ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII2979 good L KOG2851 Replication, recombination and repair Eukaryotic-type DNA primase, catalytic (small) subunit
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII2979 1026554 1025247 -436
(436 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YIR008c [L] KOG2851 Eukaryotic-type DNA primase catalytic (small... 590 e-168
SPAC6B12.10c [L] KOG2851 Eukaryotic-type DNA primase catalytic (... 317 2e-86
Hs4506051 [L] KOG2851 Eukaryotic-type DNA primase catalytic (sma... 258 2e-68
7295113 [L] KOG2851 Eukaryotic-type DNA primase catalytic (small... 232 9e-61
At5g41880 [L] KOG2851 Eukaryotic-type DNA primase catalytic (sma... 222 7e-58
CE00220 [L] KOG2851 Eukaryotic-type DNA primase catalytic (small... 211 2e-54
CE19596 [L] KOG2851 Eukaryotic-type DNA primase catalytic (small... 204 2e-52
ECU08g0630 [L] KOG2851 Eukaryotic-type DNA primase catalytic (sm... 120 4e-27
>YIR008c [L] KOG2851 Eukaryotic-type DNA primase catalytic (small) subunit
Length = 409
Score = 590 bits (1521), Expect = e-168
Identities = 280/405 (69%), Positives = 336/405 (82%), Gaps = 5/405 (1%)
Query: 33 GPSSSDMQYYYQHLYPFKQIFQWLNHSPKPGRDIINREFAMAFRSGAYKRYNSFNSVQEF 92
GPSSSDM+YYY+ LYPFK IF WLNHSPKP RD+INREFAMAFRSGAYKRYNSFNSVQ+F
Sbjct: 9 GPSSSDMEYYYKSLYPFKHIFNWLNHSPKPSRDMINREFAMAFRSGAYKRYNSFNSVQDF 68
Query: 93 KVQIQKANPDRFEIGAVYNKPPRERDSLLKTEMKPMEKELVFDIDMDDYDSYRTCCSGAQ 152
K QI+KANPDRFEIGA+YNKPPRERD+LLK+E+K +EKELVFDIDMDDYD++RTCCSGAQ
Sbjct: 69 KAQIEKANPDRFEIGAIYNKPPRERDTLLKSELKALEKELVFDIDMDDYDAFRTCCSGAQ 128
Query: 153 VCPKCWHFIKLAMKVINSSLENDFGFDEFIWVFSGRRGAHCWISDKRARVMTDSHRKNML 212
VC KCW FI LAMK+ N++L DFG+ +FIWVFSGRRGAHCW+SDKRAR +TD R+N+L
Sbjct: 129 VCSKCWKFISLAMKITNTALREDFGYKDFIWVFSGRRGAHCWVSDKRARALTDVQRRNVL 188
Query: 213 DYMNVVRDRNIEKRLNLVRPLHPHLSRSLEILKPHFVEIILREQDTWRDDELAIKSLATS 272
DY+NV+RDRN +KRL L RP HPHL+RSLE LKP FV I+L EQ+ W DD+ AI++L +
Sbjct: 189 DYVNVIRDRNTDKRLALKRPYHPHLARSLEQLKPFFVSIMLEEQNPWEDDQHAIQTLLPA 248
Query: 273 CHDKQLSEQLKKLWTNKPGRSSEEKWKDMDVIASQLISSFPKQRQHDYLQRLRESKEDII 332
+DKQL + LKK W + P RSS+EKW D+D IA+ L PKQ H + +LRE KED++
Sbjct: 249 LYDKQLIDSLKKYWLDNPRRSSKEKWNDIDQIATSLFKG-PKQDSH--IIKLRECKEDLV 305
Query: 333 IQTLYPKLDVEVTKQTIHLLKAPFCIHPSTGNVCVPITEEFSPEMAPKLIKLQNEMDTND 392
