ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII3097 good J KOG2783 Translation, ribosomal structure and biogenesis Phenylalanyl-tRNA synthetase
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII3097 1065621 1064236 -462
(462 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YPR047w [J] KOG2783 Phenylalanyl-tRNA synthetase 598 e-171
SPCC736.03c [J] KOG2783 Phenylalanyl-tRNA synthetase 349 6e-96
7303248 [J] KOG2783 Phenylalanyl-tRNA synthetase 331 2e-90
Hs5729820 [J] KOG2783 Phenylalanyl-tRNA synthetase 322 1e-87
At3g58140 [J] KOG2783 Phenylalanyl-tRNA synthetase 311 2e-84
CE26686 [J] KOG2783 Phenylalanyl-tRNA synthetase 143 6e-34
Hs14770439_2 [J] KOG2783 Phenylalanyl-tRNA synthetase 98 3e-20
ECU07g1660 [J] KOG2784 Phenylalanyl-tRNA synthetase beta subunit 55 2e-07
At4g39280 [J] KOG2784 Phenylalanyl-tRNA synthetase beta subunit 54 5e-07
>YPR047w [J] KOG2783 Phenylalanyl-tRNA synthetase
Length = 474
Score = 598 bits (1543), Expect = e-171
Identities = 301/471 (63%), Positives = 360/471 (75%), Gaps = 21/471 (4%)
Query: 6 ILSTLRPCLRLFSTSNVALQTLSVNGKTYPVSDKT-NVTSSILNLTDRAVYLKPSHPVGI 64
++ T RL+ST V + +NG Y +T NVT SI+ LTDR+++LK SHPVGI
Sbjct: 11 MMKTRTGLYRLYSTLKVP--HVEINGIKYKTDPQTTNVTDSIIKLTDRSLHLKESHPVGI 68
Query: 65 LRSVIEDKLNDPHHSFEIYNDFKPAVTVHENFDSLGFPEDHPGRSKSDTYYLNDCHLLRT 124
LR +IE KLN ++F+I+N+FKP VT ENFDSLGFP+DHPGRSKSDTYY+N+ HLLRT
Sbjct: 69 LRDLIEKKLNSVDNTFKIFNNFKPVVTTMENFDSLGFPKDHPGRSKSDTYYINETHLLRT 128
Query: 125 HTSAHELECFKNINGFVPGHVGKTDKPGFLISADVYRRDEIDRTHYPVFHQMEGGRVWKR 184
HTSAHELECF+ I + K GFLISADVYRRDEID+THYPVFHQMEG +WKR
Sbjct: 129 HTSAHELECFQKIR-----NDSDNIKSGFLISADVYRRDEIDKTHYPVFHQMEGATIWKR 183
Query: 185 EP------DNQHLLKIKEDLERLEKTLADDPVKLVVEDNVS--LEGNPKQEYMTMEEVDL 236
+ ++ KI+ED+ ++E L + VK+ V+D+ E NPKQEYM+ EVDL
Sbjct: 184 TKADVGVKEPMYIEKIREDIRQVENLLNKENVKITVDDDTIPLKENNPKQEYMSDLEVDL 243
Query: 237 CSRHLKRSLELVVLEVFKRKLASM----GNVKGEELKVRWIQAYFPWTAPSWEIEVFWQN 292
CS+HLKRS+EL+V EVF +K++SM N +ELKVRWI AYFPWTAPSWEIEV+WQ
Sbjct: 244 CSQHLKRSIELIVSEVFNKKISSMIKNKANNTPKELKVRWINAYFPWTAPSWEIEVWWQG 303
