ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII2917 suspect: HSP K KOG0527 Transcription HMG-box transcription factor
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII2917 1007487 1006309 -393
(393 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YPR065w [K] KOG0527 HMG-box transcription factor 75 1e-13
7302008 [K] KOG0527 HMG-box transcription factor 57 6e-08
Hs5032111 [K] KOG0527 HMG-box transcription factor 55 2e-07
7297454 [K] KOG0527 HMG-box transcription factor 54 3e-07
Hs5902108 [K] KOG0527 HMG-box transcription factor 53 7e-07
7294407 [K] KOG0527 HMG-box transcription factor 53 7e-07
Hs4759162 [K] KOG0527 HMG-box transcription factor 52 1e-06
CE05838 [K] KOG0527 HMG-box transcription factor 52 1e-06
Hs22043334 [K] KOG0527 HMG-box transcription factor 52 2e-06
CE28595 [K] KOG0527 HMG-box transcription factor 52 2e-06
Hs5174691 [K] KOG0527 HMG-box transcription factor 51 3e-06
HsM5902110 [K] KOG0527 HMG-box transcription factor 51 3e-06
Hs5902106 [K] KOG0527 HMG-box transcription factor 51 3e-06
Hs21264339 [K] KOG0527 HMG-box transcription factor 51 3e-06
7294410 [K] KOG0527 HMG-box transcription factor 50 4e-06
Hs4557853 [K] KOG0527 HMG-box transcription factor 50 6e-06
Hs10047084 [K] KOG0527 HMG-box transcription factor 50 6e-06
>YPR065w [K] KOG0527 HMG-box transcription factor
Length = 368
Score = 75.5 bits (184), Expect = 1e-13
Identities = 38/87 (43%), Positives = 54/87 (61%), Gaps = 11/87 (12%)
Query: 286 NAFILFRQHWHQQVFDQEKEKITTDTSQGTSKLGSFKANSQASRDIGRKWRSLPDSEKKY 345
NAFILFRQH+H+ + D+ T+QG NS S+ IG KW+ L +K +
Sbjct: 15 NAFILFRQHYHRILIDEW-------TAQGVE----IPHNSNISKIIGTKWKGLQPEDKAH 63
Query: 346 WLDLAKQEKEAHKKKYPDYKYLPTRKA 372
W +LA++EK H++KYP+YKY P RK+
Sbjct: 64 WENLAEKEKLEHERKYPEYKYKPVRKS 90
>7302008 [K] KOG0527 HMG-box transcription factor
Length = 449
Score = 56.6 bits (135), Expect = 6e-08
Identities = 22/51 (43%), Positives = 38/51 (74%)
Query: 324 NSQASRDIGRKWRSLPDSEKKYWLDLAKQEKEAHKKKYPDYKYLPTRKALR 374
NS+ S+ +G+ W++L DS+KK +++ A++ + HK+++PDYKY P RK R
Sbjct: 24 NSELSKSLGKLWKNLKDSDKKPFMEFAEKLRMTHKQEHPDYKYQPRRKKAR 74
>Hs5032111 [K] KOG0527 HMG-box transcription factor
Length = 443
Score = 55.1 bits (131), Expect = 2e-07
Identities = 23/48 (47%), Positives = 34/48 (69%)
Query: 324 NSQASRDIGRKWRSLPDSEKKYWLDLAKQEKEAHKKKYPDYKYLPTRK 371
NS+ S+ +G W+ L D+EK+ ++D AK+ + H K+YPDYKY P RK
Sbjct: 166 NSEISKRLGADWKLLTDAEKRPFIDEAKRLRAVHMKEYPDYKYRPRRK 213
>7297454 [K] KOG0527 HMG-box transcription factor
Length = 572
Score = 54.3 bits (129), Expect = 3e-07
Identities = 22/48 (45%), Positives = 35/48 (72%)
Query: 324 NSQASRDIGRKWRSLPDSEKKYWLDLAKQEKEAHKKKYPDYKYLPTRK 371
NS+ S+ +G +W+ L +SEK+ ++D AK+ + H K++PDYKY P RK