+ TLYPKLDVEVTKQTIHLLKAPFCIHP+TGNVCVPI E F+PE APKLI LQ EM+ N
Sbjct: 306 LMTLYPKLDVEVTKQTIHLLKAPFCIHPATGNVCVPIDESFAPEKAPKLIDLQTEMEKN- 364
Query: 393 NQVQRTSLQPYLDMFGKYVNKLVKQELSSQKRDREEDIK-SSIDF 436
N V T+LQP+++ F YV+ L+K EL S KR+RE+D + +S+DF
Sbjct: 365 NDVSLTALQPFINQFQAYVSSLLKNELGSVKREREDDDEPASLDF 409
>SPAC6B12.10c [L] KOG2851 Eukaryotic-type DNA primase catalytic (small) subunit
Length = 454
Score = 317 bits (812), Expect = 2e-86
Identities = 174/425 (40%), Positives = 241/425 (55%), Gaps = 44/425 (10%)
Query: 36 SSDMQYYYQHLYPFKQIFQWLNHSPKPGRDIINREFAMAFRSGAYKRYNSFNSVQEFKVQ 95
S M YY+HL+P+K +FQWLNH P D +REFA + AY RY SF++ +E K +
Sbjct: 32 SETMIQYYRHLFPWKYLFQWLNHGPVVTNDFAHREFAFTLPNDAYIRYLSFSNWEELKKE 91
Query: 96 IQKANPDRFEIGAVYNKPPRERDSLLKTEMKPMEKELVFDIDMDDYDSYRTCCSGAQVCP 155
P RFE+G VY+ PR+R ++ K+ P++KELVFDIDM DYD RTCCS +C
Sbjct: 92 ALNLCPSRFEVGPVYSANPRDRKTIRKSTFHPLKKELVFDIDMTDYDDVRTCCSKTNICE 151
Query: 156 KCWHFIKLAMKVINSSLENDFGFDEFIWVFSGRRGAHCWISDKRARVMTDSHRKNMLDYM 215
KCW FI +A++V++ DFGF +WV+SGRRG H WI D+ A + D R+ + Y+
Sbjct: 152 KCWPFITIAVQVLDICFHEDFGFKHILWVYSGRRGIHAWICDEIACSLDDRSRRMIASYL 211
Query: 216 NVVRDR---NIEKRLNLVRPLHPHLSRSLEILKPHFVEIILREQDTWRDDELAIKSLATS 272
VV + NL RPLHPHL+RSL ILK FV+I+L +QD W E A ++L
Sbjct: 212 QVVVGNPQGGVRLINNLKRPLHPHLTRSLNILKSAFVKIVLEDQDPWASKEGA-ENLLKL 270
Query: 273 CHDKQLSEQLKKLWTNKPGRSSEEKWKDMD-VIASQLISSFPKQRQHDYLQRLRESKEDI 331
DK L+ L+K W P RSS+ KW D+D V+AS I+S + +K+DI
Sbjct: 271 LPDKDLASALRKKWEVDPERSSKNKWSDIDTVLASGSIASISPSV-------IAIAKQDI 323
Query: 332 IIQTLYPKLDVEVTKQTIHLLKAPFCIHPSTGNVCVPITEE----FSPEMAPKLIKLQNE 387
++ LYP+LDVEV++ HLLK+PFC+HP T VCVPI E F+P P + L E
Sbjct: 324 VLTYLYPRLDVEVSRHLNHLLKSPFCVHPGTSRVCVPIDIERMDSFNPLKVPTVNDLLQE 383
Query: 388 MDTN----------------DNQVQR------------TSLQPYLDMFGKYVNKLVKQEL 419
+D N +NQ TSL PY F + ++L K+ +
Sbjct: 384 LDKNSQNDNGHGPTMETNTTENQKDNARGQSNKGHGFSTSLNPYTLYFKSFSSQLFKETV 443
Query: 420 SSQKR 424
++++
Sbjct: 444 GNKRK 448
>Hs4506051 [L] KOG2851 Eukaryotic-type DNA primase catalytic (small) subunit
Length = 420
Score = 258 bits (658), Expect = 2e-68
Identities = 135/420 (32%), Positives = 238/420 (56%), Gaps = 42/420 (10%)
Query: 39 MQYYYQHLYPFKQIFQWLNHSPKPGRDIINREFAMAFRSGAYKRYNSFNSVQEFKVQIQK 98
