ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactII3002   suspect: LH   A     KOG4394  RNA processing and modification                                RNase P subunit that is not also a subunit of RNase MRP, involved in pre-tRNA processing

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactII3002 1033135  1033695 187  
         (187 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YIR015w [A] KOG4394 RNase P subunit that is not also a subunit o...   109   3e-24
SPBC1105.16c [A] KOG4394 RNase P subunit that is not also a subu...    54   2e-07

>YIR015w [A] KOG4394 RNase P subunit that is not also a subunit of RNase MRP
           involved in pre-tRNA processing
          Length = 144

 Score =  109 bits (272), Expect = 3e-24
 Identities = 61/154 (39%), Positives = 84/154 (53%), Gaps = 19/154 (12%)

Query: 38  KVKENKKKSNIDSDGTIQIPAPKGIGNKEHYQRLNYLIQSSAFLATQIRDKDEA-----L 92
           K    K K  ID +GT+ +P P+ I N++H+ RLNYL Q SA+  T+ R K        L
Sbjct: 4   KAHGGKMKPEIDENGTLLVPPPRTIANQDHFHRLNYLYQISAY-QTRARQKARTDAHTPL 62

Query: 93  SRNYIKNMDSIRKKNQLALSPHMKRQVCKKCQRLLIAGRNLQMKIMNGSKKKGKNLRKSD 152
           +RNYIK+MD I KK + +L P +KR +CKKC RLL   + L+             +    
Sbjct: 63  ARNYIKSMDLISKKTKTSLLPTIKRTICKKCHRLLWTPKKLE-------------ITSDG 109

Query: 153 VLVYQCICGETKKFPIGKDPTYQLHLEKPGILIN 186
            L   C CG  K+F IG DP Y+ + E+ G L+N
Sbjct: 110 ALSVMCGCGTVKRFNIGADPNYRTYSEREGNLLN 143


>SPBC1105.16c [A] KOG4394 RNase P subunit that is not also a subunit of RNase MRP
           involved in pre-tRNA processing
          Length = 107

 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 24/80 (30%), Positives = 47/80 (58%), Gaps = 2/80 (2%)

Query: 64  NKEHYQRLNYLIQSSAFLATQIRDKDEALSRNYIKNMDSIRKKNQLALSPHMKRQVCKKC 123
           +K+ + R++YL Q+S  L   +++    LSR+YI     + +K+ + + P +KR +CK C
Sbjct: 5   SKDQHARVSYLYQASQLLFRNVQEP--TLSRHYISTAKDVSQKSVMRIHPDIKRTICKGC 62

Query: 124 QRLLIAGRNLQMKIMNGSKK 143
             LL+ G++  ++    S+K
Sbjct: 63  NSLLVPGKSCSIRFEEPSRK 82


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.317    0.133    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,409,434
Number of Sequences: 60738
Number of extensions: 461182
Number of successful extensions: 1417
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1414
Number of HSP's gapped (non-prelim): 2
length of query: 187
length of database: 30,389,216
effective HSP length: 100
effective length of query: 87
effective length of database: 24,315,416
effective search space: 2115441192
effective search space used: 2115441192
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)