Sbjct: 206 NSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVHMKEHPDYKYRPRRK 253
>Hs5902108 [K] KOG0527 HMG-box transcription factor
Length = 276
Score = 53.1 bits (126), Expect = 7e-07
Identities = 22/48 (45%), Positives = 35/48 (72%)
Query: 324 NSQASRDIGRKWRSLPDSEKKYWLDLAKQEKEAHKKKYPDYKYLPTRK 371
NS+ S+ +G +W+ L +SEK+ ++D AK+ + H K++PDYKY P RK
Sbjct: 35 NSEISKRLGAEWKLLTESEKRPFIDEAKRLRAMHMKEHPDYKYRPRRK 82
>7294407 [K] KOG0527 HMG-box transcription factor
Length = 382
Score = 53.1 bits (126), Expect = 7e-07
Identities = 22/48 (45%), Positives = 35/48 (72%)
Query: 324 NSQASRDIGRKWRSLPDSEKKYWLDLAKQEKEAHKKKYPDYKYLPTRK 371
NS+ S+ +G +W+ L +SEK+ ++D AK+ + H K++PDYKY P RK
Sbjct: 169 NSEISKRLGAEWKLLAESEKRPFIDEAKRLRALHMKEHPDYKYRPRRK 216
>Hs4759162 [K] KOG0527 HMG-box transcription factor
Length = 240
Score = 52.4 bits (124), Expect = 1e-06
Identities = 21/48 (43%), Positives = 35/48 (72%)
Query: 324 NSQASRDIGRKWRSLPDSEKKYWLDLAKQEKEAHKKKYPDYKYLPTRK 371
NS+ S+ +G +W+ L ++EK+ ++D AK+ + H K++PDYKY P RK
Sbjct: 35 NSEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQHMKEHPDYKYRPRRK 82
>CE05838 [K] KOG0527 HMG-box transcription factor
Length = 212
Score = 52.4 bits (124), Expect = 1e-06
Identities = 21/48 (43%), Positives = 34/48 (70%)
Query: 324 NSQASRDIGRKWRSLPDSEKKYWLDLAKQEKEAHKKKYPDYKYLPTRK 371
NS+ S+ +G +W+ L + EK+ ++D AK+ + H K++PDYKY P RK
Sbjct: 75 NSEISKRLGAEWKQLSEQEKRPFIDEAKRLRALHMKEHPDYKYRPRRK 122
>Hs22043334 [K] KOG0527 HMG-box transcription factor
Length = 317
Score = 52.0 bits (123), Expect = 2e-06
Identities = 21/48 (43%), Positives = 35/48 (72%)
Query: 324 NSQASRDIGRKWRSLPDSEKKYWLDLAKQEKEAHKKKYPDYKYLPTRK 371
NS+ S+ +G +W+ L ++EK+ ++D AK+ + H K++PDYKY P RK
Sbjct: 68 NSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRK 115
>CE28595 [K] KOG0527 HMG-box transcription factor
Length = 283
Score = 52.0 bits (123), Expect = 2e-06
Identities = 21/48 (43%), Positives = 34/48 (70%)
Query: 324 NSQASRDIGRKWRSLPDSEKKYWLDLAKQEKEAHKKKYPDYKYLPTRK 371
NS+ S+ +G +W+ L + EK+ ++D AK+ + H K++PDYKY P RK
Sbjct: 87 NSEISKRLGTEWKMLSEQEKRPFIDEAKRLRAIHMKEHPDYKYRPRRK 134
>Hs5174691 [K] KOG0527 HMG-box transcription factor
Length = 387
Score = 51.2 bits (121), Expect = 3e-06
Identities = 20/48 (41%), Positives = 35/48 (72%)
Query: 324 NSQASRDIGRKWRSLPDSEKKYWLDLAKQEKEAHKKKYPDYKYLPTRK 371
NS+ S+ +G +W+ + ++EK+ ++D AK+ + H K++PDYKY P RK
Sbjct: 78 NSEISKRLGAEWKVMSEAEKRPFIDEAKRLRALHMKEHPDYKYRPRRK 125
>HsM5902110 [K] KOG0527 HMG-box transcription factor
Length = 315
Score = 50.8 bits (120), Expect = 3e-06
Identities = 27/87 (31%), Positives = 47/87 (53%), Gaps = 16/87 (18%)
Query: 286 NAFILFRQHWHQQVFDQEKEKITTDTSQGTSKLGSFKANSQASRDIGRKWRSLPDSEKKY 345
NAF+++ QH +++ DQ + N++ S+ +GR+W+ L DSEK
