ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII3062 good R KOG0381 General function prediction only HMG box-containing protein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII3062 1056188 1056466 93
(93 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YPR052c [R] KOG0381 HMG box-containing protein 151 2e-37
YBR089c-a [R] KOG0381 HMG box-containing protein 150 2e-37
At3g28730 [KLB] KOG0526 Nucleosome-binding factor SPN POB3 subunit 106 6e-24
SPAC57A10.09c [R] KOG0381 HMG box-containing protein 100 3e-22
Hs4504425 [R] KOG0381 HMG box-containing protein 79 8e-16
Hs22055439 [R] KOG0381 HMG box-containing protein 79 8e-16
CE28234 [R] KOG0381 HMG box-containing protein 79 1e-15
CE28233 [R] KOG0381 HMG box-containing protein 79 1e-15
CE26923 [R] KOG0381 HMG box-containing protein 79 1e-15
7293212 [R] KOG0381 HMG box-containing protein 78 2e-15
Hs4885421 [R] KOG0381 HMG box-containing protein 77 3e-15
Hs11321591 [R] KOG0381 HMG box-containing protein 77 3e-15
Hs7662322 [R] KOG0381 HMG box-containing protein 75 1e-14
Hs22067745 [R] KOG0381 HMG box-containing protein 75 2e-14
Hs22061933 [R] KOG0381 HMG box-containing protein 74 3e-14
Hs20546564 [R] KOG0381 HMG box-containing protein 74 3e-14
Hs7662274 [R] KOG0381 HMG box-containing protein 74 3e-14
At4g11080 [R] KOG0381 HMG box-containing protein 74 3e-14
Hs22062160 [R] KOG0381 HMG box-containing protein 74 5e-14
At3g51880 [R] KOG0381 HMG box-containing protein 73 6e-14
At4g23800 [R] KOG0381 HMG box-containing protein 73 8e-14
Hs14249636 [R] KOG0381 HMG box-containing protein 72 1e-13
Hs8922633 [R] KOG0381 HMG box-containing protein 72 2e-13
Hs4507241 [KLB] KOG0526 Nucleosome-binding factor SPN POB3 subunit 71 2e-13
CE08542 [KLB] KOG0526 Nucleosome-binding factor SPN POB3 subunit 70 7e-13
7291642 [KLB] KOG0526 Nucleosome-binding factor SPN POB3 subunit 68 2e-12
CE01414 [KLB] KOG0526 Nucleosome-binding factor SPN POB3 subunit 67 4e-12
At1g20690_2 [R] KOG0381 HMG box-containing protein 67 6e-12
Hs20552486 [R] KOG0381 HMG box-containing protein 66 9e-12
Hs22055671 [R] KOG0381 HMG box-containing protein 65 1e-11
CE29377 [R] KOG0381 HMG box-containing protein 65 1e-11
At2g17560 [R] KOG0381 HMG box-containing protein 64 3e-11
Hs20539802 [R] KOG0381 HMG box-containing protein 62 1e-10
At4g35570 [R] KOG0381 HMG box-containing protein 62 2e-10
YDL002c [R] KOG0381 HMG box-containing protein 61 3e-10
Hs21624652 [R] KOG0381 HMG box-containing protein 60 4e-10
Hs22045236 [R] KOG0381 HMG box-containing protein 59 2e-09
7291251 [R] KOG0381 HMG box-containing protein 59 2e-09
Hs17461494 [R] KOG0381 HMG box-containing protein 57 3e-09
Hs19923236_2 [R] KOG0381 HMG box-containing protein 57 4e-09
ECU06g1270 [R] KOG0381 HMG box-containing protein 56 1e-08
Hs17458426 [R] KOG0381 HMG box-containing protein 55 2e-08
7291012 [B] KOG4715 SWI/SNF-related matrix-associated actin-depe... 55 2e-08
At1g04880_2 [R] KOG0381 HMG box-containing protein 54 4e-08
HsM20127432 [B] KOG4715 SWI/SNF-related matrix-associated actin-... 54 5e-08
Hs21264355 [B] KOG4715 SWI/SNF-related matrix-associated actin-d... 54 5e-08
At5g23420 [R] KOG0381 HMG box-containing protein 54 5e-08
7291330 [R] KOG0381 HMG box-containing protein 54 5e-08
YDR174w [R] KOG0381 HMG box-containing protein 52 1e-07
SPBC28F2.11 [R] KOG0381 HMG box-containing protein 52 1e-07
Hs8922565 [BK] KOG1827 Chromatin remodeling complex RSC subunit ... 52 1e-07
Hs17486194 [R] KOG0381 HMG box-containing protein 51 2e-07
CE26265 [B] KOG4715 SWI/SNF-related matrix-associated actin-depe... 51 2e-07
Hs22067233 [R] KOG0381 HMG box-containing protein 50 5e-07
CE05310 [BK] KOG1827 Chromatin remodeling complex RSC subunit RS... 50 7e-07
7300630 [R] KOG0381 HMG box-containing protein 49 1e-06
7291329 [R] KOG0381 HMG box-containing protein 49 1e-06
Hs8924248 [K] KOG0527 HMG-box transcription factor 47 3e-06
Hs4505911 [L] KOG1978 DNA mismatch repair protein - MLH2/PMS1/Pm... 47 3e-06
At1g76110_2 [R] KOG0381 HMG box-containing protein 47 5e-06
YMR072w [R] KOG0381 HMG box-containing protein 46 8e-06
CE28487 [K] KOG0528 HMG-box transcription factor SOX5 46 8e-06
CE04135_1 [K] KOG0527 HMG-box transcription factor 46 8e-06
>YPR052c [R] KOG0381 HMG box-containing protein
Length = 93
Score = 151 bits (381), Expect = 2e-37
Identities = 73/87 (83%), Positives = 79/87 (89%)
Query: 4 PRKKTQRKKKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNEDE 63
P+K+T RKKKDPNAPKRALSAYMFFANENRDIVR+ENP ITFGQVG+ LGEKWKAL +E
Sbjct: 7 PKKRTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEE 66
Query: 64 KAPYEAKAEADKKRYESEKELYIATKA 90
K PYEAKA+ADKKRYESEKELY AT A
Sbjct: 67 KQPYEAKAQADKKRYESEKELYNATLA 93
>YBR089c-a [R] KOG0381 HMG box-containing protein
Length = 99
Score = 150 bits (380), Expect = 2e-37
Identities = 70/87 (80%), Positives = 80/87 (91%)