++ YY+ L+P+ Q ++WLN+ +REF+ + Y RY SFN+ + + ++QK
Sbjct: 13 LKLYYRRLFPYSQYYRWLNYGGVIKNYFQHREFSFTLKDDIYIRYQSFNNQSDLEKEMQK 72
Query: 99 ANPDRFEIGAVYNKPPRERDSLLKTEMKPMEKELVFDIDMDDYDSYRTCCSGAQVCPKCW 158
NP + +IGAVY+ P + +++ + EKELVFDIDM DYD R CCS A +CPKCW
Sbjct: 73 MNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRCCSSADICPKCW 132
Query: 159 HFIKLAMKVINSSLENDFGFDEFIWVFSGRRGAHCWISDKRARVMTDSHRKNMLDYMNVV 218
+ +A+++I+ +L+ DFGF +WV+SGRRG HCW+ D+ R ++ + R +++Y+++V
Sbjct: 133 TLMTMAIRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAVRSGIVEYLSLV 192
Query: 219 R-DRNIEKRLNLVRPLHPHLSRSLEILKPHFVEIILREQDTWRDDELAIKSLA---TSCH 274
+ ++++K+++L +HP + +S+ I+K +F E L QD + E K LA + H
Sbjct: 193 KGGQDVKKKVHLSEKIHPFIRKSINIIKKYFEEYALVNQDILENKESWDKILALVPETIH 252
Query: 275 DKQLSEQLKKLWTNKPGRSSEEKWKDMDVIASQLISSFPKQRQHDYLQRLRESKEDIIIQ 334
D +L + +K +S ++W+ + +AS+ ++ + +L+ +I++Q
Sbjct: 253 D-ELQQSFQK------SHNSLQRWEHLKKVASRYQNNIKNDKYGPWLE------WEIMLQ 299
Query: 335 TLYPKLDVEVTKQTIHLLKAPFCIHPSTGNVCVPI----TEEFSPEMAPKLIKLQNEMD- 389
+P+LD+ V+K HLLK+PF +HP TG + VPI ++F P P + + E+D
Sbjct: 300 YCFPRLDINVSKGINHLLKSPFSVHPKTGRISVPIDLQKVDQFDPFTVPTISFICRELDA 359
Query: 390 --TNDNQ----------------VQRTSLQPYLDMFGKYVNKLVKQELSS--QKRDREED 429
TN+ + ++TSL PY+ +F ++ L K +K D ++D
Sbjct: 360 ISTNEEEKEENEAESDVKHRTRDYKKTSLAPYVKVFEHFLENLDKSRKGELLKKSDLQKD 419
>7295113 [L] KOG2851 Eukaryotic-type DNA primase catalytic (small) subunit
Length = 438
Score = 232 bits (591), Expect = 9e-61
Identities = 125/363 (34%), Positives = 200/363 (54%), Gaps = 16/363 (4%)
Query: 42 YYQHLYPFKQIFQWLNHSPKPGRDIINREFAMAFRSGAYKRYNSFNSVQEFKVQIQKANP 101
YY+ L+P ++WL++ NRE + + Y RY F++ E + +I NP
Sbjct: 35 YYRRLFPHLPFYRWLSYGSSEDAIFSNREISFTLQDDIYIRYLCFDTQAELEKEICSRNP 94
Query: 102 DRFEIGAVYNKPPRERDSLLKTEMKPMEKELVFDIDMDDYDSYRTCCSGAQVCPKCWHFI 161
+ +IG V + P+ S+ + P+++ELVFDIDM DYD RTCCSGA VC KCW F+
Sbjct: 95 IKIDIGPVMHSKPKNHRSI-PGGLTPVQRELVFDIDMTDYDEVRTCCSGAGVCLKCWKFM 153
Query: 162 KLAMKVINSSLENDFGFDEFIWVFSGRRGAHCWISDKRARVMTDSHRKNMLDYMNVVRDR 221
LA +V++ +L DFGF+ IW+FSGRRG HCW+ D +AR + R + +Y+N++
Sbjct: 154 VLAARVLDVALREDFGFEHIIWIFSGRRGIHCWVCDYQARHLDGRGRYAVAEYLNIITYA 213
Query: 222 NI----EKRLNLVRPLHPHLSRSLEILKPHFVEIILREQDTWRDDELAIKSLATSCHDKQ 277
+ R ++ H L R+L+I++P F EI+L +Q+ + + + L HD
