ EF P +++ ++L R I PL+E+A + ++E+ +E L A
Sbjct: 775 KSEAEFRDYPPVLRQAVSLARRIQDPLIEFAQVCSSDEDILCLKFHPLQEHVVKEELLNA 834
Query: 920 LETSFVDIVNLVGIEVNKATDNHYYAKALRYIAGFGRRKSADFLESLQRLNEPLLARQQL 979
L F++ VN VG++VN+A + Y ++Y+ G G RK L+ L++ N L +R QL
Sbjct: 835 LYCEFINRVNEVGVDVNRAIAHPYSQALIQYVCGLGPRKGTHLLKILKQNNTRLESRTQL 894
Query: 980 ITHDILTKTIFMNSAAFLYI---SWNEKNQRYEDLEHDQLDGTRIHPEDYHLATKVAADA 1036
+T + +FMN A FL I S + Y ++ LDG+R+HPE Y A K+A DA
Sbjct: 895 VTMCHMGPKVFMNCAGFLKIDTASLGDSTDSYIEV----LDGSRVHPETYEWARKMAVDA 950
Query: 1037 LEFDPDAIAEKEEQGTMSEFIELLREDPDRRTKLESLNLEAYAEELEKNTGQRKLNNLNT 1096
LE+D E E + +E + E+P+R L+ L+L+A+AEELE+ K L
Sbjct: 951 LEYD-----ESAEDANPAGALEEILENPER---LKDLDLDAFAEELERQGYGDKHITLYD 1002
Query: 1097 IVLELLEGFEELRNDFHPLHGDEVFKSLTGESEKTFFKGCIIPVRVERFRH--------- 1147
I EL +++LR + + +E+F LT E+ +TF+ G +I V H
Sbjct: 1003 IRAELSCRYKDLRTAYRSPNTEEIFNMLTKETPETFYIGKLIICNVTGIAHRRPQGESYD 1062
Query: 1148 ----NDIYGV------------------------------------TNSGVECVINAQRH 1167
ND G+ ++GV I +
Sbjct: 1063 QAIRNDETGLWQCPFCQQDNFPELSEVWNHFDSGSCPGQAIGVKTRLDNGVTGFIPTKFL 1122
Query: 1168 IGAQLKRPAEEVYEIGKTYPAKVIYIDYDNISCEVSLLEHDIRRQYVPIHYSKDPSIWNV 1227
+KRP E V ++G T +++ ID + S +++ D+ + KD + ++
Sbjct: 1123 SDKVVKRPEERV-KVGMTVHCRIMKIDIEKFSADLTCRTSDLMDRNNEWKLPKD-TYYDF 1180
Query: 1228 EQEMKDQEIEKKLALEEARAKRTHRVINHPYYGNFTGPQAEDYLRSRERGDFVIRQSSRG 1287
+ E D + E+ + ++ R RVI HP + N QAE + + ++GD +IR SS+G
Sbjct: 1181 DAEAADHKQEEDMKRKQQRTTYIKRVIAHPSFHNINFKQAEKMMETMDQGDVIIRPSSKG 1240
Query: 1288 DDHLAITWKLDKDLFQHVDILEKDKENPLALGKTLIVEDQKYHDLDQIIVEYLQNKVRLL 1347
++HL +TWK+ ++QHVD+ E+ KEN +LG TL + +++ DLD+I+ Y+Q
Sbjct: 1241 ENHLTVTWKVSDGIYQHVDVREEGKENAFSLGATLWINSEEFEDLDEIVARYVQPMASFA 1300
Query: 1348 NEITSNEKFKK---GTKKEVIKFIEDYSKVNPNRSVYYFSFNYEHPGWFYLMFKINAQSQ 1404
++ +++ ++ G +K++ + + K P Y+ E PG F L ++ + +
Sbjct: 1301 RDLLNHKYYQDCSGGDRKKLEELLIKTKKEKPTFIPYFICACKELPGKFLLGYQPRGKPR 1360
Query: 1405 LYVWNVKLTHTGFFLVNYNYPTVIQLCNGFK 1435
+ V +T GF +PTV L FK
Sbjct: 1361 IEY--VTVTPEGFRYRGQIFPTVNGLFRWFK 1389
>7290693 [A] KOG1856 Transcription elongation factor SPT6
Length = 1831
Score = 290 bits (742), Expect = 1e-77
Identities = 291/1271 (22%), Positives = 521/1271 (40%), Gaps = 204/1271 (16%)
Query: 290 KRKKKLTLQDIYDLQDLKKNLLTEEDMNIRKADIPERYQELRTGLKNYGKLSPEDLELEK 349
K+ K T+ DIY+ +LK+ T+ D IRK DIPER Q + + S E L+LE
Sbjct: 256 KKVVKKTIFDIYEPSELKRGHFTDMDNEIRKTDIPERMQLREVPVTPVPEGSDE-LDLEA 314
Query: 350 NWISDKIAVDKNFDADYDTTEFKEA----------IGNAINFIQQENLEVSFIYAYRRNY 399
WI K A K+ ++ + E +E I + FI+ + LEV FI YR+ Y
