ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII2956 good A KOG4206 RNA processing and modification Spliceosomal protein snRNP-U1A/U2B
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII2956 1018388 1018047 -114
(114 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YIR009w [A] KOG4206 Spliceosomal protein snRNP-U1A/U2B 95 1e-20
Hs4759156 [A] KOG4206 Spliceosomal protein snRNP-U1A/U2B 72 1e-13
SPBPI056 [A] KOG4206 Spliceosomal protein snRNP-U1A/U2B 71 2e-13
SPBC8D2.09c [A] KOG4206 Spliceosomal protein snRNP-U1A/U2B 71 2e-13
At2g30260 [A] KOG4206 Spliceosomal protein snRNP-U1A/U2B 69 8e-13
Hs4507123 [A] KOG4206 Spliceosomal protein snRNP-U1A/U2B 69 1e-12
7290566 [A] KOG4206 Spliceosomal protein snRNP-U1A/U2B 69 1e-12
CE07355 [A] KOG4206 Spliceosomal protein snRNP-U1A/U2B 68 2e-12
CE28597 [A] KOG4206 Spliceosomal protein snRNP-U1A/U2B 65 1e-11
At1g06960 [A] KOG4206 Spliceosomal protein snRNP-U1A/U2B 65 2e-11
SPBC4B4.07c [A] KOG4206 Spliceosomal protein snRNP-U1A/U2B 61 3e-10
At2g47580 [A] KOG4206 Spliceosomal protein snRNP-U1A/U2B 59 1e-09
At1g67770 [D] KOG4660 Protein Mei2 essential for commitment to m... 47 4e-06
>YIR009w [A] KOG4206 Spliceosomal protein snRNP-U1A/U2B
Length = 111
Score = 95.1 bits (235), Expect = 1e-20
Identities = 47/84 (55%), Positives = 65/84 (76%), Gaps = 1/84 (1%)
Query: 32 NTVYVKNLNDQIKIQTVRESLYMLFATYGEVIKVSMT-PKQRGQAFITFKSVDEANLALL 90
NT+YV LN++I +Q +R +L++LFAT+GEV+KVSM KQRGQAFIT +++D+A+LA +
Sbjct: 28 NTLYVSQLNEKINMQRLRVNLFLLFATFGEVLKVSMNFKKQRGQAFITMRTIDQASLAQI 87
Query: 91 SLKDELFFNKPLVLQFSKQTTTKL 114
SL E FF KPL ++FSK T L
Sbjct: 88 SLNGERFFGKPLKVEFSKSETKTL 111
>Hs4759156 [A] KOG4206 Spliceosomal protein snRNP-U1A/U2B
Length = 282
Score = 72.0 bits (175), Expect = 1e-13
Identities = 34/80 (42%), Positives = 57/80 (70%), Gaps = 2/80 (2%)
Query: 31 NNTVYVKNLNDQIKIQTVRESLYMLFATYGEV--IKVSMTPKQRGQAFITFKSVDEANLA 88
N+T+Y+ NLN++IK +++SLY +F+ +G++ I VS + K RGQAF+ FK V A A
Sbjct: 9 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNA 68
Query: 89 LLSLKDELFFNKPLVLQFSK 108
L S++ F++KP+ +Q++K
Sbjct: 69 LRSMQGFPFYDKPMRIQYAK 88
>SPBPI056 [A] KOG4206 Spliceosomal protein snRNP-U1A/U2B
Length = 216
Score = 71.2 bits (173), Expect = 2e-13
Identities = 35/78 (44%), Positives = 52/78 (65%), Gaps = 2/78 (2%)
Query: 32 NTVYVKNLNDQIKIQTVRESLYMLFATYGEVIKV--SMTPKQRGQAFITFKSVDEANLAL 89
NT+YV NLND+I +R +LYMLF+TYG V+ + TPK RGQA + F A +A+
Sbjct: 4 NTLYVNNLNDKINKNDLRTALYMLFSTYGTVVDIVALKTPKMRGQAHVVFFDPSAAAIAM 63
Query: 90 LSLKDELFFNKPLVLQFS 107
+LK+ +FF K + +Q++
Sbjct: 64 KALKNFIFFGKEMKIQYA 81
>SPBC8D2.09c [A] KOG4206 Spliceosomal protein snRNP-U1A/U2B
Length = 111