Sbjct: 214 SFAGGNSPRCSMGDRPHHSLKRALKIVEPMFEEIVLEDQNLFGTPK-GVTKLLNMVHDDA 272
Query: 278 LSEQLKKLWTN--KPGRSSEEKWKDMDVIASQLISSFPKQRQHDYLQRLRESKEDIIIQT 335
+L+ + G S W+ A+ + +S + ++L+ +I +
Sbjct: 273 ARGELESYMQKNLEDGAHSRLVWESFIKYANSMRTSTTSA----WSRKLKNIVAEIQLGL 328
Query: 336 LYPKLDVEVTKQTIHLLKAPFCIHPSTGNVCVPIT----EEFSPEMAPKLIKLQNEMDTN 391
LYP+LD+ VT+ HLLKAPFCIHP+TG VCVP + +F P P + +L +E++
Sbjct: 329 LYPRLDINVTRGFNHLLKAPFCIHPATGKVCVPFSVSAVAKFDPTTVPTITQLLHEINAF 388
Query: 392 DNQ 394
D++
Sbjct: 389 DDK 391
>At5g41880 [L] KOG2851 Eukaryotic-type DNA primase catalytic (small) subunit
Length = 407
Score = 222 bits (566), Expect = 7e-58
Identities = 127/332 (38%), Positives = 187/332 (56%), Gaps = 14/332 (4%)
Query: 69 REFAMAFRSGAYKRYNSFNSVQEFKVQIQKANPDRFEIGAVYNKPPRERDSLLKTEMK-- 126
REF+ + Y RY SF + + I+ P + +IGAVY+ P +R + ++
Sbjct: 50 REFSFTLENDVYLRYKSFKNASLMEAAIKSNFPYKIDIGAVYSVDPDKRHAYAQSGTNLF 109
Query: 127 -PMEKELVFDIDMDDYDSYRTCCSGAQVCPKCWHFIKLAMKVINSSLENDFGFDEFIWVF 185
P+E+ELVFDID+ DYD R CCSGA VC KCW + +A+KVI++SL DFGF +WVF
Sbjct: 110 TPVERELVFDIDITDYDDVRYCCSGADVCSKCWPLMTVAIKVIDTSLREDFGFKHILWVF 169
Query: 186 SGRRGAHCWISDKRARVMTDSHRKNMLDYMNVVR-DRNIEKRLNLV-RPLHPHLSRS-LE 242
SGRRG HCW+ D +AR +T+ R + +Y V + + N K+++L+ LHP L+RS ++
Sbjct: 170 SGRRGVHCWVCDAKARRLTNEQRSAVAEYFRVYKGNENNAKKVDLMGHSLHPFLARSYVD 229
Query: 243 ILKPHFVEIILREQDTWRDDELAIKSLATSCHDKQLSEQLKKLWTNKPGRSSEEKWKDMD 302
+K F + Q + E K L D+ + L+ W N S E+ +
Sbjct: 230 FIKSFFEGELQATQSIFSSKEKYEKILG-MITDEDIQADLRGKWENSARSSLSEEATSL- 287
Query: 303 VIASQLISSFPKQRQHDYLQRLRESKEDIIIQTLYPKLDVEVTKQTIHLLKAPFCIHPST 362
+ QL + Q + + LR E+I+ YP++D+EV+KQ HLLKAPFC+HP T
Sbjct: 288 LRWEQLKKAL--QSKRNKALSLRTCVEEIVFTFTYPRIDLEVSKQMNHLLKAPFCVHPKT 345
Query: 363 GNVCVPI----TEEFSPEMAPKLIKLQNEMDT 390
G VCVPI +EF P P L +L E+++
Sbjct: 346 GRVCVPIDPNNCDEFDPLAVPTLSQLIEEINS 377
>CE00220 [L] KOG2851 Eukaryotic-type DNA primase catalytic (small) subunit
Length = 410
Score = 211 bits (536), Expect = 2e-54
Identities = 135/413 (32%), Positives = 206/413 (49%), Gaps = 49/413 (11%)
Query: 38 DMQYYYQHLYPFKQIFQWLNHSPKPGRDIINREFAMAFRSGAYKRYNSFNSVQEFKVQIQ 97
D+ YY++ +P K +WL + G REFA + RY S+N F +
Sbjct: 11 DLPIYYKNFFPVKPFTKWLRYGQNNGDYFNRREFAFILADDVHIRYRSYNDEHAFFKALS 70
Query: 98 KANPDRFEIGAVYNKPPRERDSLLKTEMKPMEKELVFDIDMDDYDSYRTCCSGAQVCPKC 157