Query: 4 PRKKTQRKKKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNEDE 63
P+K+T R+KKDPNAPKR LSAYMFFANENRDIVR+ENP +TFGQVGRILGE+WKAL +E
Sbjct: 13 PKKRTTRRKKDPNAPKRRLSAYMFFANENRDIVRSENPDVTFGQVGRILGERWKALTAEE 72
Query: 64 KAPYEAKAEADKKRYESEKELYIATKA 90
K PYE+KA+ADKKRYESEKELY AT+A
Sbjct: 73 KQPYESKAQADKKRYESEKELYNATRA 99
>At3g28730 [KLB] KOG0526 Nucleosome-binding factor SPN POB3 subunit
Length = 646
Score = 106 bits (264), Expect = 6e-24
Identities = 43/77 (55%), Positives = 63/77 (80%)
Query: 5 RKKTQRKKKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNEDEK 64
++K +KKKDPNAPKRA+S +MFF+ RD ++ E+PGI FG+VG++LG+KW+ ++ D+K
Sbjct: 549 KRKKPKKKKDPNAPKRAMSGFMFFSQMERDNIKKEHPGIAFGEVGKVLGDKWRQMSADDK 608
Query: 65 APYEAKAEADKKRYESE 81
PYEAKA+ DK+RY+ E
Sbjct: 609 EPYEAKAQVDKQRYKDE 625
>SPAC57A10.09c [R] KOG0381 HMG box-containing protein
Length = 108
Score = 100 bits (249), Expect = 3e-22
Identities = 45/90 (50%), Positives = 61/90 (67%)
Query: 4 PRKKTQRKKKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNEDE 63
PR +KKDPN PKR +SA+MFF+ ENR+ ++ +NP TFGQ+G +LG++WK L E
Sbjct: 2 PRAAKSSRKKDPNTPKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKELTSTE 61
Query: 64 KAPYEAKAEADKKRYESEKELYIATKAQSE 93
+ PYE KA DK+RYE E++ Y A E
Sbjct: 62 REPYEEKARQDKERYERERKEYDTKLANGE 91
>Hs4504425 [R] KOG0381 HMG box-containing protein
Length = 215
Score = 79.3 bits (194), Expect = 8e-16
Identities = 37/84 (44%), Positives = 53/84 (63%)
Query: 4 PRKKTQRKKKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNEDE 63
P+ +T++K KDPNAPKR SA+ F +E R ++ E+PG++ G V + LGE W D+
Sbjct: 81 PKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADD 140
Query: 64 KAPYEAKAEADKKRYESEKELYIA 87
K PYE KA K++YE + Y A
Sbjct: 141 KQPYEKKAAKLKEKYEKDIAAYRA 164
Score = 59.7 bits (143), Expect = 7e-10
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 12 KKDPNAPKRALSAYMFFANENRDIVRAENP--GITFGQVGRILGEKWKALNEDEKAPYEA 69
K DP P+ +S+Y FF R+ + ++P + F + + E+WK ++ EK +E
Sbjct: 3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62
Query: 70 KAEADKKRYESEKELYIATKAQSE 93
A+ADK RYE E + YI K +++
Sbjct: 63 MAKADKARYEREMKTYIPPKGETK 86
>Hs22055439 [R] KOG0381 HMG box-containing protein
Length = 168
Score = 79.3 bits (194), Expect = 8e-16
Identities = 37/84 (44%), Positives = 53/84 (63%)
Query: 4 PRKKTQRKKKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNEDE 63
P+ +T++K KDPNAPKR SA+ F +E R ++ E+PG++ G V + LGE W D+
Sbjct: 49 PKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADD 108
Query: 64 KAPYEAKAEADKKRYESEKELYIA 87
K PYE KA K++YE + Y A
Sbjct: 109 KQPYEKKAAKLKEKYEKDIAAYRA 132
>CE28234 [R] KOG0381 HMG box-containing protein
Length = 233
Score = 79.0 bits (193), Expect = 1e-15
Identities = 38/82 (46%), Positives = 54/82 (65%)
Query: 6 KKTQRKKKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNEDEKA 65
+K +R KKDP+APKRALSA+ F++ + R ++A +P GQV + LG+ WK + ++ K
Sbjct: 121 RKRKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKD 180
Query: 66 PYEAKAEADKKRYESEKELYIA 87
YE KA+ADK RY E Y A
Sbjct: 181 MYEQKAQADKDRYADEMRNYKA 202
>CE28233 [R] KOG0381 HMG box-containing protein
Length = 234
Score = 79.0 bits (193), Expect = 1e-15
Identities = 38/82 (46%), Positives = 54/82 (65%)
Query: 6 KKTQRKKKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNEDEKA 65
+K +R KKDP+APKRALSA+ F++ + R ++A +P GQV + LG+ WK + ++ K
Sbjct: 122 RKRKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKD 181
Query: 66 PYEAKAEADKKRYESEKELYIA 87
YE KA+ADK RY E Y A
Sbjct: 182 MYEQKAQADKDRYADEMRNYKA 203
>CE26923 [R] KOG0381 HMG box-containing protein
Length = 235
Score = 79.0 bits (193), Expect = 1e-15
Identities = 38/82 (46%), Positives = 54/82 (65%)
Query: 6 KKTQRKKKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNEDEKA 65
+K +R KKDP+APKRALSA+ F++ + R ++A +P GQV + LG+ WK + ++ K
Sbjct: 123 RKRKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKD 182
Query: 66 PYEAKAEADKKRYESEKELYIA 87
YE KA+ADK RY E Y A
Sbjct: 183 MYEQKAQADKDRYADEMRNYKA 204
>7293212 [R] KOG0381 HMG box-containing protein
Length = 328
Score = 78.2 bits (191), Expect = 2e-15
Identities = 37/81 (45%), Positives = 52/81 (63%)
Query: 5 RKKTQRKKKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNEDEK 64
R K +++ KDPNAPKR+LSA+ +F N+ R+ V+A NP G + + LG KW ++ + K
Sbjct: 193 RGKKRKQIKDPNAPKRSLSAFFWFCNDERNKVKALNPEFGVGDIAKELGRKWSDVDPEVK 252
Query: 65 APYEAKAEADKKRYESEKELY 85
YE+ AE DK RYE E Y
Sbjct: 253 QKYESMAERDKARYEREMTEY 273
Score = 49.7 bits (117), Expect = 7e-07
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Query: 2 AAPRKKTQRKKKDPNAPKRALSAYMFFANENRDIVRAENPGIT--FGQVGRILGEKWKAL 59
A+P + + K P+ ++AY +F R+ + ++P T F + R E+WK +
Sbjct: 102 ASPMSRVKADAK----PRGRMTAYAYFVQTCREEHKKKHPDETVIFAEFSRKCAERWKTM 157
Query: 60 NEDEKAPYEAKAEADKKRYESEKELYIATK 89
+ EK + AE DK+RYE+E + Y+ K