Sbjct: 315 EWIY-KYAFCKHTVSEQEKPESREKMRKPPTTVNKIKQTLEFIRNQQLEVPFIAFYRKEY 373
Query: 400 ISSRSKDGFVLIEDDLWDIVFYDTEFHSIIYKRDYVKTFYEKL----------DIHDPIV 449
+ L DDLW + +YD + + ++ +K +EK+ D P+
Sbjct: 374 VKPE------LNIDDLWKVYYYDGIWCQLNERKRKLKVLFEKMRQFQLDTLCADTDQPVP 427
Query: 450 DE--------YFSNQSMTELNSLQDIYDYVEFKYAQEINDVLLSTQQDATSK-------- 493
D+ + + + L+D++ Y Y+ E+ + ++ A +
Sbjct: 428 DDVRLILDSDFERLADVQSMEELKDVHMYFLLNYSHELPRMQAEQRRKAIQERREAKARR 487
Query: 494 ---------------------------------KHLKNSS-YEKFKASALYQAINDTGIT 519
K NSS Y F+ + + G+T
Sbjct: 488 QAAAAENGDDAAEAIVVPEPEDDDDPELIDYQLKQASNSSPYAVFRKAGICGFAKHFGLT 547
Query: 520 AEQVGENISAEHQLHPVVDHPSLKPTDSVANILEGPEAKDLQIFSQNPKLALETIEKYYA 579
EQ EN+ +Q + + S+ PT+ L ++ + + A
Sbjct: 548 PEQYAENLRDNYQRNEITQE-SIGPTELAKQYLSPRFMTTDEV--------IHAAKYVVA 598
Query: 580 LELSKNPKVRQKIRDDFYKYYIVDVALTSKGRKEIQRGSPYEDIKYALGRTPAHFRSEPD 639
+L++ P +R+ +R+ ++ +++ T G I SP +KY + + +
Sbjct: 599 RQLAQEPLLRKTMREVYFDRARINIRPTKNGMVLIDENSPVYSMKYVAKKPVSDLFGDQF 658
Query: 640 VFLRMLEAESL----HLMNIQIHVSSQDQYTNHLFQTSL--ETSNTSEIASEWNSFRRDA 693
+ L M E E L L + + + +++ ++ + ++ EWN R +
Sbjct: 659 IKLMMAEEEKLLEITFLEEFEGNACANGTPGDYVEESKALYQLDQFAKHVQEWNKLRAEC 718
Query: 694 FDSALNK-VFSDVSQEIKDELKKTCLRLVTKSVRHQFMFKLDQAPFIPN----------- 741
AL K V D+ +E++ L + + V +S + L AP+ P
Sbjct: 719 VQLALQKWVIPDLIKELRSTLHEEAQQFVLRSCTGKLYKWLKVAPYKPQLPPDFGYEEWS 778
Query: 742 ------------PKDPKIPRVLTITCGQGKFGSDAIIAVYLNRKTEFVRDYKIVENPFDR 789
D + +T +G + L RK + + K + R
Sbjct: 779 TLRGIRVLGLAYDPDHSVAAFCAVTTVEGDISDYLRLPNILKRKNSYNLEEKAQKLADLR 838
Query: 790 KEPELFENALDDIIQHCQPNVIGINGPNPSTQRLYXXXXXXXXXXXXXDNRGSHVPVIYV 849
K L D I+ +P+++ I + Q + + + + V +
Sbjct: 839 K--------LSDFIKMKKPHIVVIGAESRDAQNIQADIKEILHELETSE-QFPPIEVEII 889
Query: 850 EDEVAVRYQSSERAAQEFPSKPTLVKYCIALGRYIHSPLLEYANL--TNEEXXXXXXXXX 907
++E+A Y +S++ +F P L+K +L R + PL+EY+ L ++E
Sbjct: 890 DNELAKIYANSKKGESDFKEYPPLLKQAASLARKMQDPLVEYSQLCDADDEILCLRYHPL 949
Query: 908 XXXXTRELFLQALETSFVDIVNLVGIEVNKATDNHYYAKALRYIAGFGRRKSADFLESLQ 967
RE L+ L F++ + VG+++N N L+YI G G RK L+ L+
Sbjct: 950 QERVPREQLLEQLSLQFINRTSEVGLDINLMVQNSRTINLLQYICGLGPRKGQALLKLLK 1009
Query: 968 RLNEPLLARQQLITHDILTKTIFMNSAAFLYI---SWNEKNQRYEDLEHDQLDGTRIHPE 1024
+ N+ L R QL+T L +F+N + F+ I S + + Y ++ LDG+R+HPE
Sbjct: 1010 QSNQRLENRTQLVTVCHLGPRVFINCSGFIKIDTSSLGDSTEAYVEV----LDGSRVHPE 1065
Query: 1025 DYHLATKVAADALEFDPDAIAEKEEQGTMSEFIELLREDPDRRTKLESLNLEAYAEELEK 1084
Y A K+A DA+E+D + E G + E +E P+R L+ L+L+A+A ELE+
Sbjct: 1066 TYEWARKMAIDAMEYDDE---ETNPAGALEEILE----SPER---LKDLDLDAFAVELER 1115
