ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII3128 good L KOG1625 Replication, recombination and repair DNA polymerase alpha-primase complex, polymerase-associated subunit B
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII3128 1076984 1075038 -649
(649 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YBL035c [L] KOG1625 DNA polymerase alpha-primase complex polymer... 654 0.0
SPCC553.09c [L] KOG1625 DNA polymerase alpha-primase complex pol... 298 1e-80
At1g67630 [L] KOG1625 DNA polymerase alpha-primase complex polym... 131 4e-30
Hs20127448 [L] KOG1625 DNA polymerase alpha-primase complex poly... 125 2e-28
7301561 [L] KOG1625 DNA polymerase alpha-primase complex polymer... 106 1e-22
ECU10g1080 [L] KOG1625 DNA polymerase alpha-primase complex poly... 97 8e-20
CE28840 [L] KOG1625 DNA polymerase alpha-primase complex polymer... 97 1e-19
>YBL035c [L] KOG1625 DNA polymerase alpha-primase complex
polymerase-associated subunit B
Length = 705
Score = 654 bits (1686), Expect = 0.0
Identities = 346/710 (48%), Positives = 459/710 (63%), Gaps = 66/710 (9%)
Query: 1 MSIENELVSKFGASADKAEVISTLQHYMKIYDLSVDEIYIKWEQFSYHNKDKYAVNSYSD 60
MS ++++ FG ADK E+I+ L++ K++ LSV+++YIKWEQFS N+ + +
Sbjct: 1 MSGSIDVITHFGPDADKPEIITALENLTKLHALSVEDLYIKWEQFS--NQRRQTHTDLTS 58
Query: 61 QILQEFKDYIQQQMEKKVNTSIVLNPSINSSIKKPKMLIPSTNSPSIFGLGIPNTPTLKK 120
+ + EFK ++Q QMEK+ N I + +N+S KKP ++ S NS +FGL IP TPTLKK
Sbjct: 59 KNIDEFKQFLQLQMEKRAN-QISSSSKVNTSTKKP-VIKKSLNSSPLFGLSIPKTPTLKK 116
Query: 121 RRLEAGTPTEASKVSPSAA---------NSTSILNXXXXXXXXXXXXXXNLKNASEPD-- 169
R+L SK + + NS+ L L +A D
Sbjct: 117 RKLHGPFSLSDSKQTYNVGSEAETNEKGNSSLKLEFTPGMAEDAVGDSAPLSHAKSSDAK 176
Query: 170 -------------------------KCLVTLNVDNVAKAEG--------IDFDNDSKVKI 196
+ L +LN +N+ + G + + ++VK+
Sbjct: 177 TPGSSTFQTPTTNTPTTSRQNVPAGEILDSLNPENIEISSGNPNVGLLSTEEPSYNQVKV 236
Query: 197 SPFYDPKKYKFRTMRQSLLDTADVLDEQIDIFSEIIQKHYNLKPSDIGDPTFQQQSEVYT 256
PFYD KKYKFRTMRQ+L + +DVLD+QI+ F++IIQ HY L P+D DPT Q QSE+Y
Sbjct: 237 EPFYDAKKYKFRTMRQNLQEASDVLDDQIESFTKIIQNHYKLSPNDFADPTIQSQSEIYA 296
Query: 257 VGRIVPDSVNAEGPLNVDSLAIETSRSTGIGRRIRLNFEKIQNLSVFPGQIVALKGKNAN 316
VGRIVPDS + LN +SL++ETSR G+GRR+RL+ ++ LS F GQIVA KGKNAN
Sbjct: 297 VGRIVPDSPTYDKFLNPESLSLETSRMGGVGRRVRLDLSQVNELSFFLGQIVAFKGKNAN 356
Query: 317 GEYFVVEDILKIPYLNSPVSDSEMLQDSQITLNNQPMKVVVTAGSYTPANNLDFSNLEHF 376
G+YF V IL +PY NSPVS S+ LQ+ Q L +KV+VT G Y +N L+ F
Sbjct: 357 GDYFTVNSILPLPYPNSPVSTSQELQEFQANLEGSSLKVIVTCGPYFANDNFSLELLQEF 416
Query: 377 VDRINTSIKPHILIMFGPFLDITHQLISSGNIPDFPNLKQQPKTLDEVFIKVIAPILKRI 436
+D IN +KPH+LIMFGPF+DITH LI+SG +P+FP K QPKTLDE+F+K+ PILK I