NP++ +IGAVYN P T+ + +E+ELVFDID+ DYD R CC A VCPKC
Sbjct: 71 STNPEKLDIGAVYNHEPINNKR--HTDYQAVERELVFDIDLTDYDPVRNCCKDATVCPKC 128
Query: 158 WHFIKLAMKVINSSLENDFGFDEFIWVFSGRRGAHCWISDKRARVMTDSHRKNMLDYMNV 217
W F+ LA+K+++ LE+ F F +WVFSGRRG HCW+ DK+AR++ + R + +N+
Sbjct: 129 WKFMVLAVKILDFQLEDMFDFKARMWVFSGRRGVHCWVGDKKARMLNNYQRSAIATRLNL 188
Query: 218 VRDRN----IEKRLNLVRPLHPHLSRSLEI-LKPHFVEIILREQDTWRDDELAI---KSL 269
+ E R + + + P + + + LK E ++ +Q W D E I K +
Sbjct: 189 FKKNGQCEVTEGRAKMTK-VPPIVRDAFNVALKDGVFEKMIYDQG-WLDKEDFITEYKFM 246
Query: 270 ATSCHD--KQLSEQLK---KLWTNKPGRSSEEKWKDMDVIASQLISSFPKQRQHDYLQRL 324
+ D + LSE K + W G ++ K + PK D+ +
Sbjct: 247 SEVGRDDLRSLSETYKTPQERWNMIRGLFDDDYRKSLS----------PKDGLLDFKMQG 296
Query: 325 RESKEDI--IIQTLYPKLDVEVTKQTIHLLKAPFCIHPSTGNVCVPIT----EEFSPEMA 378
R+ + ++Q YP+LDV V+ T HLLK+PFCIHP TGNV VP+ EEF
Sbjct: 297 RDRNYLLYFVLQRCYPRLDVNVSTGTNHLLKSPFCIHPKTGNVAVPLNVGKIEEFDVSKC 356
Query: 379 PKLIKLQNEM---------DTNDNQVQRT-------SLQPYLDMFGKYVNKLV 415
P++ + E+ D N++ R +L PY++ F K+V+ +
Sbjct: 357 PRIDHVVEELSSLLAERGNDENEDSKNRKFLAYKHGALAPYVENFEKFVSACI 409
>CE19596 [L] KOG2851 Eukaryotic-type DNA primase catalytic (small) subunit
Length = 412
Score = 204 bits (519), Expect = 2e-52
Identities = 125/409 (30%), Positives = 200/409 (48%), Gaps = 39/409 (9%)
Query: 38 DMQYYYQHLYPFKQIFQWLNHSPKPGRDIINREFAMAFRSGAYKRYNSFNSVQEFKVQIQ 97
D+ YY++ +P K +WL + G REF + RY S+N F +
Sbjct: 11 DLPIYYKNFFPVKPFTKWLCYGQNYGDYFNRREFTFILADDVHIRYRSYNDEHSFVKALS 70
Query: 98 KANPDRFEIGAVYNKPPRERDSLLKTEMKPMEKELVFDIDMDDYDSYRTCCSGAQVCPKC 157
NP++ +IGAVYN P T+ + +E+ELVFDID+ DYD R CC A VCPKC
Sbjct: 71 STNPEKLDIGAVYNHEPINNKRY--TDYQAVERELVFDIDLTDYDPVRNCCKDATVCPKC 128
Query: 158 WHFIKLAMKVINSSLENDFGFDEFIWVFSGRRGAHCWISDKRARVMTDSHRKNMLDYMNV 217
W F+ LA+++++ LE F F +WVFSGRRG HCW+ DK+AR++ ++ R + +N+
Sbjct: 129 WKFMVLAVRILDFQLEEMFNFKARMWVFSGRRGVHCWVGDKKARMLNNNQRSAIATRLNL 188
Query: 218 VRDRN----IEKRLNLVRPLHPHLSRSLEI-LKPHFVEIILREQDTWRDDELAIKSLATS 272
+ E R L R + P + + + LK E ++ EQ +D I S
Sbjct: 189 FKKNGQCEVTEGRAKLTR-VPPTVRDAFNVALKDGVFEKMIYEQGWLDNDRFIIDYQYMS 247
Query: 273 CHDKQLSEQLKKLWTNKPGRSSEEKWKDMDVIASQLISSFPKQRQH--DYLQRLRESKED 330
+ + L+++ ++ ++ +E+W + + Q D++ R +