Query: 1085 NTGQRKLNNLNTIVLELLEGFEELRNDFHPLHGDEVFKSLTGESEKTFFKG-CII----- 1138
K L I EL +++ R + +E+F LT E+ +F+ G C+
Sbjct: 1116 QGFGSKSITLYDIRNELSCLYKDYRTPYTKPSAEELFDMLTKETPDSFYVGKCVTAMVTG 1175
Query: 1139 ---------------PVRVER-------FRHNDIY--------------------GVT-- 1154
PVR++ F H D + GV
Sbjct: 1176 FTYRRPQGDQLDSANPVRLDSNESWQCPFCHKDDFPELSEVWNHFDANACPGQPSGVRVR 1235
Query: 1155 -NSGVECVINAQRHIGAQLKRPAEEVYEIGKTYPAKVIYIDYDNISCEVSLLEHDIRRQY 1213
+G+ I+ + Q++ P E V + + ++I ID D S E S D++
Sbjct: 1236 LENGLPGFIHIKNLSDRQVRNPEERV-RVSQMIHVRIIKIDIDRFSVECSSRTADLKDVN 1294
Query: 1214 VPIHYSKDPSIWNVEQEMKDQEIEKKLALEEARAKRTHRVINHPYYGNFTGPQAEDYLRS 1273
+D V +E ++++ A R RVI HP + N + + L
Sbjct: 1295 NEWRPRRDNYYDYVTEEQDNRKVSDAKARALKRKIYARRVIAHPSFFNKSYAEVVAMLAE 1354
Query: 1274 RERGDFVIRQSSRGDDHLAITWKLDKDLFQHVDILEKDKENPLALGKTLIVEDQKYHDLD 1333
++G+ +R SS+ DHL TWK+ D+FQH+D+ E+ KEN +LG++L + +++ DLD
Sbjct: 1355 ADQGEVALRPSSKSKDHLTATWKVADDIFQHIDVREEGKENDFSLGRSLWIGTEEFEDLD 1414
Query: 1334 QIIVEYLQNKVRLLNEITSNEKFKKG------TKKEVI-KFIEDYSKVNPNRSVYYFSFN 1386
+II ++ E+ + +K +++V+ K + + +P + Y+F+ +
Sbjct: 1415 EIIARHIMPMALAARELIQYKYYKPNMVTGDENERDVMEKLLREEKANDPKKIHYFFTAS 1474
Query: 1387 YEHPGWFYLMF 1397
PG F L +
Sbjct: 1475 RAMPGKFLLSY 1485
>At1g65440 [A] KOG1856 Transcription elongation factor SPT6
Length = 1703
Score = 280 bits (716), Expect = 1e-74
Identities = 304/1196 (25%), Positives = 511/1196 (42%), Gaps = 140/1196 (11%)
Query: 286 GIDSKRKKKLTLQDIYDLQDLKKNLLTEEDMNIRKADIPERYQ--ELRTGLKNYGKLSPE 343
G+ S ++ + L+D ++ L + +T D IR+ DIPER Q E TG ++S
Sbjct: 288 GLASNQRMERRLEDEFEPTVLSEKYMTGNDDEIRQLDIPERMQISEESTGSPPVDEIS-- 345
Query: 344 DLELEKNWISDKIAVD-KNFDADYDTTEF---KEAIGNAINFIQQENLEV--SFIYAYRR 397
+E E NWI ++A + D +D F K+ I + + LEV SF YR+
Sbjct: 346 -IEEESNWIYAQLASQLRESDGTFDGRGFSVNKDDIAKFLELHHVQKLEVLDSFSPMYRK 404
Query: 398 NYISSRSKDGFVLIEDDLWDIVFYDTEFHSIIY-----KRDYVKTFYEKLDIHDPIVDEY 452
S G D +T++H + + + ++ K+ +H Y
Sbjct: 405 EQCRSLLDTGDF---DGANQGKKPETKWHKVFWMIHDLDKKWLLLRKRKMALHGYYTKRY 461
Query: 453 FSNQ----SMTELNSLQDIYDYV--EFKYAQ---EINDVLLSTQ----------QDATSK 493
T LN Q +++ V K A+ E++DV + K
Sbjct: 462 EEESRRVYDETRLNLNQYLFESVIKSLKVAETEREVDDVDSKFNLHFPPGEIGVDEGQYK 521
Query: 494 KHLKNSSYEKFKASALYQAINDTGITAEQVGENISAEHQLHPVVDHPSLKPTDSVANILE 553
+ + S Y + L++ N G +AEQ+G +S E K D + + E
Sbjct: 522 RPKRKSQYSICSKAGLWEVANKFGYSAEQLGLALSLE------------KLVDELEDAKE 569
Query: 554 GPE--AKD-LQIFSQNPKLALETIEKYYALELSKNPKVRQKIRDDFYKYYIVDVALTSKG 610
PE AK+ + +N L+ A+E+S P V++ +R + + +V + T+ G