Sbjct: 158 VDKEKKRFHEMAEKDKQRYEAEMQNYVPPK 187
>Hs4885421 [R] KOG0381 HMG box-containing protein
Length = 200
Score = 77.4 bits (189), Expect = 3e-15
Identities = 36/75 (48%), Positives = 48/75 (64%)
Query: 7 KTQRKKKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNEDEKAP 66
K +KKKDPNAPKR S + F +E R +++ NPGI+ G V + LGE W LN+ EK P
Sbjct: 82 KGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQP 141
Query: 67 YEAKAEADKKRYESE 81
Y KA K++YE +
Sbjct: 142 YITKAAKLKEKYEKD 156
Score = 53.9 bits (128), Expect = 4e-08
Identities = 27/76 (35%), Positives = 42/76 (54%), Gaps = 2/76 (2%)
Query: 12 KKDPNAPKRALSAYMFFANENRDIVRAENPGI--TFGQVGRILGEKWKALNEDEKAPYEA 69
K DP PK SAY FF R+ + +NP + F + + E+WK ++ EK+ ++
Sbjct: 3 KGDPKKPKGKTSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTVSGKEKSKFDE 62
Query: 70 KAEADKKRYESEKELY 85
A+ADK RY+ E + Y
Sbjct: 63 MAKADKVRYDREMKDY 78
>Hs11321591 [R] KOG0381 HMG box-containing protein
Length = 209
Score = 77.4 bits (189), Expect = 3e-15
Identities = 38/90 (42%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
Query: 4 PRKKTQRKKKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNEDE 63
P+ + KKKDPNAPKR SA+ F +E+R +++E+PG++ G + LGE W + +
Sbjct: 81 PKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKD 140
Query: 64 KAPYEAKAEADKKRYESEKELYIATKAQSE 93
K PYE KA K++YE + Y A K +SE
Sbjct: 141 KQPYEQKAAKLKEKYEKDIAAYRA-KGKSE 169
Score = 57.8 bits (138), Expect = 3e-09
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 12 KKDPNAPKRALSAYMFFANENRDIVRAENP--GITFGQVGRILGEKWKALNEDEKAPYEA 69
K DPN P+ +S+Y FF R+ + ++P + F + + E+WK ++ EK+ +E
Sbjct: 3 KGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFED 62
Query: 70 KAEADKKRYESEKELYIATKAQSE 93
A++DK RY+ E + Y+ K +
Sbjct: 63 MAKSDKARYDREMKNYVPPKGDKK 86
>Hs7662322 [R] KOG0381 HMG box-containing protein
Length = 526
Score = 75.5 bits (184), Expect = 1e-14
Identities = 34/93 (36%), Positives = 55/93 (58%), Gaps = 3/93 (3%)
Query: 4 PRKKTQRKKKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNEDE 63
P+ ++KKKDPN P++ +SAY F + + ++ +NP TFG+V +I+ W L E++
Sbjct: 247 PKTPKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQ 306
Query: 64 KAPYEAKAEADKKRYESEKELY---IATKAQSE 93
K Y+ K EA KK Y + Y + +K+ SE
Sbjct: 307 KQVYKKKTEAAKKEYLKQLAAYRASLVSKSYSE 339
>Hs22067745 [R] KOG0381 HMG box-containing protein
Length = 576
Score = 74.7 bits (182), Expect = 2e-14
Identities = 34/93 (36%), Positives = 55/93 (58%), Gaps = 3/93 (3%)
Query: 4 PRKKTQRKKKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNEDE 63
P+ ++KKKDPN P++ +SAY F + + ++ +NP TFG+V +I+ W +L E++
Sbjct: 241 PKTPKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQ 300
Query: 64 KAPYEAKAEADKKRYESEKELY---IATKAQSE 93
K Y+ K EA KK Y Y + +KA +E
Sbjct: 301 KQVYKRKTEAAKKEYLKALAAYRASLVSKAAAE 333
>Hs22061933 [R] KOG0381 HMG box-containing protein
Length = 411
Score = 74.3 bits (181), Expect = 3e-14
Identities = 34/84 (40%), Positives = 52/84 (61%)
Query: 4 PRKKTQRKKKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNEDE 63
P+ +T++K KDPNAPKR SA+ + +E ++ E PG++FG V + LGE W D+
Sbjct: 285 PKGETKKKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADD 344
Query: 64 KAPYEAKAEADKKRYESEKELYIA 87
K PYE ++ K++YE + Y A
Sbjct: 345 KQPYEKRSAKLKEKYEKDIAAYRA 368
>Hs20546564 [R] KOG0381 HMG box-containing protein
Length = 173
Score = 74.3 bits (181), Expect = 3e-14
Identities = 34/75 (45%), Positives = 48/75 (63%)
Query: 7 KTQRKKKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNEDEKAP 66
K +KKKDP+APKR S + F++E R +++ NPGI+ G V + LGE W LN+ EK P
Sbjct: 77 KGGKKKKDPSAPKRPPSGFFLFSSEIRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQP 136
Query: 67 YEAKAEADKKRYESE 81
Y K K++YE +
Sbjct: 137 YITKTAKLKEKYEKD 151
Score = 50.1 bits (118), Expect = 5e-07
Identities = 23/70 (32%), Positives = 39/70 (54%), Gaps = 1/70 (1%)
Query: 12 KKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNEDEKAPYEAKA 71
K DP PK +SAY+FF R+ + +NP + F + + E+WK ++ EK+ ++ A
Sbjct: 3 KGDPKKPKGKMSAYVFFVQTCREECKKKNP-VNFAEFSKKCSERWKTMSGKEKSKFDEMA 61
Query: 72 EADKKRYESE 81
+ DK + E
Sbjct: 62 KTDKVHCDRE 71
>Hs7662274 [R] KOG0381 HMG box-containing protein
Length = 621
Score = 73.9 bits (180), Expect = 3e-14
Identities = 33/76 (43%), Positives = 49/76 (64%), Gaps = 3/76 (3%)
Query: 3 APRKKTQRKKKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNED 62
AP+K RKKKDPN P++ +SAY F + + ++ +NP TFG+V +I+ W +L E+
Sbjct: 211 APKK---RKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEE 267
Query: 63 EKAPYEAKAEADKKRY 78
+K Y+ K EA KK Y
Sbjct: 268 QKQVYKRKTEAAKKEY 283
>At4g11080 [R] KOG0381 HMG box-containing protein
Length = 446
Score = 73.9 bits (180), Expect = 3e-14
Identities = 36/86 (41%), Positives = 56/86 (64%), Gaps = 2/86 (2%)
Query: 6 KKTQRKKKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNEDEKA 65