Sbjct: 45 NAFMVWSQHERRKIMDQWPDM----------------HNAEISKRLGRRWQLLQDSEKIP 88
Query: 346 WLDLAKQEKEAHKKKYPDYKYLPTRKA 372
++ A++ + H YPDYKY P +K+
Sbjct: 89 FVREAERLRLKHMADYPDYKYRPRKKS 115
>Hs5902106 [K] KOG0527 HMG-box transcription factor
Length = 233
Score = 50.8 bits (120), Expect = 3e-06
Identities = 21/49 (42%), Positives = 34/49 (68%)
Query: 324 NSQASRDIGRKWRSLPDSEKKYWLDLAKQEKEAHKKKYPDYKYLPTRKA 372
NS+ S+ +G +W+ L + EK+ +++ AK+ + H + YPDYKY P RKA
Sbjct: 76 NSEISKRLGAQWKLLDEDEKRPFVEEAKRLRARHLRDYPDYKYRPRRKA 124
>Hs21264339 [K] KOG0527 HMG-box transcription factor
Length = 315
Score = 50.8 bits (120), Expect = 3e-06
Identities = 27/87 (31%), Positives = 47/87 (53%), Gaps = 16/87 (18%)
Query: 286 NAFILFRQHWHQQVFDQEKEKITTDTSQGTSKLGSFKANSQASRDIGRKWRSLPDSEKKY 345
NAF+++ QH +++ DQ + N++ S+ +GR+W+ L DSEK
Sbjct: 45 NAFMVWSQHERRKIMDQWPDM----------------HNAEISKRLGRRWQLLQDSEKIP 88
Query: 346 WLDLAKQEKEAHKKKYPDYKYLPTRKA 372
++ A++ + H YPDYKY P +K+
Sbjct: 89 FVREAERLRLKHMADYPDYKYRPRKKS 115
>7294410 [K] KOG0527 HMG-box transcription factor
Length = 388
Score = 50.4 bits (119), Expect = 4e-06
Identities = 20/48 (41%), Positives = 34/48 (70%)
Query: 324 NSQASRDIGRKWRSLPDSEKKYWLDLAKQEKEAHKKKYPDYKYLPTRK 371
NS+ S+ +G +W+ L + +K+ ++D AK+ + H K++PDYKY P RK
Sbjct: 148 NSEISKRLGAEWKLLTEGQKRPFIDEAKRLRALHMKEHPDYKYRPRRK 195
>Hs4557853 [K] KOG0527 HMG-box transcription factor
Length = 509
Score = 50.1 bits (118), Expect = 6e-06
Identities = 22/53 (41%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
Query: 324 NSQASRDIGRKWRSLPDSEKKYWLDLAKQEKEAHKKKYPDYKYLP-TRKALRN 375
N++ S+ +G+ WR L +SEK+ +++ A++ + HKK +PDYKY P RK+++N
Sbjct: 132 NAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKSVKN 184
>Hs10047084 [K] KOG0527 HMG-box transcription factor
Length = 520
Score = 50.1 bits (118), Expect = 6e-06
Identities = 20/48 (41%), Positives = 35/48 (72%)
Query: 324 NSQASRDIGRKWRSLPDSEKKYWLDLAKQEKEAHKKKYPDYKYLPTRK 371
N++ S+ +G+ WR L +SEK+ +++ A++ + HKK +PDYKY P R+
Sbjct: 203 NAELSKTLGKLWRLLSESEKRPFVEEAERLRVQHKKDHPDYKYQPRRR 250
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.315 0.130 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,332,180
Number of Sequences: 60738
Number of extensions: 789252
Number of successful extensions: 2598
Number of sequences better than 1.0e-05: 17
Number of HSP's better than 0.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2580
Number of HSP's gapped (non-prelim): 17
length of query: 393
length of database: 30,389,216
effective HSP length: 108
effective length of query: 285
effective length of database: 23,829,512
effective search space: 6791410920
effective search space used: 6791410920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)