ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII2903 good J KOG2646 Translation, ribosomal structure and biogenesis Ribosomal protein S5
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII2903 1003692 1002811 -294
(294 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YBR251w [J] KOG2646 Ribosomal protein S5 375 e-104
SPAC4G9.17c [J] KOG2646 Ribosomal protein S5 149 5e-36
Hs13994259 [J] KOG2646 Ribosomal protein S5 82 1e-15
At2g33800 [J] KOG0877 40S ribosomal protein S2/30S ribosomal pro... 74 2e-13
CE09115 [J] KOG2646 Ribosomal protein S5 58 2e-08
>YBR251w [J] KOG2646 Ribosomal protein S5
Length = 307
Score = 375 bits (963), Expect = e-104
Identities = 188/307 (61%), Positives = 232/307 (75%), Gaps = 13/307 (4%)
Query: 1 MFVRCFSSTARVFQ---QDLLKKYYSPELLKSISLADKVIPDNVEFKPQTNVEFSPPYLD 57
MF R S++ R Q + LL +YY LLKSI LA + IP++ +F+ NVEF+PPYLD
Sbjct: 1 MFKRQLSTSVRYLQHYDESLLSRYYPESLLKSIKLAQQTIPEDTKFRVSRNVEFAPPYLD 60
Query: 58 NFATLHPYWDYKPNSPHLHXXXX----XVFVQEMEKHP-----DLTPPVGSYLQTEGR-S 107
+F +HP+WDYKP PHLH +F + + P ++ PP S GR S
Sbjct: 61 DFTKIHPFWDYKPGMPHLHAQEENNNFSIFRWDQVQQPLPGEGNILPPGVSLPNDGGRKS 120
Query: 108 DIQNIANNIQLQTGFDAQHIARKLVMKPLILKMVSNQTAKGKIPSFYSLVVVGDKNGMVG 167
++A + QTG D +I RKL MKPL++K VSNQT KGKI SFY+LVVVGDKNGMVG
Sbjct: 121 KSADVAAGLHKQTGVDPDYITRKLTMKPLVMKRVSNQTGKGKIASFYALVVVGDKNGMVG 180
Query: 168 IGEGKSREDMAESIKKAHWDAVRNLKEVPRFEKRTIFEDIDYRYHGVKLFLRAAKPGFGL 227
+GEGKSRE+M+++I KAHWDAVRNLKE+PR+E RTI+ DID+RYHGVKL LR+AKPGFGL
Sbjct: 181 LGEGKSREEMSKAIFKAHWDAVRNLKEIPRYENRTIYGDIDFRYHGVKLHLRSAKPGFGL 240
Query: 228 RVNHVIYEICECAGIKDLSAKVYKSRNIMNIAKGTIDAITKSQKSIDEIALGRGKKIVDV 287
RVNHVI+EICECAGIKDLS KVYKSRN MNIAKGTI+A TK+QK++DE+ALGRGKK+VDV
Sbjct: 241 RVNHVIFEICECAGIKDLSGKVYKSRNDMNIAKGTIEAFTKAQKTLDEVALGRGKKLVDV 300
Query: 288 KKVYYSA 294
+KVYYS+
Sbjct: 301 RKVYYSS 307
>SPAC4G9.17c [J] KOG2646 Ribosomal protein S5
Length = 387
Score = 149 bits (376), Expect = 5e-36
Identities = 75/164 (45%), Positives = 114/164 (68%), Gaps = 2/164 (1%)
Query: 129 RKLVMKPLILKMVSNQTAKGKIPSFYSLVVVGDKNGMVGIGEGKSREDMAESIKKAHWDA 188
R L+ PL+ + V NQT KGKI S Y L VVG++NG+ G GEGK+ E + + K++ A
Sbjct: 223 RALMFVPLVRRRVVNQTRKGKIASMYVLTVVGNRNGVAGFGEGKA-ESYSLAYKQSCGRA 281
Query: 189 VRNLKEVPRFEKRTIFEDIDYRYHGVKLFLRAAKPGFGLRVNHVIYEICECAGIKDLSAK 248
V+N+ +PR++KRT++ I ++H V+L LR+ GFGLR N +++EIC CAGIKD+S +
Sbjct: 282 VKNMVYIPRYDKRTVYGVIHKKFHAVRLTLRSRPAGFGLRCNPILHEICRCAGIKDISGE 341
Query: 249 VYKSRNIMNIAKGTIDAITKSQKSIDEIALGRGKKIVDVKKVYY 292
+ S+N MN K +A+ +SQ+ ++IA+ RG+K VDV++ YY
Sbjct: 342 ILGSKNGMNTVKAMFEAL-QSQRLPEDIAMERGQKFVDVQREYY 384
>Hs13994259 [J] KOG2646 Ribosomal protein S5
Length = 430
Score = 81.6 bits (200), Expect = 1e-15