Sbjct: 417 IDSINNEVKPHVLIMFGPFIDITHPLIASGKLPNFPQFKTQPKTLDELFLKLFTPILKTI 476
Query: 437 NPKIQVILIPSTKEVTSKHAAYPQDSLDRKYLSLPK-NFKCFTNPSTFQLNEIFFGCSNN 495
+P IQ +LIPSTK+ S HAAYPQ SL RK L LPK NFKC NPS+FQ+NEI+FGCSN
Sbjct: 477 SPHIQTVLIPSTKDAISNHAAYPQASLIRKALQLPKRNFKCMANPSSFQINEIYFGCSNV 536
Query: 496 DIYKDLKEVTKGGNVFQRNRFDRVSEHILEQRRYYPVFPGGIRTR-------------KV 542
D +KDLKEV KGG R R DRVSEHIL+QRRYYP+FPG IRTR +
Sbjct: 537 DTFKDLKEVIKGGTTSSRYRLDRVSEHILQQRRYYPIFPGSIRTRIKPKDVSTKKETNDM 596
Query: 543 EGKNGKPVFEHIAGADLDLPYLGLTEFIGGIIPDVILIPSELTHFARVVQNVIMLNPGSF 602
E K K V+EHI+GADLD+ YLGLTEF+GG PD+++IPSEL HFARVVQNV+++NPG F
Sbjct: 597 ESKEEK-VYEHISGADLDVSYLGLTEFVGGFSPDIMIIPSELQHFARVVQNVVVINPGRF 655
Query: 603 IRPNGGRGTYIEMSIEAPDMENEKMTKV---NDVYLHNLWKRSRIDILTA 649
IR G RG+Y +++++ PD+E+ K+T V VYLHN+WKR+R+D++ +
Sbjct: 656 IRATGNRGSYAQITVQCPDLEDGKLTLVEGEEPVYLHNVWKRARVDLIAS 705
>SPCC553.09c [L] KOG1625 DNA polymerase alpha-primase complex
polymerase-associated subunit B
Length = 574
Score = 298 bits (764), Expect = 1e-80
Identities = 196/640 (30%), Positives = 326/640 (50%), Gaps = 81/640 (12%)
Query: 16 DKAEVISTLQHYMKIYDLSVDEIYIKWEQFSYH--NKDKYAVNSYSDQILQEFKDYIQQQ 73
D E++ ++I ++ ++ KWE + N K ++++ + F ++ Q
Sbjct: 6 DDEELLDERNKLLQICNMDEQTMFYKWESWCLQRGNTPKLDLDTF-----KAFAKDMKFQ 60
Query: 74 MEKKVNTSIVLNPSINSSIKKPKMLIPSTNSPSIFGLGIPNTPTLKKRRLEAGTPTEASK 133
ME++V ++ NP SIK+ IP N SI GL + T + E+ TE +
Sbjct: 61 MERQVKATLKQNPE-RKSIKQ----IPGMNIDSILGLPVKTTASGDSLMQESKPSTETFE 115
Query: 134 VSPS-AANSTSILNXXXXXXXXXXXXXXNLKNASEPDKCLVTLNVDNVAKAEGIDFDNDS 192
++ S A +LN S P K ++ N
Sbjct: 116 LNSSDAGRVLEVLNKELKIVT---------SKPSAPSKLVIVAN---------------- 150
Query: 193 KVKISPFYDPKKYKFRTMRQSLLDTADVLDEQIDIFSEIIQKHYNLKPSDIGDPTFQQQS 252
+D K + +R M Q L D+++VLD++I++FS + + YN+ D+ +P+ Q
Sbjct: 151 -------FDLKAFNYRIMYQKLYDSSEVLDDRIELFSALTCRKYNISDEDLANPSELTQE 203
Query: 253 EVYTVGRIVPDSVNAEGPLNVDSLAIETSRSTGIGRRIRLNFEKIQNLSVFPGQIVALKG 312
V VGRIV +S N G LN +S+ +E+SR G G R+RL + + + S+FPGQIV++KG
Sbjct: 204 PVVVVGRIVVESTNLGGRLNQNSILLESSRRLGAGVRVRLKVDDLPSYSIFPGQIVSVKG 263
Query: 313 KNANGEYFVVEDILKIPYLNSPVSDSEMLQDSQITLNNQPMKVVVTAGSYTPANNLDFSN 372
N +G F+ ++IL IP L P S + NNQP+ + + +G ++ ++L FS
Sbjct: 264 SNPSGNMFIAKEILPIPPLPFPSSSKQEHATFVANTNNQPISIYIASGPWSLRDDLSFSP 323
Query: 373 LEHFVDRINTSIKPHILIMFGPFLDITHQLISSGNIPDFPNLKQQPKTLDEVFIKVIAPI 432
L+ + +N + ++I+ GPFLDI H LI +GNI +L+E+F + + PI
Sbjct: 324 LKSMISYVNKN-PVDLVILCGPFLDINHILIRTGNITG-----TSATSLEELFKERVTPI 377
Query: 433 LKRINPKIQVILIPSTKEVTSKHAAYPQDSLDRKYLSLPKNFKCFTNPSTFQLNEIFFGC 492
L ++ ILIP + S H A+PQD+ +R L LP NFKCF NP F +N++ FG