KK +K KDP PK+ +SAY+ +ANE R ++ EN + +V ++ GE+WK L+E++KA
Sbjct: 234 KKKAKKIKDPLKPKQPISAYLIYANERRAALKGENKSVI--EVAKMAGEEWKNLSEEKKA 291
Query: 66 PYEAKAEADKKRYESEKELYIATKAQ 91
PY+ A+ +K+ Y E E Y TK +
Sbjct: 292 PYDQMAKKNKEIYLQEMEGYKRTKEE 317
Score = 66.6 bits (161), Expect = 6e-12
Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 5/88 (5%)
Query: 6 KKTQRKKKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNEDEKA 65
KK ++KKKD KR + Y+ + +N + V+ +NP F + ILG KWK ++ +EK
Sbjct: 117 KKGKKKKKDCAETKRPSTPYILWCKDNWNEVKKQNPEADFKETSNILGAKWKGISAEEKK 176
Query: 66 PYEAKAEADKKRYESEKELYIATKAQSE 93
PYE K +ADK+ Y L + TK + E
Sbjct: 177 PYEEKYQADKEAY-----LQVITKEKRE 199
Score = 60.5 bits (145), Expect = 4e-10
Identities = 35/92 (38%), Positives = 46/92 (49%), Gaps = 5/92 (5%)
Query: 6 KKTQRKKK-----DPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALN 60
K+T + KK DPN PK+ S+Y F + R V E+PGI V + KW L
Sbjct: 355 KETAKNKKKNENVDPNKPKKPTSSYFLFCKDARKSVLEEHPGINNSTVTAHISLKWMELG 414
Query: 61 EDEKAPYEAKAEADKKRYESEKELYIATKAQS 92
E+EK Y +KA + Y+ E E Y TK S
Sbjct: 415 EEEKQVYNSKAAELMEAYKKEVEEYNKTKTSS 446
>Hs22062160 [R] KOG0381 HMG box-containing protein
Length = 187
Score = 73.6 bits (179), Expect = 5e-14
Identities = 35/84 (41%), Positives = 51/84 (60%)
Query: 4 PRKKTQRKKKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNEDE 63
P+ +T++K KDPNAPKR SA+ F +E ++ E+PG++ G V + LGE W D+
Sbjct: 57 PKGETKKKFKDPNAPKRPPSAFFLFCSEYHPKIKGEHPGLSIGDVAKKLGEMWNNTAADD 116
Query: 64 KAPYEAKAEADKKRYESEKELYIA 87
K P E KA K++YE + Y A
Sbjct: 117 KQPGEKKAAKLKEKYEKDIAAYQA 140
>At3g51880 [R] KOG0381 HMG box-containing protein
Length = 178
Score = 73.2 bits (178), Expect = 6e-14
Identities = 35/81 (43%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 6 KKTQRKKKDPNAPKRALSAYMFFANENRDIVRAENPGI-TFGQVGRILGEKWKALNEDEK 64
+K ++ KKDPN PKRA SA+ F + R + ENP + VG+ G+KWK++++ EK
Sbjct: 41 RKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEK 100
Query: 65 APYEAKAEADKKRYESEKELY 85
APYE KA K YE + + Y
Sbjct: 101 APYEEKAAKRKAEYEKQMDAY 121
>At4g23800 [R] KOG0381 HMG box-containing protein
Length = 456
Score = 72.8 bits (177), Expect = 8e-14
Identities = 36/86 (41%), Positives = 54/86 (61%), Gaps = 2/86 (2%)
Query: 6 KKTQRKKKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNEDEKA 65
KK +K+KDP PK +SA++ +ANE R +R EN + +V +I GE+WK L++ +KA
Sbjct: 243 KKKNKKEKDPLKPKHPVSAFLVYANERRAALREENKSVV--EVAKITGEEWKNLSDKKKA 300
Query: 66 PYEAKAEADKKRYESEKELYIATKAQ 91
PYE A+ +K+ Y E Y TK +
Sbjct: 301 PYEKVAKKNKETYLQAMEEYKRTKEE 326
Score = 62.4 bits (150), Expect = 1e-10
Identities = 33/92 (35%), Positives = 50/92 (53%), Gaps = 7/92 (7%)
Query: 2 AAPRKKTQRKKKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNE 61
A K ++KKKD KR S+Y+ + + V+ ENP F + ILG KWK+L+
Sbjct: 122 AEQEKANKKKKKDCPETKRPSSSYVLWCKDQWTEVKKENPEADFKETSNILGAKWKSLSA 181
Query: 62 DEKAPYEAKAEADKKRYESEKELYIATKAQSE 93
++K PYE +RY+ EKE Y+ A+ +
Sbjct: 182 EDKKPYE-------ERYQVEKEAYLQVIAKEK 206
Score = 60.5 bits (145), Expect = 4e-10
Identities = 29/80 (36%), Positives = 42/80 (52%)
Query: 6 KKTQRKKKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNEDEKA 65
KK + + DPN PK+ S+Y F+ + R + E PG V ++ KWK L+E+EK
Sbjct: 367 KKKKNENVDPNKPKKPASSYFLFSKDERKKLTEERPGTNNATVTALISLKWKELSEEEKQ 426
Query: 66 PYEAKAEADKKRYESEKELY 85
Y KA + Y+ E E Y
Sbjct: 427 VYNGKAAKLMEAYKKEVEAY 446
>Hs14249636 [R] KOG0381 HMG box-containing protein
Length = 464
Score = 72.4 bits (176), Expect = 1e-13
Identities = 34/85 (40%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Query: 4 PRKKTQRKKKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNEDE 63
P+KK KKKDPN P++ +SAY F + + ++ +NP TFG V +I+ W +L E++
Sbjct: 193 PKKK---KKKDPNEPQKPVSAYALFFRDTQAAIKGQNPSATFGDVSKIVASMWDSLGEEQ 249
Query: 64 KAPYEAKAEADKKRYESEKELYIAT 88
K Y+ K EA KK Y Y A+
Sbjct: 250 KQAYKRKTEAAKKEYLKALAAYRAS 274
>Hs8922633 [R] KOG0381 HMG box-containing protein
Length = 347
Score = 71.6 bits (174), Expect = 2e-13
Identities = 34/85 (40%), Positives = 53/85 (62%)
Query: 6 KKTQRKKKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNEDEKA 65
+K ++ +D NAPK L+ Y+ F NE R+ +RA+ P + F ++ R+LG +W L +EK
Sbjct: 91 RKRKKPLRDSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQ 150
Query: 66 PYEAKAEADKKRYESEKELYIATKA 90
Y +A+ DK+RY E E Y T+A
Sbjct: 151 RYLDEADRDKERYMKELEQYQKTEA 175
>Hs4507241 [KLB] KOG0526 Nucleosome-binding factor SPN POB3 subunit
Length = 709
Score = 71.2 bits (173), Expect = 2e-13
Identities = 34/97 (35%), Positives = 60/97 (61%), Gaps = 5/97 (5%)
Query: 1 MAAPRKKTQR-----KKKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEK 55
MA RK ++ K KDPNAPKR +SAYM + N +R+ +++++PGI+ + + GE
Sbjct: 525 MAKDRKSRKKPVEVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEI 584
Query: 56 WKALNEDEKAPYEAKAEADKKRYESEKELYIATKAQS 92
WK +++++K ++ KAE ++ YE + Y + +S
Sbjct: 585 WKGMSKEKKEEWDRKAEDARRDYEKAMKEYEGGRGES 621
