ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII3099 good J KOG3422 Translation, ribosomal structure and biogenesis Mitochondrial ribosomal protein L16
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII3099 1065991 1066653 221
(221 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YBL038w [J] KOG3422 Mitochondrial ribosomal protein L16 331 6e-91
SPBC1105.03c [J] KOG3422 Mitochondrial ribosomal protein L16 164 9e-41
AtCh059 [J] KOG3422 Mitochondrial ribosomal protein L16 77 2e-14
AtMi007 [J] KOG3422 Mitochondrial ribosomal protein L16 62 6e-10
>YBL038w [J] KOG3422 Mitochondrial ribosomal protein L16
Length = 232
Score = 331 bits (848), Expect = 6e-91
Identities = 154/199 (77%), Positives = 180/199 (90%)
Query: 23 ARRFTHEYAPRFKNQTKKQKGRVPVRTGGSTKGNSLQFGQFGLRLKSEGVRLTALQLKEA 82
ARRF HEYAPRFK KKQKGRVPVRTGGS KG++LQFG++GLRLKSEG+R++A QLKEA
Sbjct: 34 ARRFKHEYAPRFKIVQKKQKGRVPVRTGGSIKGSTLQFGKYGLRLKSEGIRISAQQLKEA 93
Query: 83 DNAIMRYVRPLNNGQLWRRLCTNIAVCIKGNETRMGKGKGGFDHWMVRVPTGKVIFEMAG 142
DNAIMRYVRPLNNG LWRRLCTN+AVCIKGNETRMGKGKGGFDHWMVRVPTGK++FE+ G
Sbjct: 94 DNAIMRYVRPLNNGHLWRRLCTNVAVCIKGNETRMGKGKGGFDHWMVRVPTGKILFEING 153
Query: 143 DNLHEKVAREAFRKAATKLPGLYEFISKDSLVRVGIKSVKDPKDDPKINYFEELKKKPTK 202
D+LHEKVAREAFRKA TKLPG+YEF+S DSLVRVG+ S K+PKDDP N+++E KKP+K
Sbjct: 154 DDLHEKVAREAFRKAGTKLPGVYEFVSLDSLVRVGLHSFKNPKDDPVKNFYDENAKKPSK 213
Query: 203 EYITKLKSQQPEYRMFRAR 221
+Y+ LKSQ+P+Y++FR R
Sbjct: 214 KYLNILKSQEPQYKLFRGR 232
>SPBC1105.03c [J] KOG3422 Mitochondrial ribosomal protein L16
Length = 215
Score = 164 bits (415), Expect = 9e-41
Identities = 80/196 (40%), Positives = 121/196 (60%), Gaps = 7/196 (3%)
Query: 6 FKTGFRSLNPLESLQV----TARRFTHEYAPRFKNQTKKQKGRVPVRTGGSTKGNSLQFG 61
F +G L LQ+ T R+ H+YAPR K QKGRVP+ GGS +G L++G
Sbjct: 12 FFSGILGPTRLNGLQMPPIQTMVRWGHQYAPRSIRNQKAQKGRVPIPIGGSLRGTQLEWG 71
Query: 62 QFGLRLKSEGVRLTALQLKEADNAIMRYVRPLNNGQLWRRLCTNIAVCIKGNETRMGKGK 121
++G+RLK +R A QL+ A+ + R ++P+ +++ R C N+ VC+KGNETRMGKGK
Sbjct: 72 EYGMRLKDRSIRFHAKQLETAEQILKRILKPIKAARVYTRFCCNVPVCVKGNETRMGKGK 131
Query: 122 GGFDHWMVRVPTGKVIFEMAGDNLHEKVAREAFRKAATKLPGLYEFISKDSLVRVGIKSV 181
G F++W R+P G+V+FE+ GD + +++A A ++AA LPG YE I K + R+G +
Sbjct: 132 GAFEYWAARIPIGRVLFEIGGDGMRKELAEHALKQAAFHLPGKYEIIVKQTPKRLGTTLI 191
Query: 182 KD---PKDDPKINYFE 194
+ + K+NY E
Sbjct: 192 HETPITTETSKMNYQE 207
>AtCh059 [J] KOG3422 Mitochondrial ribosomal protein L16
Length = 135
Score = 77.0 bits (188), Expect = 2e-14
Identities = 47/138 (34%), Positives = 81/138 (58%), Gaps = 8/138 (5%)
Query: 31 APRFKNQTKKQKGRVPVRTGGSTKGNSLQFGQFGLRLKSEGVRLTALQLKEADNAIMRYV 90
+P+ K+ +GR+ G S++GN + FG++ L+ E +T+ Q++ A+ R V
Sbjct: 3 SPKRTRFRKQHRGRLK---GISSRGNRICFGRYALQTL-EPAWITSRQIEAGRRAMTRNV 58
Query: 91 RPLNNGQLWRRLCTNIAVCIKGNETRMGKGKGGFDHWMVRVPTGKVIFEMAGDNLHEKVA 150
R G++W R+ + V ++ ETRMG GKG ++W+ V GK+++EM G + E +A
Sbjct: 59 R--RGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGG--VPENIA 114
Query: 151 REAFRKAATKLPGLYEFI 168
R+A AA+K+P +FI
Sbjct: 115 RKAISIAASKMPIKTQFI 132
>AtMi007 [J] KOG3422 Mitochondrial ribosomal protein L16
Length = 179
Score = 62.0 bits (149), Expect = 6e-10
Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 11/135 (8%)
Query: 32 PRFKNQTKKQKGRVPVRTGGSTKGNSLQFGQFGLRLKSEGVRLTALQLKEADNAIMRYVR 91
P+ +K +KGR G G L FG++G + G RL+ ++ A AI+ +
Sbjct: 39 PKRTKYSKYRKGRCS--RGCKPDGTKLGFGRYGTKSCKAG-RLSYRAIEAARRAIIGHFH 95
Query: 92 PL------NNGQLWRRLCTNIAVCIKGNETRMGKGKGGFDHWMVRVPTGKVIFEMAGDNL 145
NG++W R+ ++ + K E RMG+GKG W+ RV TG++ FEM G +L
Sbjct: 96 RAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSL 155
Query: 146 HEKVAREAFRKAATK 160
AR+A AA K
Sbjct: 156 AN--ARQAATLAAHK 168
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.320 0.136 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,474,899
Number of Sequences: 60738
Number of extensions: 569234
Number of successful extensions: 1357
Number of sequences better than 1.0e-05: 4
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1353
Number of HSP's gapped (non-prelim): 4
length of query: 221
length of database: 30,389,216
effective HSP length: 102
effective length of query: 119
effective length of database: 24,193,940
effective search space: 2879078860
effective search space used: 2879078860
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)