Query: 293 NWLELCGCGLIREDVLLKAGYEQNQNIGWAFGLGLDRIAMLLFEIPDIRLFWTLDERFHS 352
WLELCGCGLIR+DVLL+AGY+ ++ IGWAFGLGLDRIAMLLFEIPDIRL W+ DERF
Sbjct: 304 EWLELCGCGLIRQDVLLRAGYKPSETIGWAFGLGLDRIAMLLFEIPDIRLLWSRDERFSR 363
Query: 353 QFKEGTINKFKPYSKYPGTIRDVAFWLPTDK-NFDIIHENDLMEIVRNVAGDLVECVKLI 411
QF +G I FKPYSK+PG+ RDVAFWLP DK + +HENDLMEI+RN+AGDLVE VKL+
Sbjct: 364 QFSKGLITSFKPYSKHPGSFRDVAFWLPEDKPDIHQVHENDLMEIIRNIAGDLVESVKLV 423
Query: 412 DSFTHPKTGRKSLCYRINYQSMDRNVTNEEVNELQDKVRDTLVKLYGVELR 462
DSFTHPKTGRKS+CYRINYQSMDRN+TN EVN LQD V LVK Y VELR
Sbjct: 424 DSFTHPKTGRKSMCYRINYQSMDRNLTNAEVNTLQDMVCSKLVKEYSVELR 474
>SPCC736.03c [J] KOG2783 Phenylalanyl-tRNA synthetase
Length = 429
Score = 349 bits (895), Expect = 6e-96
Identities = 191/428 (44%), Positives = 272/428 (62%), Gaps = 33/428 (7%)
Query: 40 TNVTSSILNLTDRAVYLKPSHPVGILRSVIEDKLNDPHHSFEIYNDFK--PAVTVHENFD 97
+NV I + R ++ K HP+ LR ++E + FE+ N K P V+V NFD
Sbjct: 30 SNVPEHIHSKIGRNLFQKEGHPICSLRQLLEQQFQ----KFEMNNVQKESPIVSVETNFD 85
Query: 98 SLGFPEDHPGRSKSDTYYLNDCHLLRTHTSAHELECFKNI--NGFVPGHVGKTDKPGFLI 155
SLGFP+ H RSKSDTYY+N+ LRTHTSAH+ E F + GF K GFLI
Sbjct: 86 SLGFPKTHVSRSKSDTYYMNNKTCLRTHTSAHQPEEFSRLAKEGF--------KKNGFLI 137
Query: 156 SADVYRRDEIDRTHYPVFHQMEGGRVWKREPDNQHLLKIKEDLERLEKTLADDPVKLVVE 215
+ADVYRRDE+D +HYP+FHQMEG VW R K+K DL+++ L+ +V +
Sbjct: 138 TADVYRRDEVDSSHYPIFHQMEGALVWNRNDT----AKMKNDLKKV--ALSPSLKSMVDD 191
Query: 216 DNVSLEG-NPKQEYMTMEEVDLCSRHLKRSLELVVLEVFKRKLASMGNVKGEELKVRWIQ 274
+ +LE N Q+ ++EE S+HLK +L V+ ++ LA + E+++ RW
Sbjct: 192 ETTALETHNDMQDIYSLEETKFVSQHLKDTLTTVIHDLVS--LAPSISSGAEQVRYRWTY 249
Query: 275 AYFPWTAPSWEIEVFWQNNWLELCGCGLIREDVLLKAGYEQNQNIGWAFGLGLDRIAMLL 334
FP+T PS+++E+ W+ WLE+ GCG++++ +L AG N IGWAFG+GL+R+AM+L
Sbjct: 250 DSFPFTKPSFQLEIDWKGKWLEILGCGVVQDRLLKGAGL--NNYIGWAFGIGLERLAMIL 307
Query: 335 FEIPDIRLFWTLDERFHSQFKEGTINKFKPYSKYPGTIRDVAFWLPTDKNFDIIHENDLM 394
+ IPDIRLFW+LDERF QF I+ FKP+SKYP +D+AFW+ D N ND
Sbjct: 308 YGIPDIRLFWSLDERFSKQFLPNKISTFKPFSKYPACFKDIAFWINNDFN-----PNDFY 362