>CE08542 [KLB] KOG0526 Nucleosome-binding factor SPN POB3 subunit
Length = 689
Score = 69.7 bits (169), Expect = 7e-13
Identities = 34/79 (43%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 7 KTQRKKKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNEDEKAP 66
K +K KDPN PKRA +AY+ + N NR+ ++ + G T G V + G KWK+++ D+K
Sbjct: 550 KKGKKTKDPNEPKRATTAYIIWFNANRNSMKED--GDTLGDVAKKAGAKWKSMSADDKKE 607
Query: 67 YEAKAEADKKRYESEKELY 85
+ KA DK RYE+E + Y
Sbjct: 608 WNDKAAQDKARYEAEMKEY 626
>7291642 [KLB] KOG0526 Nucleosome-binding factor SPN POB3 subunit
Length = 723
Score = 68.2 bits (165), Expect = 2e-12
Identities = 33/80 (41%), Positives = 48/80 (59%), Gaps = 2/80 (2%)
Query: 6 KKTQRKKKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNEDEKA 65
KK +KKKD PKRA +A+M + N+ R+ ++ ENPGI ++ + GE WK L +K+
Sbjct: 543 KKPSKKKKDSGKPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKELK--DKS 600
Query: 66 PYEAKAEADKKRYESEKELY 85
+E A DK+RY E Y
Sbjct: 601 KWEDAAAKDKQRYHDEMRNY 620
>CE01414 [KLB] KOG0526 Nucleosome-binding factor SPN POB3 subunit
Length = 697
Score = 67.0 bits (162), Expect = 4e-12
Identities = 37/81 (45%), Positives = 47/81 (57%), Gaps = 6/81 (7%)
Query: 7 KTQRKKKDPNAPKRALSAYM--FFANENRDIVRAENPGITFGQVGRILGEKWKALNEDEK 64
K +K KDPNAPKRA SAYM F A+ N + G + V + G KWK ++ D+K
Sbjct: 545 KKGKKDKDPNAPKRATSAYMQWFLASRNE----LKEDGDSVADVAKKGGAKWKTMSSDDK 600
Query: 65 APYEAKAEADKKRYESEKELY 85
+E KAE DK RYE E + Y
Sbjct: 601 KKWEEKAEEDKSRYEKEMKEY 621
>At1g20690_2 [R] KOG0381 HMG box-containing protein
Length = 249
Score = 66.6 bits (161), Expect = 6e-12
Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 4 PRKKTQRKKKDPNAPKRALSAYMFFANENRDIVRAENP-GITFGQVGRILGEKWKALNED 62
P K + KDPN PKR SA+ F + R + E+P + VG+ GEKWK+L++
Sbjct: 129 PAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDS 188
Query: 63 EKAPYEAKAEADKKRYESEKELY 85
EKAPY AKA+ K YE + Y
Sbjct: 189 EKAPYVAKADKRKVEYEKNMKAY 211
Score = 60.1 bits (144), Expect = 5e-10
Identities = 30/69 (43%), Positives = 41/69 (58%), Gaps = 1/69 (1%)
Query: 18 PKRALSAYMFFANENRDIVRAENP-GITFGQVGRILGEKWKALNEDEKAPYEAKAEADKK 76
PKR SA+ F + R+ + ENP + VG+ G+KWK+L++ EKAPY AKAE K
Sbjct: 2 PKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKV 61
Query: 77 RYESEKELY 85
YE + Y
Sbjct: 62 EYEKNIKAY 70
>Hs20552486 [R] KOG0381 HMG box-containing protein
Length = 211
Score = 65.9 bits (159), Expect = 9e-12
Identities = 31/71 (43%), Positives = 44/71 (61%)
Query: 11 KKKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNEDEKAPYEAK 70
KKKDPNA KR LS + F +E +++ NPGI+ G + + LGE W ++ EK PY K
Sbjct: 85 KKKDPNALKRPLSGFFLFCSEFHPKIKSTNPGISIGDMAKKLGEMWINYSDREKQPYITK 144
Query: 71 AEADKKRYESE 81
A K++YE +
Sbjct: 145 AADLKEKYEKD 155
>Hs22055671 [R] KOG0381 HMG box-containing protein
Length = 178
Score = 65.5 bits (158), Expect = 1e-11
Identities = 31/78 (39%), Positives = 50/78 (63%), Gaps = 1/78 (1%)
Query: 4 PRKKTQRKKKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNEDE 63
P+ +T+ K +DPNAPK A+ F++E+ ++ E+PG++ V + LGE W + ED+
Sbjct: 14 PKAETKMKFEDPNAPKSPPLAFFMFSSEDCPKIK-EHPGLSISDVAKKLGEMWNYIAEDD 72
Query: 64 KAPYEAKAEADKKRYESE 81
K PYE KA K++YE +
Sbjct: 73 KHPYEKKAVKLKEKYEKD 90
>CE29377 [R] KOG0381 HMG box-containing protein
Length = 95
Score = 65.5 bits (158), Expect = 1e-11
Identities = 36/80 (45%), Positives = 51/80 (63%), Gaps = 6/80 (7%)
Query: 2 AAPRKKTQR--KKKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKAL 59
A+P K+ ++ K KDPNAPKRA+SA+ F+ ENR+ R + PG+ V + G +W L
Sbjct: 10 ASPVKRVKKGGKAKDPNAPKRAMSAFFFWMQENRE--RIKKPGMGVADVAKAAGVEWGKL 67
Query: 60 NEDEKAPYEAKAEADKKRYE 79
+K+ +E KA DKKRYE
Sbjct: 68 T--DKSRWEKKAADDKKRYE 85
>At2g17560 [R] KOG0381 HMG box-containing protein
Length = 138
Score = 64.3 bits (155), Expect = 3e-11
Identities = 33/82 (40%), Positives = 46/82 (55%), Gaps = 1/82 (1%)
Query: 5 RKKTQRKKKDPNAPKRALSAYMFFANENRDIVRAENPGI-TFGQVGRILGEKWKALNEDE 63
RK ++ KKDPN PKR SA+ F + R NP + VG+ G +WKA+ +++
Sbjct: 22 RKAGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDED 81
Query: 64 KAPYEAKAEADKKRYESEKELY 85
KAPY AKAE+ K Y + Y
Sbjct: 82 KAPYVAKAESRKTEYIKNVQQY 103
>Hs20539802 [R] KOG0381 HMG box-containing protein
Length = 140
Score = 62.0 bits (149), Expect = 1e-10
Identities = 30/71 (42%), Positives = 42/71 (58%)
Query: 7 KTQRKKKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNEDEKAP 66
K +KKKDPNA KR LS + F +E +++ NP I+ + + LGE W LN+ EK P
Sbjct: 70 KGAKKKKDPNASKRPLSGFFLFCSELGPKIKSTNPTISIRDMAKKLGEMWNNLNDSEKQP 129
Query: 67 YEAKAEADKKR 77
Y KA K++
Sbjct: 130 YITKAAKLKEK 140
>At4g35570 [R] KOG0381 HMG box-containing protein
Length = 125
Score = 61.6 bits (148), Expect = 2e-10
Identities = 30/80 (37%), Positives = 45/80 (55%), Gaps = 1/80 (1%)
Query: 7 KTQRKKKDPNAPKRALSAYMFFANENRDIVRAENP-GITFGQVGRILGEKWKALNEDEKA 65
K +K KDPN PK+ S + F ++ R NP + G VGR G+KWK + E+E+A