Sbjct: 570 TPEEMAKNFVCAMFENSLAVLKGARHMAAVEISCEPSVKKYVRGIYMENAVVSTSPTADG 629
Query: 611 RKEIQRGSPYEDIKYALGRTPAHFRSEPDVFLRMLEAESLHLMNIQIHVSSQDQYTNHLF 670
I + IK+ + + F + ++ E E L +Q+ + Y N L
Sbjct: 630 NTVIDSFHQFSGIKWLREKPLSKFEGAQWLLIQKGEEEKL----LQVTFKLPENYMNRLI 685
Query: 671 QTSLE---TSNTSEIASEWNSFRRDAFDSALNK-VFSDVSQEIKDELKKTCLRLVTKSVR 726
E + S+ A WN R+ + AL+ + + +E + L +
Sbjct: 686 SDCNEHYLSVGVSKYAQLWNEQRKLILEDALHAFLLPSMEKEARSLLTSRAKSRLLSEYG 745
Query: 727 HQFMFKLDQAPFIPNPKDPKI-----PRVLTITCGQGKFGS------------DAIIAVY 769
K+ P+ D + PRV+ G GK + D + A
Sbjct: 746 QALWNKVSAGPYQKKEMDINLDEEAAPRVMACCWGPGKPPNTFVMLDSSGEVLDVLYAGS 805
Query: 770 LNRKTEFVRDYKIVENPFDRKEPELFENALDDIIQHCQPNVIGINGPNPSTQRLYXXXXX 829
L +++ V D + ++ DR L ++ H QP+V+ + N S RL
Sbjct: 806 LTSRSQNVNDQQRKKSDQDR--------VLKFMMDH-QPHVVALGAVNLSCTRLKDDIYE 856
Query: 830 XXXXXXXXDNRG-----SHVPVIYVEDEVAVRYQSSERAAQEFPSKPTLVKYCIALGRYI 884
R + ++YV++ + Y++S + ++ P + V+ +ALGRY+
Sbjct: 857 VIFQMVEEKPRDVGHGMDDLSIVYVDESLPRLYENSRISGEQLPQQSGNVRRAVALGRYL 916
Query: 885 HSPLLEYANLTNEEXXXXXXXXXXXXXTRELFLQ------ALETSFVDIVNLVGIEVNKA 938
+PL A L E FLQ +E VDI N VGI++N A
Sbjct: 917 QNPLAMVATLCGP----GREILSWKLHPLENFLQLDEKYGMVEQVMVDITNQVGIDINLA 972
Query: 939 TDNHYYAKALRYIAGFGRRKSADFLESLQRLNEPLLARQQLITHDILTKTIFMNSAAFLY 998
+ ++ L++I+G G RK+A SL R + R+ LI H L K +F+N+A FL
Sbjct: 973 ASHDWFFSPLQFISGLGPRKAASLQRSLVRAGS-IFVRKDLIMHG-LGKKVFVNAAGFLR 1030
Query: 999 ISWN---EKNQRYEDLEHDQLDGTRIHPEDYHLATKVAADALEFDPDAIAE-KEEQGTMS 1054
I + + ++ DL LD TRIHPE Y LA ++A D +D D + +++ +
Sbjct: 1031 IRRSGLAASSSQFIDL----LDDTRIHPESYSLAQELAKDI--YDEDVRGDSNDDEDAIE 1084
Query: 1055 EFIELLREDPDRRTKLESLNLEAYAEELEKNTGQRKLNNLNTIVLELLEGFEELRNDFHP 1114
IE +R DR L + L+ Y L + K + I+ EL GF++ R F
Sbjct: 1085 MAIEHVR---DRPASLRKVVLDEY---LASKKRENKKETYSNIIRELSCGFQDWRIPFKE 1138
Query: 1115 LHGDEVFKSLTGESEKTFFKGCIIPVRVERFRHNDIYGVTNSGVECVINAQ--RHIGAQL 1172
DE F ++GE+E T +G I+ V R ++ V +SG+ ++ + G +
Sbjct: 1139 PSPDEEFYMISGETEDTIAEGRIVQASVRRLQNGRAICVLDSGLTGMLMKEDFSDDGRDI 1198
Query: 1173 KRPAEEVYEIGKTYPAKVIYIDYDNISCEVSLLEHDIR------RQYVPIHYSKDPSIWN 1226
A+++ E G K+ I + E ++R Q V +Y +D N
Sbjct: 1199 VDLADQLKE-GDILTCKIKSIQKQRYQVFLICKESEMRNNRHQHNQNVDAYYHEDR---N 1254
Query: 1227 VEQEMKDQEIEKKLALEEARAKRTHRVINHPYYGNFTGPQAEDYLRSRERGDFVIRQSSR 1286
Q +K++ ++K E R R+I HP + N T QA +YL ++ G+ ++R SSR
Sbjct: 1255 SLQLVKEKARKEK---ELVRKHFKSRMIVHPRFQNITADQATEYLSDKDFGESIVRPSSR 1311
Query: 1287 GDDHLAITWKLDKDLFQHVDILEKDKENP-----LALGKTLIVEDQKYHDLDQIIVEYLQ 1341
G + L +T K+ ++ H +I E KEN +GKTL + + + DLD+++ Y+