Query: 395 EIVRNVAGDLVECVKLIDSFTHPKTGRKSLCYRINYQSMDRNVTNEEVNELQDKVRDTLV 454
EI+R+V D+VE V LID +T K+G+ SLCYR+NY+SM+R++ NEE+++LQ+K+R+ +
Sbjct: 363 EIIRDVCQDMVESVNLIDQYT-AKSGKTSLCYRVNYRSMERSLRNEEIDKLQEKLRNRVA 421
Query: 455 KLYGVELR 462
VELR
Sbjct: 422 NSLRVELR 429
>7303248 [J] KOG2783 Phenylalanyl-tRNA synthetase
Length = 453
Score = 331 bits (848), Expect = 2e-90
Identities = 181/449 (40%), Positives = 265/449 (58%), Gaps = 44/449 (9%)
Query: 27 LSVNGKTYPVSDKTNVTSSILNLTDRAVYLKPSHPVGILRSVIEDKLNDPHHS------F 80
L V+G TY TNVT IL+ +L+ HP+ I+R I + + + F
Sbjct: 36 LEVSGSTYATDGWTNVTPKILSYVGANKHLQTDHPLSIIRQRIVNYFYGAYRNQRGNPLF 95
Query: 81 EIYNDFKPAVTVHENFDSLGFPEDHPGRSKSDTYYLNDCHLLRTHTSAHELECFKNINGF 140
+Y+ P VTV +NFD+L P DH R KSD YY+N HLLR HT+AH++E
Sbjct: 96 SVYDQMNPVVTVQQNFDNLLIPADHVSRQKSDCYYINQQHLLRAHTTAHQVELIS----- 150
Query: 141 VPGHVGKTDKPGFLISADVYRRDEIDRTHYPVFHQMEGGRVWKREPDNQHLLKIKEDLER 200
G D FL+ +VYRRDEID THYPVFHQ + R+ ++ L + LE
Sbjct: 151 -----GGLDN--FLVVGEVYRRDEIDSTHYPVFHQADAVRLVTKDK----LFERNPGLEL 199
Query: 201 LEKTLAD---DPVKLVVEDNVSLEGNPKQEYMTMEEVDLCSRHLKRSLELVVLEVFKRKL 257
E+T + DP KL++ + ++ KQ T+E V L +K L + ++F
Sbjct: 200 FEETWSGTLADP-KLILPSSKFMD-QTKQPCHTLEAVKLMEHEMKHVLVGLTKDLF---- 253
Query: 258 ASMGNVKGEELKVRWIQAYFPWTAPSWEIEVFWQNNWLELCGCGLIREDVLLKAGYEQNQ 317
G +K RW+ YFP+T PSWE+E+++++NWLE+ GCG++R ++L ++G +Q
Sbjct: 254 -------GPRIKYRWVDTYFPFTQPSWELEIYFKDNWLEVLGCGIMRHEILQRSGV--HQ 304
Query: 318 NIGWAFGLGLDRIAMLLFEIPDIRLFWTLDERFHSQFKEGTIN---KFKPYSKYPGTIRD 374
+IG+AFG+GL+R+AM+LF+IPDIRLFW+ D F SQF E ++ K+KP S YP D
Sbjct: 305 SIGYAFGVGLERLAMVLFDIPDIRLFWSNDSGFLSQFSEKDLHNLPKYKPISHYPQCTND 364
Query: 375 VAFWLPTDKNFDI-IHENDLMEIVRNVAGDLVECVKLIDSFTHPKTGRKSLCYRINYQSM 433
++FWLP D D ND ++VR+VAGD+VE + L+D F HPKTG+ S+C+RI Y+ M
Sbjct: 365 LSFWLPQDIEVDAGFSPNDFYDLVRSVAGDMVEQISLVDKFKHPKTGKSSVCFRIVYRHM 424
Query: 434 DRNVTNEEVNELQDKVRDTLVKLYGVELR 462
+R +T EVNE+ ++ V + V++R
Sbjct: 425 ERTLTQAEVNEIHKQIASASVDSFNVQIR 453
>Hs5729820 [J] KOG2783 Phenylalanyl-tRNA synthetase
Length = 451
Score = 322 bits (824), Expect = 1e-87