Score = 71.2 bits (173), Expect = 2e-13
Identities = 35/78 (44%), Positives = 52/78 (65%), Gaps = 2/78 (2%)
Query: 32 NTVYVKNLNDQIKIQTVRESLYMLFATYGEVIKV--SMTPKQRGQAFITFKSVDEANLAL 89
NT+YV NLND+I +R +LYMLF+TYG V+ + TPK RGQA + F A +A+
Sbjct: 4 NTLYVNNLNDKINKNDLRTALYMLFSTYGTVVDIVALKTPKMRGQAHVVFFDPSAAAIAM 63
Query: 90 LSLKDELFFNKPLVLQFS 107
+LK+ +FF K + +Q++
Sbjct: 64 KALKNFIFFGKEMKIQYA 81
>At2g30260 [A] KOG4206 Spliceosomal protein snRNP-U1A/U2B
Length = 232
Score = 69.3 bits (168), Expect = 8e-13
Identities = 32/80 (40%), Positives = 56/80 (70%), Gaps = 2/80 (2%)
Query: 31 NNTVYVKNLNDQIKIQTVRESLYMLFATYGEVIKVSM--TPKQRGQAFITFKSVDEANLA 88
N ++Y++NLN++IK + ++ SLY LF+ +G ++ V TPK RGQA++TF V A A
Sbjct: 9 NQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFSEVTAAGHA 68
Query: 89 LLSLKDELFFNKPLVLQFSK 108
+ +++ F++KP+ LQ++K
Sbjct: 69 VRQMQNFPFYDKPMRLQYAK 88
>Hs4507123 [A] KOG4206 Spliceosomal protein snRNP-U1A/U2B
Length = 225
Score = 68.9 bits (167), Expect = 1e-12
Identities = 32/80 (40%), Positives = 53/80 (66%), Gaps = 2/80 (2%)
Query: 31 NNTVYVKNLNDQIKIQTVRESLYMLFATYGEVIKV--SMTPKQRGQAFITFKSVDEANLA 88
N+T+Y+ N+ND+IK + ++ SLY LF+ +G V+ + T K RGQAF+ FK + + A
Sbjct: 6 NHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNA 65
Query: 89 LLSLKDELFFNKPLVLQFSK 108
L L+ F+ KP+ +Q++K
Sbjct: 66 LRQLQGFPFYGKPMRIQYAK 85
>7290566 [A] KOG4206 Spliceosomal protein snRNP-U1A/U2B
Length = 216
Score = 68.6 bits (166), Expect = 1e-12
Identities = 30/80 (37%), Positives = 56/80 (69%), Gaps = 2/80 (2%)
Query: 31 NNTVYVKNLNDQIKIQTVRESLYMLFATYGEVIKV--SMTPKQRGQAFITFKSVDEANLA 88
N T+Y+ NLN++IK + +++SLY +F+ +G+++ + T K RGQAF+ FK + A+ A
Sbjct: 6 NQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGSASNA 65
Query: 89 LLSLKDELFFNKPLVLQFSK 108
L +++ F++KP+ + +SK
Sbjct: 66 LRTMQGFPFYDKPMQIAYSK 85
>CE07355 [A] KOG4206 Spliceosomal protein snRNP-U1A/U2B
Length = 217
Score = 67.8 bits (164), Expect = 2e-12
Identities = 32/81 (39%), Positives = 55/81 (67%), Gaps = 2/81 (2%)
Query: 31 NNTVYVKNLNDQIKIQTVRESLYMLFATYGEVIKVS--MTPKQRGQAFITFKSVDEANLA 88
N+T+YV NLN+++K ++ SL+M+F +GE+I++ K RGQA I FK V A+ A
Sbjct: 7 NHTIYVNNLNEKVKKDELKRSLHMVFTQFGEIIQLMSFRKEKMRGQAHIVFKEVSSASNA 66
Query: 89 LLSLKDELFFNKPLVLQFSKQ 109
L +L+ F+ KP+ +Q++++
Sbjct: 67 LRALQGFPFYGKPMRIQYARE 87
>CE28597 [A] KOG4206 Spliceosomal protein snRNP-U1A/U2B
Length = 206
Score = 65.5 bits (158), Expect = 1e-11
Identities = 32/81 (39%), Positives = 53/81 (64%), Gaps = 2/81 (2%)
Query: 31 NNTVYVKNLNDQIKIQTVRESLYMLFATYGEVIKVS--MTPKQRGQAFITFKSVDEANLA 88
N+T+Y+ NLN++IKI +R+SL +F +GE++ V T K RGQA + FK + A+ A
Sbjct: 7 NSTLYINNLNEKIKIDELRKSLVAVFKQFGEIVSVMCFRTLKMRGQAHVIFKELPAASAA 66