Sbjct: 1312 GLNFLTLTLKIYDGVYAHKEIAEGGKENKDITSLQCIGKTLTIGEDTFEDLDEVMDRYVD 1371
Query: 1342 NKVRLLNEITSNEKFKKGTKKEVIKFIEDYSKVNPNRSVYYFSFNYEHPGWFYLMF 1397
V L + + KF+KGTK EV + NP+R VY F ++EHPG F L +
Sbjct: 1372 PLVSHLKTMLNYRKFRKGTKSEVDDLLRIEKGENPSRIVYCFGISHEHPGTFILSY 1427
>At1g63210 [A] KOG1856 Transcription elongation factor SPT6
Length = 1197
Score = 263 bits (673), Expect = 1e-69
Identities = 271/1172 (23%), Positives = 508/1172 (43%), Gaps = 115/1172 (9%)
Query: 288 DSKRKKKLT--LQDIYDLQDLKKNLLTEEDMNIRKADIPERYQELRTGLKNYGKLSPEDL 345
D K +K+ L+D ++ L + +TE+D IRK D+PER Q + G +S +D+
Sbjct: 37 DLKYNEKIERKLEDEFEPMVLSEKYMTEKDDEIRKLDVPERMQIFEEAI---GIVSLDDM 93
Query: 346 EL--EKNWISDKIAVDKNFDADYDTTEFKEAIGNAINFIQQENLEVSFIYAYRRNYISSR 403
+ E NWI ++ ++ + K+ I + + LE+ FI YR+ S
Sbjct: 94 SIQEESNWIYARLLQEQGQGCLIN----KDDIVKFLEMFHVQKLEIPFIAMYRKEQCRSL 149
Query: 404 SKDGFVLIEDDLWDIVF-----YDTEFHSIIY-----KRDYVKTFYEKLDIHDPIVDEYF 453
+DD F +T++H +++ R +V K + +
Sbjct: 150 LDSS----DDDHDGSDFNLDKKLETKWHKVLWMIQDLDRKWVLLRKRKTALFGYYTKRFE 205
Query: 454 SNQSMTELN-SLQD--IYDYVEFKYAQEINDVLLSTQ--------QDATSKKHLKNSSYE 502
M++LN SL + I + +E++DV + K+ + S Y
Sbjct: 206 EETCMSDLNKSLFESVIKSLQAAETEREVDDVDSKFNLHFPHCEIDEGQYKRPNRKSQYS 265
Query: 503 KFKASALYQAINDTGITAEQVGENISAEHQLHPVVDHPSLKPTDSVANILEGPEAKDLQI 562
+ + N G +AEQ+G +S E ++ P + N + +
Sbjct: 266 ICSKFGIKEFANKFGYSAEQLGLALSLEKVFVDELEDAKKTPEEMALNY-------ECAM 318
Query: 563 FSQNPKLALETIEKYYALELSKNPKVRQKIRDDFYKYYIVDVALTSKGRKEIQRGSPYED 622
F + + L+ A+E+S P +R+ +R F + +V + T G I +
Sbjct: 319 FGDS-QAVLKGARHMAAVEISCEPSIRKYVRGIFMENAVVSTSPTPDGNVVIDSFHRFSA 377
Query: 623 IKYALGRTPAHFRSEPDVFLRMLEAESLHLMNIQIHVSSQDQYTNHLFQTSLETSNTSEI 682
+K+ + F + ++ E E L + ++ + ++ + + L S+
Sbjct: 378 VKWLSEKPLRKFDGVQWLLIQKAEEEKLLQVTFKLPENQMNRIISECSEHYLSV-GVSKY 436
Query: 683 ASEWNSFRRDAFDSALNK-VFSDVSQEIKDELKKTCLRLVTKSVRHQFMFKLDQAPFIPN 741
A WN R+ + A++ V + +E + L + K+ P+ N
Sbjct: 437 AQLWNEQRKLILEDAVHGFVLPSMEKEARSLLTSRAKTQLLSEYGQVLWNKVSSGPYRRN 496
Query: 742 ---PKDPKIPRVLTITCGQGKFGSDAIIAVYLNRKTEFVRDYKI---VENPFDRKEPELF 795
++ PRVL G G + ++ + + I + D+K ++
Sbjct: 497 NNTSEEEAAPRVLACCWGPGNPETTFVMLDSSGELVDVLYSGSIGLRSRDVNDQKRKKMD 556
Query: 796 ENALDDIIQHCQPNVIGINGPNPSTQRLYXXXXXXXXX------XXXXDNRGSHVPVIYV 849
++ I+ QP+V+ + N S RL D+R P++Y
Sbjct: 557 QDRFLKFIRDHQPDVLALAAVNLSCVRLKDEIYEAIFQMVEELPLNYVDDRIYDFPLVYA 616
Query: 850 EDEVAVRYQSSERAAQEFPSKPTLVKYCIALGRYIHSPLLEYANL--TNEEXXXXXXXXX 907
++ + Y++S ++++ P + +VK ++LGRY+ +PL + L +