Identities = 178/461 (38%), Positives = 258/461 (55%), Gaps = 54/461 (11%)
Query: 11 RPCLRLFSTSNVALQTLSVNGKTYPVSDKTNVTSSILNLTDRAVYLKPSHPVGILRSVIE 70
RP +T + + GK+YP D +N+T +L R ++ + HP+ +++ ++
Sbjct: 35 RPPAAECATQRAPGSVVELLGKSYPQDDHSNLTRKVLTRVGRNLHNQQHHPLWLIKERVK 94
Query: 71 DKLNDPHHS------FEIYNDFKPAVTVHENFDSLGFPEDHPGRSKSDTYYLNDCHLLRT 124
+ + F +Y++ P VT +NFDSL P DHP R K D YYLN H+LR
Sbjct: 95 EHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKGDNYYLNRTHMLRA 154
Query: 125 HTSAHELECFKNINGFVPGHVGKTDKPGFLISADVYRRDEIDRTHYPVFHQMEGGRVWKR 184
HTSAH+ + H G FL+ DVYRRD+ID HYP+FHQ+E R++ +
Sbjct: 155 HTSAHQWDLL---------HAGLD---AFLVVGDVYRRDQIDSQHYPIFHQLEAVRLFSK 202
Query: 185 EPDNQHLLKIKEDLERLEKTLADDPVKLVVEDNVSLEGNPKQEYMTMEEVDLCSRHLKRS 244
+ +K E L+ E+ S KQE TME V L LK++
Sbjct: 203 H-ELFAGIKDGESLQLFEQ---------------SSRSAHKQETHTMEAVKLVEFDLKQT 246
Query: 245 LELVVLEVFKRKLASMGNVKGEELKVRWIQAYFPWTAPSWEIEVFWQNNWLELCGCGLIR 304
L ++ +F G+EL++RW+ YFP+T PS+E+E+ + WLE+ GCG++
Sbjct: 247 LTRLMAHLF-----------GDELEIRWVDCYFPFTHPSFEMEINFHGEWLEVLGCGVME 295
Query: 305 EDVLLKAGYEQNQNIGWAFGLGLDRIAMLLFEIPDIRLFWTLDERFHSQFKEGTIN---K 361
+ ++ AG + IGWAFGLGL+R+AM+L++IPDIRLFW DERF QF IN K
Sbjct: 296 QQLVNSAGAQDR--IGWAFGLGLERLAMILYDIPDIRLFWCEDERFLKQFCVSNINQKVK 353
Query: 362 FKPYSKYPGTIRDVAFWLPTDKNFDIIHENDLMEIVRNVAGDLVECVKLIDSFTHPKTGR 421
F+P SKYP I D++FWLP++ END ++VR + GDLVE V LID F HPKT +
Sbjct: 354 FQPLSKYPAVINDISFWLPSEN----YAENDFYDLVRTIGGDLVEKVDLIDKFVHPKTHK 409
Query: 422 KSLCYRINYQSMDRNVTNEEVNELQDKVRDTLVKLYGVELR 462
S CYRI Y+ M+R ++ EV + +++ V+L GVE R
Sbjct: 410 TSHCYRITYRHMERTLSQREVRHIHQALQEAAVQLLGVEGR 450
>At3g58140 [J] KOG2783 Phenylalanyl-tRNA synthetase
Length = 435
Score = 311 bits (796), Expect = 2e-84
Identities = 178/428 (41%), Positives = 245/428 (56%), Gaps = 80/428 (18%)
Query: 41 NVTSSILNLTDRAVYLKPSHPVGILRSVIEDKLNDPH-HSFEIYNDFKPAVTVHENFDSL 99
NV SI + ++ + HP+GIL++ I D + + + FE + D P VT +NFD +
Sbjct: 82 NVPDSIFSKLGMQLHRRDKHPIGILKNAIYDYFDSNYSNKFEKFEDLSPIVTTKQNFDDV 141
Query: 100 GFPEDHPGRSKSDTYYLNDCHLLRTHTSAHELECFKNINGFVPGHVGKTDKPGFLISADV 159