Sbjct: 23 KVGKKTKDPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAAGKKWKTMTEEERA 82
Query: 66 PYEAKAEADKKRYESEKELY 85
P+ AK+++ K Y + Y
Sbjct: 83 PFVAKSQSKKTEYAVTMQQY 102
>YDL002c [R] KOG0381 HMG box-containing protein
Length = 203
Score = 60.8 bits (146), Expect = 3e-10
Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 7/84 (8%)
Query: 5 RKKTQR---KKKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNE 61
+ KT+R K++DPN PKR +AY+ + N++ +R +N + V R L E WK LNE
Sbjct: 78 KSKTKRHKVKERDPNMPKRPTNAYLLYCEMNKERIR-QNGSL---DVTRDLAEGWKNLNE 133
Query: 62 DEKAPYEAKAEADKKRYESEKELY 85
++ PY D++RY+ E E+Y
Sbjct: 134 QDRKPYYKLYSEDRERYQMEMEIY 157
>Hs21624652 [R] KOG0381 HMG box-containing protein
Length = 186
Score = 60.5 bits (145), Expect = 4e-10
Identities = 27/80 (33%), Positives = 46/80 (56%)
Query: 6 KKTQRKKKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNEDEKA 65
K+ +R+K+DP AP+R S+++ F ++ ++ ENP + QV + G+ W + EK
Sbjct: 81 KRKKRRKRDPQAPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTATDLEKH 140
Query: 66 PYEAKAEADKKRYESEKELY 85
PYE + + +Y E ELY
Sbjct: 141 PYEQRVALLRAKYFEELELY 160
Score = 50.8 bits (120), Expect = 3e-07
Identities = 25/74 (33%), Positives = 42/74 (55%), Gaps = 2/74 (2%)
Query: 18 PKRALSAYMFFANENRDIVRAENPG--ITFGQVGRILGEKWKALNEDEKAPYEAKAEADK 75
PK +S+Y+ F R+ + + P + F + R EKW+++++ EKA YEA A+ DK
Sbjct: 9 PKANVSSYVHFLLNYRNKFKEQQPSTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLDK 68
Query: 76 KRYESEKELYIATK 89
RY+ E Y+ +
Sbjct: 69 ARYQEEMMNYVGKR 82
>Hs22045236 [R] KOG0381 HMG box-containing protein
Length = 112
Score = 58.5 bits (140), Expect = 2e-09
Identities = 26/80 (32%), Positives = 45/80 (55%)
Query: 6 KKTQRKKKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNEDEKA 65
K+ +R+K+DP P+R S+++ F ++ ++ ENP + QV + G+ W + EK
Sbjct: 7 KRKKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTATDLEKH 66
Query: 66 PYEAKAEADKKRYESEKELY 85
PYE + + +Y E ELY
Sbjct: 67 PYEQRVALLRAKYFEELELY 86
>7291251 [R] KOG0381 HMG box-containing protein
Length = 376
Score = 58.5 bits (140), Expect = 2e-09
Identities = 29/82 (35%), Positives = 46/82 (55%)
Query: 5 RKKTQRKKKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNEDEK 64
+K QR+ APK L+ Y+ F N+ R+ +R E P T + RI+GE+W L E+ K
Sbjct: 63 KKLAQRRINVAGAPKMPLNGYVRFMNDRREELRREQPQRTALEHTRIIGEEWHQLPEERK 122
Query: 65 APYEAKAEADKKRYESEKELYI 86
PY A DK Y+ + ++++
Sbjct: 123 LPYIEAAAKDKAIYQEQLQMFL 144
>Hs17461494 [R] KOG0381 HMG box-containing protein
Length = 105
Score = 57.4 bits (137), Expect = 3e-09
Identities = 28/71 (39%), Positives = 41/71 (57%)
Query: 8 TQRKKKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNEDEKAPY 67
T++K KDPN K+ SA+ F++E ++ E+P ++ G V L E W D+K PY
Sbjct: 35 TKKKHKDPNVLKKHPSAFFLFSSEYLHKIKREHPSLSVGDVATKLEEVWNDTAADDKLPY 94
Query: 68 EAKAEADKKRY 78
E KA KK+Y
Sbjct: 95 EKKAMKLKKKY 105
>Hs19923236_2 [R] KOG0381 HMG box-containing protein
Length = 181
Score = 57.0 bits (136), Expect = 4e-09
Identities = 29/84 (34%), Positives = 46/84 (54%)
Query: 4 PRKKTQRKKKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNEDE 63
P+ + ++K KDPNAPKR A+ F +E R ++ E+PG++ V + L W +
Sbjct: 57 PKGEKKKKFKDPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLAGMWNNTAAAD 116
Query: 64 KAPYEAKAEADKKRYESEKELYIA 87
K YE KA K++Y+ + Y A
Sbjct: 117 KQFYEKKAAKLKEKYKKDIAAYRA 140
>ECU06g1270 [R] KOG0381 HMG box-containing protein
Length = 201
Score = 55.8 bits (133), Expect = 1e-08
Identities = 28/83 (33%), Positives = 45/83 (53%), Gaps = 2/83 (2%)
Query: 4 PRKKTQ-RKKKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNED 62
PR KT +++KDPNAPK+ +S Y F E R E + GR + E WK L+++
Sbjct: 29 PRSKTAVKRRKDPNAPKKPMSGYFIFGQEQRK-KNEELSRLPVADQGRAISEMWKKLSDE 87
Query: 63 EKAPYEAKAEADKKRYESEKELY 85
E+ Y + +++ Y++ E Y
Sbjct: 88 EREEYNKISNRERELYQARIEEY 110
>Hs17458426 [R] KOG0381 HMG box-containing protein
Length = 135
Score = 55.1 bits (131), Expect = 2e-08
Identities = 30/84 (35%), Positives = 43/84 (50%), Gaps = 12/84 (14%)
Query: 9 QRKKKDPNAP-----------KRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWK 57
+ KK+P P +R LS + F +E +++ NPGI+ G V + LGE W
Sbjct: 25 EEHKKNPEVPVNFAEFSKKCSERPLSGFFLFCSEFCPKIKSTNPGISIGDVAKKLGEMWN 84
Query: 58 ALNEDEKAPYEAKAEADKKRYESE 81
LN+ EK PY K A K+YE +
Sbjct: 85 NLNDSEKQPYVTKV-AKLKKYEKD 107
>7291012 [B] KOG4715 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin
Length = 749
Score = 55.1 bits (131), Expect = 2e-08
Identities = 27/89 (30%), Positives = 47/89 (52%)
Query: 2 AAPRKKTQRKKKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNE 61
++ + R K P P++ + YM ++ D V+A++P + ++G+ +G WK L E
Sbjct: 73 SSKNQNESRLPKPPKPPEKPILPYMRYSKRVWDSVKAKHPELKLWELGKKIGAMWKLLPE 132
Query: 62 DEKAPYEAKAEADKKRYESEKELYIATKA 90
DEK + + EA+K YE + Y T A
Sbjct: 133 DEKTEFIDEYEAEKLEYEKSLKAYHQTPA 161