Sbjct: 617 DESLPRLYENSRISSEQLPQQAGIVKRAVSLGRYLQNPLAMISTLCGPGRDILSWKLHSF 676
Query: 908 XXXXTRELFLQALETSFVDIVNLVGIEVNKATDNHYYAKALRYIAGFGRRKSADFLESLQ 967
+ + +E VDI N VGI++N A + + L++++G G RK+A +SL
Sbjct: 677 QDFLDPDEKYEMVEQVMVDITNQVGIDINLAASHEWLFSPLQFVSGLGPRKAASLQKSLV 736
Query: 968 RLNEPLLARQQLITHDILTKTIFMNSAAFLYISWNE---KNQRYEDLEHDQLDGTRIHPE 1024
R + R++LI H I K +F+N+A FL I + + ++ DL LD TRIHPE
Sbjct: 737 RAGS-IFVRKELINHGI-GKKVFVNAAGFLRIRRSGLACSSSQFIDL----LDDTRIHPE 790
Query: 1025 DYHLATKVAADALEFDPDAIAEKEEQGTMSEFIELLREDPDRRTKLESLNLEAYAEELEK 1084
Y LA ++A D D +E + IE +R++P L + L+ Y L
Sbjct: 791 SYGLAQELAKDVYAHD---TVRGDEDDAIEMAIEHVRDEP---ASLRKIVLDEY---LRS 841
Query: 1085 NTGQRKLNNLNTIVLELLEGFEELRNDFHPLHGDEVFKSLTGESEKTFFKGCIIPVRVER 1144
+ K + I+ EL GF++ R+ F + DE F ++GE+++T +G I+ V++
Sbjct: 842 KNQENKKETYSLIMRELSCGFQDWRSLFKEVDSDEEFYMISGETKETIGEGRIVQATVKK 901
Query: 1145 FRHNDIYGVTNSGVECVINAQRHIGAQLKRPAEEVYEIGKTYPAKVIYIDYDNISCEVSL 1204
VT+ +CV++ G LK E+ + G+ +D N CE +
Sbjct: 902 --------VTSGKAKCVLDCGLP-GILLK---EDYSDDGRD------IVDLSNKLCEGDI 943
Query: 1205 LEHDIR-----RQYVPI-----HYSKDPSIWNVE----QEMKDQEIEKKLALEEARAKRT 1250
+ ++ R +V + K ++ +V+ +E ++ + +K + + + +
Sbjct: 944 VTCKVKSILKQRYHVLLVCKESEMRKHRNLGDVDDYYHEEKRNSVLIEKEKVPKEKKQFK 1003
Query: 1251 HRVINHPYYGNFTGPQAEDYLRSRERGDFVIRQSSRGDDHLAITWKLDKDLFQHVDILEK 1310
R+I HP + N T QA YL + G+ ++R SSRG +HL + K+ +++ + +I+E
Sbjct: 1004 SRMIVHPRFQNITAEQATVYLSDKNIGESIVRPSSRGLNHLTLMIKISDNVYANKEIIEG 1063
Query: 1311 DKENP-----LALGKTLIVEDQKYHDLDQIIVEYLQNKVRLLNEITSNEKFKKGTKKEVI 1365
+KEN +GKTL + ++ + DLD+++ Y+ V L + ++ KF+ GTK E+
Sbjct: 1064 EKENKDIVSLQRIGKTLKIGNETFEDLDEVMDRYVDPLVTHLMTMLNHRKFRTGTKSEID 1123
Query: 1366 KFIEDYSKVNPNRSVYYFSFNYEHPGWFYLMF 1397
+ VNP VY F ++EHPG F L +
Sbjct: 1124 DLLRVEKGVNPKMVVYSFGVSHEHPGSFILSY 1155
>CE13120 [A] KOG1856 Transcription elongation factor SPT6
Length = 1521
Score = 245 bits (626), Expect = 3e-64
Identities = 290/1280 (22%), Positives = 527/1280 (40%), Gaps = 185/1280 (14%)
Query: 293 KKLTLQDIYDLQDLKKNLLTEEDMNIRKADIPERYQELRTGLKNYGKLSPEDLELEKNWI 352
KK TL + + ++ + L D I K D+PER+Q RT + + ++LE E WI
Sbjct: 251 KKSTLLESIEPSEIDRGFLLPGDKKIAKEDLPERFQLRRTPVT---EADDDELESEALWI 307
Query: 353 ------------------SDKIAVDKNFDADYDTTEFK---EAIGNAINFIQ--QENLEV 389
DK+ N D K ++I + FI+ + E
Sbjct: 308 IKYAFEEGTVTNQADLDQDDKLDCIMNLDPSVYEDRKKAVIKSIKKVLQFIRVRSNSFEP 367
Query: 390 SFIYAYRRNYISSRSKDGFVLIEDDLWDIVFYDTEFHSIIYKR----DYVKTFYEKLDIH 445
+FI YR+ I + +L ++LW + +D ++ + K+ D ++ E ++
Sbjct: 368 TFIGFYRKEDIDN------LLTMNNLWRVYDFDEKWCHLSEKKNKIYDLMRRMREYQELS 421