Sbjct: 248 EFGR---DDLRRI--SESFKTPQERWHMLRGLFDNDYRKTLSQNDGLLDFVNNARSRPKK 302
Query: 331 I----IIQTLYPKLDVEVTKQTIHLLKAPFCIHPSTGNVCVPIT----EEFSPEMAPKLI 382
+ ++Q YP+LD VT T HLLK+PFCIHP TGNV VP+ EF P++
Sbjct: 303 VLLYFVLQRCYPRLDANVTTGTNHLLKSPFCIHPKTGNVAVPLNVEKIGEFDVSKCPRID 362
Query: 383 KLQNEMDT------NDNQ----------VQRTSLQPYLDMFGKYVNKLV 415
+ E+ + ND + +L PY++ F +V+ +
Sbjct: 363 HVVEELSSLLTERGNDGDEDSKNRKFLAYKHGALSPYVENFEMFVSACI 411
>ECU08g0630 [L] KOG2851 Eukaryotic-type DNA primase catalytic (small) subunit
Length = 298
Score = 120 bits (301), Expect = 4e-27
Identities = 63/180 (35%), Positives = 99/180 (55%), Gaps = 14/180 (7%)
Query: 39 MQYYYQHLYPFKQIFQWLNHSPKPGRDIINREFAMAFRSGAYKRYNSFNSVQEFKVQIQK 98
M+ YY+ L+P +F+ L +RE + SG Y R+ +F + EF+ ++
Sbjct: 25 MRTYYRTLFPLDLMFRCLRIDE-------SREISFGLGSGGYIRFLTFRTADEFRKKLMG 77
Query: 99 ANPDRFEIGAVYNKPPRERDSLLKTEMKPMEKELVFDIDMDDYDSYRTCCSGAQVCPKCW 158
PD+ ++GA+Y P + + + KELVFD+D+ DY R CCS VC +C
Sbjct: 78 IAPDKIDVGAIYRDRPTKHSI-----SRVVGKELVFDVDLTDYP--RECCSEKLVCNRCL 130
Query: 159 HFIKLAMKVINSSLENDFGFDEFIWVFSGRRGAHCWISDKRARVMTDSHRKNMLDYMNVV 218
IK A++++N SL +FGF + +VFSGRRG HCW+ D A ++D R ++ Y + V
Sbjct: 131 VLIKAAVEILNYSLREEFGFKDVGFVFSGRRGVHCWVFDDEALELSDLERGEIVKYYDSV 190
Score = 50.1 bits (118), Expect = 7e-06
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Query: 316 RQHDYLQRLRESKEDIIIQTLYPKLDVEVTKQTIHLLKAPFCIHPSTGNVCVPITEEFSP 375
R++ L ++ ++ + + +Y ++D EVT++T HL+K PF +HPST + VPI
Sbjct: 205 RKYSSLLGDKDLEDSELFEKMYLRIDKEVTQKTKHLIKMPFSVHPSTEMISVPIDVS--- 261
Query: 376 EMAPKLIKLQNEMDTNDNQVQRTSLQPYLDMFGKY 410
I+L++ D L+PYLD+ K+
Sbjct: 262 --NLDTIRLEDFPRLKDVLESPERLKPYLDIANKW 294
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.319 0.135 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,460,152
Number of Sequences: 60738
Number of extensions: 1148876
Number of successful extensions: 3107
Number of sequences better than 1.0e-05: 8
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3078
Number of HSP's gapped (non-prelim): 10
length of query: 436
length of database: 30,389,216
effective HSP length: 109
effective length of query: 327
effective length of database: 23,768,774
effective search space: 7772389098
effective search space used: 7772389098
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)