>At1g04880_2 [R] KOG0381 HMG box-containing protein
Length = 188
Score = 53.9 bits (128), Expect = 4e-08
Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 18 PKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNEDEKAPYEAKAEADKKR 77
PK S Y FF E ++ +PG + R++GE W LNEDEK Y+ KA DK+R
Sbjct: 3 PKPNRSGYNFFFAEQHARLKPLHPGKD-RDISRMIGELWNKLNEDEKLIYQGKAMEDKER 61
Query: 78 YESEKELYIATKAQSE 93
Y +E E Y K +
Sbjct: 62 YRTEMEDYREKKKNGQ 77
>HsM20127432 [B] KOG4715 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin
Length = 411
Score = 53.5 bits (127), Expect = 5e-08
Identities = 24/73 (32%), Positives = 40/73 (53%)
Query: 13 KDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNEDEKAPYEAKAE 72
K P P + L YM ++ + D V+A NP + ++G+I+G W+ L ++EK Y + E
Sbjct: 61 KPPKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYE 120
Query: 73 ADKKRYESEKELY 85
A+K Y + Y
Sbjct: 121 AEKIEYNESMKAY 133
>Hs21264355 [B] KOG4715 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin
Length = 411
Score = 53.5 bits (127), Expect = 5e-08
Identities = 24/73 (32%), Positives = 40/73 (53%)
Query: 13 KDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNEDEKAPYEAKAE 72
K P P + L YM ++ + D V+A NP + ++G+I+G W+ L ++EK Y + E
Sbjct: 61 KPPKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYE 120
Query: 73 ADKKRYESEKELY 85
A+K Y + Y
Sbjct: 121 AEKIEYNESMKAY 133
>At5g23420 [R] KOG0381 HMG box-containing protein
Length = 226
Score = 53.5 bits (127), Expect = 5e-08
Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 6 KKTQRKKKDP---NAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNED 62
KKT +KK N PKR L+A+ F ++ R ++E+ G +I GEKWK+L E+
Sbjct: 85 KKTNDEKKSSSTSNKPKRPLTAFFIFMSDFRKTFKSEHNGSLAKDAAKIGGEKWKSLTEE 144
Query: 63 EKAPYEAKAEADKKRYESEKE 83
EK Y KA K Y E
Sbjct: 145 EKKVYLDKAAELKAEYNKSLE 165
>7291330 [R] KOG0381 HMG box-containing protein
Length = 112
Score = 53.5 bits (127), Expect = 5e-08
Identities = 27/62 (43%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 18 PKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNEDEKAPYEAKAEADKKR 77
PKR LSAYM + N R+ ++ ENPGI +V + GE W+A+ +K+ +EAKA K
Sbjct: 5 PKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAMK--DKSEWEAKAAKAKDD 62
Query: 78 YE 79
Y+
Sbjct: 63 YD 64
>YDR174w [R] KOG0381 HMG box-containing protein
Length = 246
Score = 52.4 bits (124), Expect = 1e-07
Identities = 27/95 (28%), Positives = 54/95 (56%), Gaps = 6/95 (6%)
Query: 1 MAAPRKKTQRK-KKDPNAPKRALSAYMFFANENRDIVRAEN-----PGITFGQVGRILGE 54
+AAP K +RK ++DPNAPK+ L+ + ++ R +R + P ++ ++ + + +
Sbjct: 88 IAAPVKAVRRKIERDPNAPKKPLTVFFAYSAYVRQELREDRQKAGLPPLSSTEITQEISK 147
Query: 55 KWKALNEDEKAPYEAKAEADKKRYESEKELYIATK 89
KWK L+++EK ++ + + Y+ EK Y+ K
Sbjct: 148 KWKELSDNEKEKWKQAYNVELENYQREKSKYLEAK 182
>SPBC28F2.11 [R] KOG0381 HMG box-containing protein
Length = 310
Score = 52.4 bits (124), Expect = 1e-07
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 9 QRKKKDPNAPKRALSAYMFFANENRDIVRAE--NPGITFGQVGRILGEKWKALNEDEKAP 66
+RK +DP PKR SAY F R ++ +V + + EKW +L+ED++
Sbjct: 108 KRKARDPAQPKRPPSAYNLFQKNQRSEIKESLGEKSNDVKEVNKAMHEKWGSLSEDDRKT 167
Query: 67 YEAKAEADKKRYESEKELYIATK 89
YE +A ++ YE E Y A+K
Sbjct: 168 YEEEASKLREAYEEEMAAYNASK 190
>Hs8922565 [BK] KOG1827 Chromatin remodeling complex RSC subunit
RSC1/Polybromo and related proteins
Length = 306
Score = 52.0 bits (123), Expect = 1e-07
Identities = 21/67 (31%), Positives = 42/67 (62%)
Query: 2 AAPRKKTQRKKKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNE 61
+ P+ KK+ + K +S Y+ F++E R +++A++P +FG++ R++G +W+ L
Sbjct: 35 STPKSAKGSAKKEGSKRKINMSGYILFSSEMRAVIKAQHPDYSFGELSRLVGTEWRNLET 94
Query: 62 DEKAPYE 68
+KA YE
Sbjct: 95 AKKAEYE 101
>Hs17486194 [R] KOG0381 HMG box-containing protein
Length = 149
Score = 51.2 bits (121), Expect = 2e-07
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 12 KKDPNAPKRALSAYMFFANENRDIVRAE--NPGITFGQVGRILGEKWKALNEDEKAPYEA 69
K+DP P+ +S+Y FF ++ + + + ++F + + E+WK ++ EK +E
Sbjct: 3 KRDPKQPRGKMSSYAFFVQTAQEEHKKKQLDASVSFSEFSKNCSERWKTMSVKEKGKFED 62
Query: 70 KAEADKKRYESEKELYIATKAQSE 93
A+ADK YE E ++Y K + +
Sbjct: 63 MAKADKACYEREMKIYPYLKGRQK 86
>CE26265 [B] KOG4715 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin
Length = 350
Score = 51.2 bits (121), Expect = 2e-07
Identities = 26/81 (32%), Positives = 43/81 (52%), Gaps = 1/81 (1%)
Query: 2 AAPRKKTQ-RKKKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALN 60
A P + Q + P P+R L YM ++ + VRAENP +G+++G+ W L
Sbjct: 9 ATPARNFQDMSSRGPKVPERPLQPYMRYSRKMWPKVRAENPEAQLWDIGKMIGKYWLDLP 68
Query: 61 EDEKAPYEAKAEADKKRYESE 81
+ EK+ Y+ + E +K YE +
Sbjct: 69 DGEKSHYQHEYELEKADYEKQ 89
>Hs22067233 [R] KOG0381 HMG box-containing protein
Length = 144
Score = 50.1 bits (118), Expect = 5e-07
Identities = 24/56 (42%), Positives = 32/56 (56%)
Query: 11 KKKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNEDEKAP 66