P DH RS +DTYY++ +LR HTSAH+ E + GH FL++ DV
Sbjct: 142 LVPADHVSRSLNDTYYVDSQTVLRCHTSAHQAELLRK------GH------SRFLVTGDV 189
Query: 160 YRRDEIDRTHYPVFHQMEGGRVWKREPDN----QHLLKIKEDLERLEKTLADDPVKLVVE 215
YRRD ID THYPVFHQMEG V+ E N L EDL++ + LA
Sbjct: 190 YRRDSIDSTHYPVFHQMEGFCVFSPEDWNGSGKDSTLYAAEDLKKCLEGLA--------- 240
Query: 216 DNVSLEGNPKQEYMTMEEVDLCSRHLKRSLELVVLEVFKRKLASMGNVKGEELKVRWIQA 275
RHL S+E+ RW+
Sbjct: 241 -----------------------RHLFGSVEM-----------------------RWVDT 254
Query: 276 YFPWTAPSWEIEVFWQNNWLELCGCGLIREDVLLKAGYEQNQNIGWAFGLGLDRIAMLLF 335
YFP+T PS+E+E++++ +WLE+ GCG+ + +L ++G E N + WAFGLGL+R+AM+LF
Sbjct: 255 YFPFTNPSFELEIYFKEDWLEVLGCGVTEQVILKQSGLENN--VAWAFGLGLERLAMVLF 312
Query: 336 EIPDIRLFWTLDERFHSQFKEGTIN-KFKPYSKYPGTIRDVAFWLPTDKNFDIIHENDLM 394
+IPDIR FW+ DERF SQF +G + KFKPYSKYP +D++FW+ D+ EN+
Sbjct: 313 DIPDIRFFWSSDERFTSQFGKGELGVKFKPYSKYPPCYKDISFWIS-----DLFTENNFC 367
Query: 395 EIVRNVAGDLVECVKLIDSFTHPKTGRKSLCYRINYQSMDRNVTNEEVNELQDKVRDTLV 454
E+VR +AGDLVE VKLID FT+ K G S CYRI ++SM+R++T+EEVN+LQ KVRD +
Sbjct: 368 EVVRGIAGDLVEEVKLIDQFTNKKKGLTSHCYRIVFRSMERSLTDEEVNDLQSKVRDEVQ 427
Query: 455 KLYGVELR 462
K VELR
Sbjct: 428 KKLNVELR 435
>CE26686 [J] KOG2783 Phenylalanyl-tRNA synthetase
Length = 374
Score = 143 bits (360), Expect = 6e-34
Identities = 90/274 (32%), Positives = 140/274 (50%), Gaps = 42/274 (15%)
Query: 25 QTLSVNGKTYPVSDKTNVTSSILNLTDRAVYLKPSHPVGILRSVIEDKLNDPHHS----- 79
+ ++G+ Y N++ + L DR + + S+P+ +L+ I D ++ +
Sbjct: 47 EVFELDGRKYTPDALYNLSPGVRRLLDRRILQESSNPLNLLKRRIVDYVHQTYRKPGNRS 106
Query: 80 --FEIYNDFKPAVTVHENFDSLGFPEDHPGRSKSDTYYLNDCHLLRTHTSAHELECFKNI 137
F I VT ++NFDSL PEDH R SDTYY+N H LR HTSAH+
Sbjct: 107 PLFTICESEPRVVTTYQNFDSLLTPEDHVSRRPSDTYYVNHEHCLRAHTSAHQ------- 159
Query: 138 NGFVPGHVGKTDKPGFLISADVYRRDEIDRTHYPVFHQMEGGRVWKREPDNQHLLKIKED 197
++ ++ FL+ DVYRRDE+DRTHYP FHQ+EG R++ ++ LL K D
Sbjct: 160 -----HNLMQSGLDAFLVIGDVYRRDEVDRTHYPCFHQIEGVRLYSKD----ELLGKKPD 210
Query: 198 LERLEKTLADDPVKLVVEDNVSLEGNP-KQEYMTMEEVDLCSRHLKRSLELVVLEVFKRK 256
+ + + + + + E +P KQE T++ LK+ LE + E+F
