ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII3057 good U KOG3480 Intracellular trafficking, secretion, and vesicular transport Mitochondrial import inner membrane translocase, subunits TIM10/TIM12
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII3057 1054622 1054978 119
(119 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YBR091c [U] KOG3480 Mitochondrial import inner membrane transloc... 129 7e-31
SPAC222.03c [U] KOG3480 Mitochondrial import inner membrane tran... 65 2e-11
YHR005c-a [U] KOG3480 Mitochondrial import inner membrane transl... 58 2e-09
7291327 [U] KOG3480 Mitochondrial import inner membrane transloc... 56 7e-09
At2g29530 [U] KOG3480 Mitochondrial import inner membrane transl... 51 2e-07
Hs6912708 [U] KOG3480 Mitochondrial import inner membrane transl... 49 1e-06
CE28800 [U] KOG3480 Mitochondrial import inner membrane transloc... 46 7e-06
>YBR091c [U] KOG3480 Mitochondrial import inner membrane translocase
subunits TIM10/TIM12
Length = 109
Score = 129 bits (324), Expect = 7e-31
Identities = 64/99 (64%), Positives = 74/99 (74%), Gaps = 2/99 (2%)
Query: 1 MSLFLDPYSA-QTVDEEKIGIAKVQFDAMNTTFNTMLRTCLEKCIPHDEYGESDLNKGEM 59
MS FL+ Q V +EK+ +A VQFDAM +TFN +L TCLEKCIPH+ +GE DL KGE
Sbjct: 1 MSFFLNSLRGNQEVSQEKLDVAGVQFDAMCSTFNNILSTCLEKCIPHEGFGEPDLTKGEQ 60
Query: 60 CCIDRCVAKIHLSNRLIGGFAQSRGFTPERHL-PYDRFV 97
CCIDRCVAK+H SNRLIGGF Q+RGF PE L Y RFV
Sbjct: 61 CCIDRCVAKMHYSNRLIGGFVQTRGFGPENQLRHYSRFV 99
>SPAC222.03c [U] KOG3480 Mitochondrial import inner membrane translocase
subunits TIM10/TIM12
Length = 89
Score = 64.7 bits (156), Expect = 2e-11
Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 1 MSLFLDPYSAQTVDEEKIGIAKVQFDAMNTTFNTMLRTCLEKCIPHDEYGESDLNKGEMC 60
MS+F + QT++ + I +A+ + + M+ FN ++ TC +KCI +Y E+DL KGE
Sbjct: 1 MSMFGIGKNNQTINPQNIAMAEQEVEMMSDIFNRLVMTCHKKCIS-PKYYEADLTKGESV 59
Query: 61 CIDRCVAKIHLSNRLIGGFAQSRG 84
CIDRCV+K +N+ + Q RG
Sbjct: 60 CIDRCVSKYFEANQSLSQHMQKRG 83
>YHR005c-a [U] KOG3480 Mitochondrial import inner membrane translocase
subunits TIM10/TIM12
Length = 93
Score = 57.8 bits (138), Expect = 2e-09
Identities = 28/74 (37%), Positives = 41/74 (54%), Gaps = 1/74 (1%)
Query: 11 QTVDEEKIGIAKVQFDAMNTTFNTMLRTCLEKCIPHDEYGESDLNKGEMCCIDRCVAKIH 70
Q ++KI A+ + D + FN ++ C +KCI + Y E +LNK E C+DRCVAK
Sbjct: 12 QLSSQQKIQAAEAELDLVTDMFNKLVNNCYKKCI-NTSYSEGELNKNESSCLDRCVAKYF 70
Query: 71 LSNRLIGGFAQSRG 84
+N +G Q G
Sbjct: 71 ETNVQVGENMQKMG 84
>7291327 [U] KOG3480 Mitochondrial import inner membrane translocase
subunits TIM10/TIM12
Length = 92
Score = 56.2 bits (134), Expect = 7e-09
Identities = 27/58 (46%), Positives = 38/58 (64%), Gaps = 2/58 (3%)
Query: 12 TVDEEKIGIAK-VQFDAMNTTFNTMLRTCLEKCIPHDEYGESDLNKGEMCCIDRCVAK 68
T D+ K+ + + ++ + M+ +N M C +KCIP Y ES+L KGEM CIDRCVAK
Sbjct: 8 TADQAKLQLMQEMEIEMMSDLYNRMTNACHKKCIP-PRYSESELGKGEMVCIDRCVAK 64
>At2g29530 [U] KOG3480 Mitochondrial import inner membrane translocase
subunits TIM10/TIM12
Length = 83
Score = 51.2 bits (121), Expect = 2e-07
Identities = 24/71 (33%), Positives = 37/71 (51%), Gaps = 1/71 (1%)
Query: 7 PYSAQTVDEEKIGIAKVQFDAMNTTFNTMLRTCLEKCIPHDEYGESDLNKGEMCCIDRCV 66
P E+ +A+ + + FN + +TC KC+ Y E++LN GE CIDRCV
Sbjct: 4 PIPVGVTKEQAFSMAQTEMEYRVELFNKLAQTCFNKCVDK-RYKEAELNMGENSCIDRCV 62
Query: 67 AKIHLSNRLIG 77
+K N ++G
Sbjct: 63 SKYWQVNGMVG 73
>Hs6912708 [U] KOG3480 Mitochondrial import inner membrane translocase
subunits TIM10/TIM12
Length = 90
Score = 48.5 bits (114), Expect = 1e-06
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 7/64 (10%)
Query: 5 LDPYSAQTVDEEKIGIAKVQFDAMNTTFNTMLRTCLEKCIPHDEYGESDLNKGEMCCIDR 64
+DP AQ + A+++ + M +N M C KC+P Y E++L+KGE C+DR
Sbjct: 1 MDPLRAQQL------AAELEVEMMADMYNRMTSACHRKCVP-PHYKEAELSKGESVCLDR 53
Query: 65 CVAK 68
CV+K
Sbjct: 54 CVSK 57
>CE28800 [U] KOG3480 Mitochondrial import inner membrane translocase
subunits TIM10/TIM12
Length = 86
Score = 46.2 bits (108), Expect = 7e-06
Identities = 21/55 (38%), Positives = 33/55 (59%), Gaps = 1/55 (1%)
Query: 14 DEEKIGIAKVQFDAMNTTFNTMLRTCLEKCIPHDEYGESDLNKGEMCCIDRCVAK 68
D + +A+++ + M+ + M +C KCI + ES+L KGE C+DRCVAK
Sbjct: 4 DAQMAQVAELEVEMMSDMYRRMTNSCQAKCIA-TAFRESELTKGEAVCLDRCVAK 57
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.323 0.139 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,389,942
Number of Sequences: 60738
Number of extensions: 239472
Number of successful extensions: 356
Number of sequences better than 1.0e-05: 7
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 352
Number of HSP's gapped (non-prelim): 7
length of query: 119
length of database: 30,389,216
effective HSP length: 95
effective length of query: 24
effective length of database: 24,619,106
effective search space: 590858544
effective search space used: 590858544
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)