KKKDP APKR S + F +E ++ NPGI+ G V + L E W L++ K P
Sbjct: 82 KKKDPKAPKRLPSGFFLFCSEFCPEDKSTNPGISIGDVAKRLSEIWNNLSDSAKLP 137
>CE05310 [BK] KOG1827 Chromatin remodeling complex RSC subunit RSC1/Polybromo
and related proteins
Length = 1879
Score = 49.7 bits (117), Expect = 7e-07
Identities = 22/53 (41%), Positives = 35/53 (65%)
Query: 20 RALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNEDEKAPYEAKAE 72
++ S Y+ F+ E R + ENP FG+V +I+G +WK L+E++K YE +AE
Sbjct: 1451 KSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQKKHYEMRAE 1503
>7300630 [R] KOG0381 HMG box-containing protein
Length = 257
Score = 48.9 bits (115), Expect = 1e-06
Identities = 28/92 (30%), Positives = 45/92 (48%)
Query: 2 AAPRKKTQRKKKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNE 61
A P K + + P PK+ L+ Y F E R ++A NP IT +V R L + W +
Sbjct: 35 AVPSKTLEEQLGLPPRPKKPLTPYFRFMREQRPKLKAANPQITTVEVVRQLSKNWSDADA 94
Query: 62 DEKAPYEAKAEADKKRYESEKELYIATKAQSE 93
K +A+ + D++ Y E+ Y AT + +
Sbjct: 95 QLKERLQAEFKRDQQIYVEERTKYDATLTEEQ 126
>7291329 [R] KOG0381 HMG box-containing protein
Length = 111
Score = 48.9 bits (115), Expect = 1e-06
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 18 PKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNEDEKAPYEAKAEADKKR 77
PKR LSAYM + NE R+ ++ +NPG + + GE W+ L +K +E KA K+
Sbjct: 6 PKRPLSAYMLWLNETREQIKKDNPGSKVTDIAKRGGELWRGLK--DKTEWEQKAIKMKEE 63
Query: 78 YESEKELYIA 87
Y + Y A
Sbjct: 64 YNKAVKEYEA 73
>Hs8924248 [K] KOG0527 HMG-box transcription factor
Length = 384
Score = 47.4 bits (111), Expect = 3e-06
Identities = 21/70 (30%), Positives = 41/70 (58%)
Query: 3 APRKKTQRKKKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNED 62
+P + +R+ D + +R ++A+M +A + R + +NP + + ++LG+ WK LN
Sbjct: 70 SPAGRGERQAADESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAVLSKMLGKAWKELNAA 129
Query: 63 EKAPYEAKAE 72
EK P+ +AE
Sbjct: 130 EKRPFVEEAE 139
>Hs4505911 [L] KOG1978 DNA mismatch repair protein - MLH2/PMS1/Pms2 family
Length = 932
Score = 47.4 bits (111), Expect = 3e-06
Identities = 25/73 (34%), Positives = 38/73 (51%)
Query: 19 KRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNEDEKAPYEAKAEADKKRY 78
K+ +SA F ++R ENP + + E WK L+E+EK YE KA D +RY
Sbjct: 572 KKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERY 631
Query: 79 ESEKELYIATKAQ 91
S+ + I ++Q
Sbjct: 632 NSQMKRAIEQESQ 644
>At1g76110_2 [R] KOG0381 HMG box-containing protein
Length = 129
Score = 47.0 bits (110), Expect = 5e-06
Identities = 25/84 (29%), Positives = 44/84 (51%), Gaps = 1/84 (1%)
Query: 5 RKKTQRKKKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNEDEK 64
+++ R+++DPN PK S Y FF E +++ P + +++GE W L+ +E+
Sbjct: 33 KRRRSRRREDPNYPKPNRSGYNFFFAEKHCKLKSLYPNKE-REFTKLIGESWSNLSTEER 91
Query: 65 APYEAKAEADKKRYESEKELYIAT 88
Y+ DK+RY+ E Y T
Sbjct: 92 MVYQDIGLKDKERYQRELNEYRET 115
>YMR072w [R] KOG0381 HMG box-containing protein
Length = 183
Score = 46.2 bits (108), Expect = 8e-06
Identities = 25/79 (31%), Positives = 40/79 (49%), Gaps = 1/79 (1%)
Query: 6 KKTQ-RKKKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNEDEK 64
K+TQ R + PKR SAY + ++R ENP + ++ +I GEKW+ L D K
Sbjct: 30 KRTQLRNELIKQGPKRPTSAYFLYLQDHRSQFVKENPTLRPAEISKIAGEKWQNLEADIK 89
Query: 65 APYEAKAEADKKRYESEKE 83
Y ++ + Y+ K+
Sbjct: 90 EKYISERKKLYSEYQKAKK 108
>CE28487 [K] KOG0528 HMG-box transcription factor SOX5
Length = 470
Score = 46.2 bits (108), Expect = 8e-06
Identities = 25/84 (29%), Positives = 42/84 (49%), Gaps = 5/84 (5%)
Query: 1 MAAPRKKTQRKKKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALN 60
+A PR + K PN KR ++A+M +A + R + P + + +ILG +WK ++
Sbjct: 316 VATPRPQA----KSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMS 371
Query: 61 EDEKAP-YEAKAEADKKRYESEKE 83
EK P YE ++ K E +
Sbjct: 372 NSEKQPYYEEQSRLSKLHMEQHPD 395
>CE04135_1 [K] KOG0527 HMG-box transcription factor
Length = 162
Score = 46.2 bits (108), Expect = 8e-06
Identities = 20/61 (32%), Positives = 37/61 (59%)
Query: 12 KKDPNAPKRALSAYMFFANENRDIVRAENPGITFGQVGRILGEKWKALNEDEKAPYEAKA 71
KK N KR ++A+M ++ R + P + ++ + LG +W++L ++EKAP+ A+A
Sbjct: 87 KKSSNHIKRPMNAFMVWSQMERRKICEHQPDMHNAEISKQLGSRWRSLTDEEKAPFVAEA 146
Query: 72 E 72
E
Sbjct: 147 E 147
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.309 0.126 0.348
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,711,695
Number of Sequences: 60738
Number of extensions: 216689
Number of successful extensions: 962
Number of sequences better than 1.0e-05: 63
Number of HSP's better than 0.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 868
Number of HSP's gapped (non-prelim): 89
length of query: 93
length of database: 30,389,216
effective HSP length: 69
effective length of query: 24
effective length of database: 26,198,294
effective search space: 628759056
effective search space used: 628759056
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)