Sbjct: 211 GKNVAELFS-------TAASAATERSPEKQEKHTLDATKAAEIQLKQFLENLCDELF--- 260
Query: 257 LASMGNVKGEELKVRWIQAYFPWTAPSWEIEVFW 290
G++ + RW+ AYFP+T PSWE+EV +
Sbjct: 261 --------GKDAEKRWVDAYFPFTHPSWELEVIF 286
Score = 72.4 bits (176), Expect = 1e-12
Identities = 42/120 (35%), Positives = 71/120 (59%), Gaps = 6/120 (5%)
Query: 347 DERFHSQFKEGTINKFKPYSKYPG----TIRDVAFWLPTDKNFDIIHENDLMEIVRNVAG 402
DE F ++ ++ + P++ +P I D++F+LP+ F+ + +D+ + +R V G
Sbjct: 257 DELFGKDAEKRWVDAYFPFT-HPSWELEVIFDISFFLPSTVQFNDM-TSDVYDTIRTVGG 314
Query: 403 DLVECVKLIDSFTHPKTGRKSLCYRINYQSMDRNVTNEEVNELQDKVRDTLVKLYGVELR 462
+LVE VKL D F + K +KS YRI Y+S +R +T EEVN + ++ +L +GV LR
Sbjct: 315 ELVEQVKLTDEFENKKKEKKSQTYRIVYRSHERALTKEEVNVIHKQIEQSLASSFGVTLR 374
>Hs14770439_2 [J] KOG2783 Phenylalanyl-tRNA synthetase
Length = 136
Score = 97.8 bits (242), Expect = 3e-20
Identities = 49/127 (38%), Positives = 74/127 (57%), Gaps = 4/127 (3%)
Query: 325 LGLDRIAMLLFEIPDIRLFWTLDERFHSQFKEGTINKFKPYSKYPGT-IRDVAFWLPTDK 383
+ LD +AML++ I D R+ WT D RF F G I FK +S YP + DV+FW+ K
Sbjct: 1 MNLDLLAMLVWCISDWRMLWTFDNRFLKNFVPGKIEPFKSHSLYPPCYVHDVSFWIDQKK 60
Query: 384 NFDIIHENDLMEIVRNVAGDLVECVKLIDSFTHPKTGRKSLCYRINYQSMDRNVTNEEVN 443
FD E + + R V+ D + ++ + F HPKT + SLCYR+ YQ+ D+ +T ++V
Sbjct: 61 GFD---ELEFHTVARAVSQDTIISIQFLSRFQHPKTQQVSLCYRLTYQTCDKALTQQQVA 117
Query: 444 ELQDKVR 450
+Q + R
Sbjct: 118 SMQSQFR 124
>ECU07g1660 [J] KOG2784 Phenylalanyl-tRNA synthetase beta subunit
Length = 475
Score = 55.1 bits (131), Expect = 2e-07
Identities = 60/250 (24%), Positives = 114/250 (45%), Gaps = 36/250 (14%)
Query: 95 NFDSLGFPEDHPGRSKSDTYYLNDCHLLRTHTSAHELECFKNINGFVPGHVGKTDKPGFL 154
NFD+L P++HP R DT++L + L S + E + G GK + G++
Sbjct: 238 NFDALFQPQNHPSRDAHDTFFLLNPELSTDFPSDYLKEVGETHRG------GKYNSLGYM 291
Query: 155 ISADVYR-RDEIDRTHYPVFHQMEGGRVWKREPDNQHLLKIKEDLERLEKTLADDPVKLV 213
+ D+ + I RTH R+ K+E L I +
Sbjct: 292 SNWDIKEAQKNILRTHTTSVSARNLYRLAKKEFKPAKLFSIDK----------------- 334
Query: 214 VEDNVSLEGNPKQEYMTMEEVDLCSRHLKRSLELVVLEVFKRKLASMGNVKGEELKVRWI 273
V N +++ E+ +E + + + L + + +L F +L MG+ +R+