Query: 446 D-------PIVDEYFSNQSMTE-LNSLQDIYDYVEFKYAQEINDVL------LSTQQDAT 491
D PI D + E L L DI+ + Y ++D++ L+ +++
Sbjct: 422 DDLTAKRRPISDADLMDTKYAETLEQLTDIHANFQLLYGALLDDMIRWEKGRLTGEEEEQ 481
Query: 492 S-----KKHLKNSSYEKFKASALYQAINDTGITAEQVGENISAEHQLHPVVDHPSLKPTD 546
K ++N Y+ + + + G+TA+Q EN++ + H + P L
Sbjct: 482 EYRVKFKSSIRNDKYQMCVENGIGELAGRFGLTAKQFSENLNWKK--HDIEQDPMLP--- 536
Query: 547 SVANILEGPEAKDLQIFSQNPKLALETIEKYYALELSKNPKVRQKIRDDFYKYYIVDVAL 606
LE E FS + + L + A E+S+ P+VR +R +F + +
Sbjct: 537 -----LEAAEEYVCPAFSDSD-MVLNGAKFMLAKEISRQPQVRHSVRQEFRQSAHFWIKP 590
Query: 607 TSKGRKEIQRGSPYEDIKYALGRTPAHFRSEPDVFLRMLEAESLHLMNIQIHVSSQDQYT 666
T KGR I + P D +Y + +E +F + + L + I ++ S +DQ +
Sbjct: 591 TKKGRDTIDQTHPLYDKRYIKSKPVRSLTAEEFLFYHKAKEDGLVDVLI-MYESEEDQDS 649
Query: 667 N------HLFQTSLETSNTSEIASEWNSFRRDAFDSALNKVFSDVSQEIKDELKKTCLR- 719
N +L + + +E +WNS R + + A+ ++ ++DEL T L
Sbjct: 650 NNYLVNKYLSDSIFQKDEYTENVEQWNSVRDECVNMAITEMLVPY---MRDELYNTILEE 706
Query: 720 ---LVTKSVRHQFMFKLDQAPFIPN---------PKDPKIPRVLTITC-----GQGKFG- 761
V K R +F ++ ++ ++P+ D R + C + FG
Sbjct: 707 AKTAVAKKCRKEFASRISRSGYLPDFDNNDDDDDGMDQHGARRIMAVCYPTERDEASFGV 766
Query: 762 ---SDAIIAVYLNRKTEFVRDYKIVENPFDRKEP-ELFENALDDIIQHCQPNVIGINGPN 817
+ I YL R + N + E +LF+ +Q +P+ IG+N +
Sbjct: 767 MVDENGAIVDYLRMVHFTKRTFGGGNNGLRKAESMDLFKK----FVQRRKPHAIGLNIED 822
Query: 818 PSTQRLYXXXXXXXXXXXXXDNRGSHVPVIYVEDEVAVRYQSSERAAQEFPSKPTLVKYC 877
RL + +PV +++E A Y S + E P P ++
Sbjct: 823 MECTRLKRDLEEAVADLFSQNLIYKPIPVFLMDNEAAKVYMRSNVSLAENPDHPPTLRQA 882
Query: 878 IALGRYIHSPLLEYANLTN--EEXXXXXXXXXXXXXTRELFLQALETSFVDIVNLVGIEV 935
++L R + P+ EYA+L N E+ +E L V+ VN G+++
Sbjct: 883 LSLARLLLDPIPEYAHLWNIDEDIFCLSLHPLQRDIDQEQLALVLSHELVNKVNEEGVDI 942
Query: 936 NKATDNHYYAKALRYIAGFGRRKSADFLESLQRLNEPLLARQQLITHDILTKTIFMNSAA 995
NK + +Y L++ G G RK+ D L+S++ + + +R +L+ L +FMN A
Sbjct: 943 NKCAEFPHYTNMLQFTCGLGPRKATDLLKSIKANDNLIESRSKLVVGCKLGPKVFMNCAG 1002
Query: 996 FLYISW---NEKNQRYEDLEHDQLDGTRIHPEDYHLATKVAADALEFDPDAIAEKEEQGT 1052
F+ I +EK Y ++ LDG+R+HPE Y A K+A DALE D A Q
Sbjct: 1003 FIKIDTIKVSEKTDAYVEV----LDGSRVHPETYEWARKMAVDALEVDDSADPTAALQEI 1058
Query: 1053 MSEFIELLREDPD-------------RRTKLESLNLEAYA------EELEKNTGQRKLNN 1093
M L D D +++ L ++ E A + ++ TG+ +
Sbjct: 1059 MESPDRLRDLDLDAFADELSRQGFGEKKSTLYDISSELSARYKDLRQPFQEPTGELLYDL 1118
Query: 1094 LNTIVLELLEGFEEL---------------RNDFHPLHGDE------------------V 1120
L E+ EG + L + P G++ +
Sbjct: 1119 LARSGKEIREGAKVLGTVQSVQYRKVDKDAADSMLPDVGEDGLFTCPCCKSFTSSAPGGI 1178
Query: 1121 FKSLTGESEKTFFKGCIIPVRVERFRHNDIYGVTNSGVECVINAQRHIGAQLKRPAEEVY 1180