Identities = 50/155 (32%), Positives = 87/155 (55%), Gaps = 3/155 (1%)
Query: 136 LILKMVSNQTAK-GKIPSFYSLVVVGDKNGMVGIGEGKSREDMAESIKKAHWDAVRNLKE 194
L ++ V TAK G+ S LV VG+ G G GK+ + M ++ +KA AV +L
Sbjct: 223 LEVRNVFTMTAKEGRKKSIRVLVAVGNGKGAAGFSIGKATDRM-DAFRKAKNRAVHHLHY 281
Query: 195 VPRFEKRTIFEDIDYRYHGVKLFLRAAKPGFGLRVNHVIYEICECAGIKDLSAKVYKSRN 254
+ R+E TIF DI R+ + ++ G+GLR + I IC GIKD+ AKV S N
Sbjct: 282 IERYEDHTIFHDISLRFKRTHIKMKKQPKGYGLRCHRAIITICRLIGIKDMYAKVSGSIN 341
Query: 255 IMNIAKGTIDAITKSQKSIDEIALGRGKKIVDVKK 289
++++ +G +++ Q++ ++A +G +V++++
Sbjct: 342 MLSLTQGLFRGLSR-QETHQQLADKKGLHVVEIRE 375
>At2g33800 [J] KOG0877 40S ribosomal protein S2/30S ribosomal protein S5
Length = 303
Score = 73.9 bits (180), Expect = 2e-13
Identities = 46/144 (31%), Positives = 78/144 (53%), Gaps = 2/144 (1%)
Query: 138 LKMVSNQTAKGKIPSFYSLVVVGDKNGMVGIGEGKSREDMAESIKKAHWDAVRNLKEVPR 197
++ V+ GK F ++VVVGDK G VG+G K++E +A +++K+ DA RN+ +VP
Sbjct: 154 VRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVA-AVQKSAIDARRNIVQVPM 212
Query: 198 FEKRTIFEDIDYRYHGVKLFLRAAKPGFGLRVNHVIYEICECAGIKDLSAKVYKSRNIMN 257
+ T + Y K+ LR A PG G+ + + E AG+++ K S N +N
Sbjct: 213 TKYSTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALN 272
Query: 258 IAKGTIDAITKSQKSIDEIALGRG 281
A+ T+ A+ + + ++A RG
Sbjct: 273 NARATLAAV-QQMRQFRDVAQERG 295
>CE09115 [J] KOG2646 Ribosomal protein S5
Length = 418
Score = 57.8 bits (138), Expect = 2e-08
Identities = 44/155 (28%), Positives = 76/155 (48%), Gaps = 4/155 (2%)
Query: 136 LILKMVSNQT-AKGKIPSFYSLVVVGDKNGMVGIGEGKSR-EDMAESIKKAHWDAVRNLK 193
L +K SN T G++ + +LVV G+ G+ G GK+ +I A R L
Sbjct: 139 LEVKRTSNMTNVFGRVHTMSALVVTGNGRGLAGYAVGKAPIHRTTTAIINGMGMASRKLF 198
Query: 194 EVPRFEKRTIFEDIDYRYHGVKLFLRAAKPGFGLRVNHVIYEICECAGIKDLSAKVYKS- 252
V E RTI++D ++F + GFGL + + +ICE GIKD+ KV S
Sbjct: 199 HVELHEGRTIYQDFYAECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYVKVEGST 258
Query: 253 RNIMNIAKGTIDAITKSQKSIDEIALGRGKKIVDV 287
+N + + + + +Q++ ++A +G +V++
Sbjct: 259 KNYLALTHAFVTGLL-NQETHQQLAERKGLHVVEM 292
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.319 0.137 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,199,093
Number of Sequences: 60738
Number of extensions: 713510
Number of successful extensions: 1730
Number of sequences better than 1.0e-05: 5
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1720
Number of HSP's gapped (non-prelim): 5
length of query: 294
length of database: 30,389,216
effective HSP length: 106
effective length of query: 188
effective length of database: 23,950,988
effective search space: 4502785744
effective search space used: 4502785744
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)