Query: 89 LLSLKDELFFNKPLVLQFSKQ 109
+L F+ KP+ +QF+++
Sbjct: 67 REALNGFPFYEKPMRIQFARE 87
>At1g06960 [A] KOG4206 Spliceosomal protein snRNP-U1A/U2B
Length = 228
Score = 64.7 bits (156), Expect = 2e-11
Identities = 29/80 (36%), Positives = 56/80 (69%), Gaps = 2/80 (2%)
Query: 31 NNTVYVKNLNDQIKIQTVRESLYMLFATYGEVIKV--SMTPKQRGQAFITFKSVDEANLA 88
N ++Y+K++N++IK + ++ SLY LF+ +G ++ V TPK RGQA++ F V A+ A
Sbjct: 9 NQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTAASNA 68
Query: 89 LLSLKDELFFNKPLVLQFSK 108
+ +++ F++KP+ +Q++K
Sbjct: 69 VRQMQNFPFYDKPMRIQYAK 88
>SPBC4B4.07c [A] KOG4206 Spliceosomal protein snRNP-U1A/U2B
Length = 249
Score = 60.8 bits (146), Expect = 3e-10
Identities = 28/80 (35%), Positives = 53/80 (66%), Gaps = 2/80 (2%)
Query: 31 NNTVYVKNLNDQIKIQTVRESLYMLFATYGEVIKVSM--TPKQRGQAFITFKSVDEANLA 88
+ T+Y++N+ ++I++ ++ L LF +YG+VI V T + RGQAF+ F +++ A+ A
Sbjct: 25 SETLYIRNIEEKIRLTMLKRILEHLFGSYGKVIDVQARKTLRMRGQAFVVFDNLENASRA 84
Query: 89 LLSLKDELFFNKPLVLQFSK 108
L L+ + KP+++Q+SK
Sbjct: 85 LKDLQGYPLYGKPMMIQYSK 104
>At2g47580 [A] KOG4206 Spliceosomal protein snRNP-U1A/U2B
Length = 250
Score = 58.9 bits (141), Expect = 1e-09
Identities = 23/80 (28%), Positives = 55/80 (68%), Gaps = 2/80 (2%)
Query: 31 NNTVYVKNLNDQIKIQTVRESLYMLFATYGEVIKV--SMTPKQRGQAFITFKSVDEANLA 88
N T+Y+ NLN+++K+ +++SL +F+ +G+++++ T K +GQA++ F + + A+ A
Sbjct: 17 NQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTESASTA 76
Query: 89 LLSLKDELFFNKPLVLQFSK 108
+ + + F++K + +Q++K
Sbjct: 77 IAKMNNFPFYDKEMRIQYAK 96
>At1g67770 [D] KOG4660 Protein Mei2 essential for commitment to meiosis and
related proteins
Length = 527
Score = 47.0 bits (110), Expect = 4e-06
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 33 TVYVKNLNDQIKIQTVRESLYMLFATYGEVIKVSMTPKQRGQAFITFKSVDEANLALLSL 92
++ + NL + T+R +F YGEV +V TP +R Q F+ F V +A AL +
Sbjct: 184 SLVIMNLEPTVSSSTLRH----IFQVYGEVKQVRETPCKREQRFVEFFDVRDAAKALRVM 239
Query: 93 KDELFFNKPLVLQFSK 108
++ KP+V+QFS+
Sbjct: 240 NGKVISGKPMVIQFSR 255
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.317 0.132 0.350
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,593,037
Number of Sequences: 60738
Number of extensions: 127782
Number of successful extensions: 615
Number of sequences better than 1.0e-05: 13
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 596
Number of HSP's gapped (non-prelim): 20
length of query: 114
length of database: 30,389,216
effective HSP length: 90
effective length of query: 24
effective length of database: 24,922,796
effective search space: 598147104
effective search space used: 598147104
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)