Sbjct: 335 VFRNETVDATHLAEFHQVEGL-VVGKGLNLTHLMGILREFFNRL-GMGD-------IRFK 385
Query: 274 QAYFPWTAPSWEIEVFWQ--NNWLELCGCGLIREDVLLKAGYEQNQNIGWAFGLGLDRIA 331
A+ P+T PS E+ + + + W+E+ G+ R ++L G++ + ++ A+GL L+R A
Sbjct: 386 PAFNPYTEPSMEVFGYHKGMDRWIEVGNSGVFRPEMLRPMGFDSDVSV-VAWGLSLERPA 444
Query: 332 MLLFEIPDIR 341
M+ + + +IR
Sbjct: 445 MIKYGLKNIR 454
>At4g39280 [J] KOG2784 Phenylalanyl-tRNA synthetase beta subunit
Length = 428
Score = 53.9 bits (128), Expect = 5e-07
Identities = 68/260 (26%), Positives = 106/260 (40%), Gaps = 55/260 (21%)
Query: 95 NFDSLGFP-EDHPGRSKSDTYYLNDCHLLRTHTSAHELECFKNINGFVPGHVGKTDKPGF 153
NF + G P + HP R DT++L RT
Sbjct: 189 NFKAKGAPPQQHPARDSHDTFFLKVPSTTRT----------------------------- 219
Query: 154 LISADVYRRDEIDRTHYPVFHQMEGGRV-WKREPDNQHLLKIKEDL--ERLEKTLADDPV 210
+ D R + R H + G WKRE N++LL+ R+ LA P
Sbjct: 220 -LPEDYVER--VKRVHESGGYGSRGYNYDWKREEANKNLLRTHTTAVSSRMLYALAQKPF 276
Query: 211 ---KLVVEDNV----SLEGNPKQEYMTMEEVDLCSRHLKRSLELVVLEVFKRKLASMGNV 263
K D V +++ E+ +E + +C R L + VLE F +L
Sbjct: 277 VPKKYFSIDRVFRNEAVDRTHLAEFHQIEGL-ICDRGLTLGDLIGVLEDFFSRLGMS--- 332
Query: 264 KGEELKVRWIQAYFPWTAPSWEIEVFWQ--NNWLELCGCGLIREDVLLKAGYEQNQNIGW 321
K+R+ AY P+T PS EI + + W+E+ G+ R ++LL G ++ +
Sbjct: 333 -----KLRFKPAYNPYTEPSMEIFSYHEGLGKWVEIGNSGMFRPEMLLPMGLPEDVRV-I 386
Query: 322 AFGLGLDRIAMLLFEIPDIR 341
A+GL L+R M+L+ I +IR
Sbjct: 387 AWGLSLERPTMILYGIDNIR 406
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.320 0.138 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,066,466
Number of Sequences: 60738
Number of extensions: 1395660
Number of successful extensions: 3212
Number of sequences better than 1.0e-05: 9
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3165
Number of HSP's gapped (non-prelim): 13
length of query: 462
length of database: 30,389,216
effective HSP length: 110
effective length of query: 352
effective length of database: 23,708,036
effective search space: 8345228672
effective search space used: 8345228672
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)