+ + G+S + G + +RV RF + N + + H+ L R
Sbjct: 1179 QEHMLGDSRQGGCPGTPVGIRV-RFDNGMTGFCPNKNI-----SSSHVDNPLTR-----V 1227
Query: 1181 EIGKTYPAKVIYIDYDNISCEVSLLEHDIRRQYVPIHYSKDPSIWNVEQEMKDQEIEKKL 1240
+I + Y KV+ +D + S +S D++ + S+ W+ Q D E+ K
Sbjct: 1228 KINQPYYFKVLKLDKERFSLFLSCKSSDLKEDDL----SQRDQYWDEHQYQADLELMKSE 1283
Query: 1241 ALEEARAK-RTHRVINHPYYGNFTGPQAEDYLRSRERGDFVIRQSSRGDDHLAITWKLDK 1299
+ ++ A R RVI HP + N + A L + + +IR S+ D L++TWK+
Sbjct: 1284 SKKKTEANTRVKRVIAHPNFHNVSYEAATKMLDEMDWSECIIRPSANKDSGLSVTWKICD 1343
Query: 1300 DLFQHVDILEKDKENPLALGKTLIVEDQKYHDLDQIIVEYLQNKVRLLNEITSNEK-FKK 1358
++ + + E K+ ++G+ L V + + DLD++I ++Q +++ +EIT+++ F
Sbjct: 1344 RVYHNFFVKESAKDQVFSIGRQLSVGGEDFEDLDELIARFVQPMIQISHEITTHKYFFPN 1403
Query: 1359 GTKKE---VIKFIEDYSKVNPNRSVYYFSFNYEHPGWFYLMFKINAQSQLYVWNVKLTHT 1415
GT +E V +F+ + K RS Y FS +Y P F + + + ++ K+
Sbjct: 1404 GTCEETEAVEQFVRE-KKRELGRSPYVFSASYRQPCQFCISYMFDNTERIRHEYFKIVPH 1462
Query: 1416 GFFLVNYNYPTVIQLCNGFK 1435
G + N+ T+ ++ FK
Sbjct: 1463 GVRFRHQNFDTLDRMMAWFK 1482
>7300889 [K] KOG1857 Transcription accessory protein TEX contains S1 domain
Length = 787
Score = 53.1 bits (126), Expect = 3e-06
Identities = 42/183 (22%), Positives = 80/183 (42%), Gaps = 13/183 (7%)
Query: 849 VEDEVAVRYQSSERAAQEFPSKPTLVKYCIALGRYIHSPLLEYANLTNEEXXXXXXXXXX 908
V + A Y S AA+EFP T + +++ R ++ PL EY + E
Sbjct: 618 VNENGASIYSCSNVAAKEFPKMDTNERSAVSIARRLNDPLSEYVKI---EPRHLGVGMYQ 674
Query: 909 XXXTRELFLQALETSFVDIVNLVGIEVNKATDNHYYAKALRYIAGFGRRKSADFLESLQR 968
++ +L + V+ VG+++N A+ L++IAG +K+ +E +
Sbjct: 675 HDVPEKILTASLNDVVSECVSYVGVDLNTAS-----LSVLKHIAGLSEKKAEKIIEH-RT 728
Query: 969 LNEPLLARQQLITHDILTKTIFMNSAAFLYISWNEKNQRYEDLEHDQLDGTRIHPEDYHL 1028
P R+ L++ + + F+ A F+ I + + + LD T +HPE Y++
Sbjct: 729 QKGPFKTRKDLLSVRSIGEKSFVQCAGFVRIEPRSVGGQLQ----NPLDCTWVHPESYNV 784
Query: 1029 ATK 1031
+
Sbjct: 785 VER 787
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.135 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,644,053
Number of Sequences: 60738
Number of extensions: 3307662
Number of successful extensions: 9999
Number of sequences better than 1.0e-05: 8
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 9931
Number of HSP's gapped (non-prelim): 17
length of query: 1460
length of database: 30,389,216
effective HSP length: 119
effective length of query: 1341
effective length of database: 23,161,394
effective search space: 31059429354
effective search space used: 31059429354
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)