Sbjct: 378 LSQLT--CPCILIPHINDAASDHPAWPQDAFNRVALGLPSNFKCFPNPCMFSINDVVFGV 435
Query: 493 SNNDIY-----KDLKEVTKGGNVFQRNRFDRVSEHILEQRRYYPVFPGGIRTRKVEGKNG 547
S NDI ++L + GN+F R+ H+L QR +YP+FPGG
Sbjct: 436 STNDILLHTSREELFRLPSHGNLFA-----RLVSHVLHQRHFYPLFPGG----------- 479
Query: 548 KPVFEHIAGADLDLPYLGLTEFIGGIIPDVILIPSELTHFARVVQNVIMLNPGSFIRPNG 607
E ++LD+ +L L EF+ +PD++++PS+L +F + V+NV+ LNPG +
Sbjct: 480 --SLEKCNPSNLDIAHLKLGEFL-NTMPDILILPSDLRYFVKNVENVVSLNPGKATK-GI 535
Query: 608 GRGTYIEMSIEAPDMENEKMTKVNDVYLHNLWKRSRIDIL 647
GT+ +++I ++ + ++ Y H +W R++ +IL
Sbjct: 536 NLGTFAKLTIAPLELGDNGS---SNHYSHRVWLRTKAEIL 572
>At1g67630 [L] KOG1625 DNA polymerase alpha-primase complex
polymerase-associated subunit B
Length = 620
Score = 131 bits (329), Expect = 4e-30
Identities = 90/397 (22%), Positives = 179/397 (44%), Gaps = 59/397 (14%)
Query: 245 DPTFQQQSEVYTVGRIVPDSVNAEGPLNVDSLAIETSRSTGIGRRIRLNFEKIQNLSVFP 304
DP Q ++ VG I D EG LN S+ +++S G+R+ ++ +++ S+FP
Sbjct: 243 DPAVASQRSIFAVGMICCDG---EGHLNDKSILLQSSAERTSGQRVPVDLKRLDQFSIFP 299
Query: 305 GQIVALKGKNANGEYFVVEDIL-----------KIPYLNSPVSDSEMLQDSQITLNNQPM 353
GQ+V ++G+N +G Y +L +P + D E+L ++ + +
Sbjct: 300 GQVVGIEGQNPSGHYLTASKLLDSVPLTLTVDVDLPPAKRQILDQEVLVPAEESCQKSEV 359
Query: 354 KVVVTAGSYTPANNLDFSNLEHFVDRINTSIKPHILIMFGPFLDITHQLISSGNIPDFPN 413
++ +G +T ++NL F L + P +L++ GPF+D H I G +
Sbjct: 360 SFIIASGPFTTSDNLLFEPLNELLAYAKRK-PPQLLVLLGPFVDSEHPEIKKGAV----- 413
Query: 414 LKQQPKTLDEVF----IKVIAPILKRINPKIQVILIPSTKEVTSKHAAYPQDSLDRKYLS 469
T +E+F ++ + ++ + +++V+L+PS ++ + +PQ D
Sbjct: 414 ----DATFNEIFQVEVLRKLQDYVEFMGSEVRVVLVPSIRD-ANHDFIFPQPPFDIHIPD 468
Query: 470 L--------PKNFKCFTNPSTFQLNEIFFGCSNNDIYKDL--KEVTKGGNVFQRNRFDRV 519
L P + K + +++ C D+ K L +E++K + +R R+
Sbjct: 469 LEHQFSSEKPYSLKSLQHKMLTGYSQVKVSCCTVDVLKQLSGEEMSKNPSGVPTDRMSRL 528
Query: 520 SEHILEQRRYYPVFPGGIRTRKVEGKNGKPVFEHIAGADLDLPYLGLTEFIGGIIPDVIL 579
+ H+L QR +YP++P P +A L + IPD++L
Sbjct: 529 ASHLLRQRSFYPLYP---------PPESLPYDSSLAPKALQI----------SSIPDILL 569
Query: 580 IPSELTHFARVVQNVIMLNPGSFIRPNGGRGTYIEMS 616
+PS++ +F + + +NPG + G GT++E++
Sbjct: 570 LPSDMRYFVKDAAKCVCVNPGRLAKGEGA-GTFVELT 605
>Hs20127448 [L] KOG1625 DNA polymerase alpha-primase complex
polymerase-associated subunit B
Length = 598
Score = 125 bits (315), Expect = 2e-28
Identities = 102/422 (24%), Positives = 189/422 (44%), Gaps = 56/422 (13%)
Query: 207 FRTMRQSLLDTADVLDEQIDIFSEIIQKHYNLKP-SDIGDPTFQQQSEVYTVGRIVPDSV 265
+++M Q L D +VL +I+ +++HY ++ + + P Q V +G+I DS
Sbjct: 206 YKSMFQKLPDIREVLTCKIEELGSELKEHYKIEAFTPLLAPA---QEPVTLLGQIGCDS- 261
Query: 266 NAEGPLNVDSLAIETSRSTGIGRRIRLNFEKIQNLSVFPGQIVALKGKNANGEYFVVEDI 325
G LN S+ +E R G +I ++ +++ S+FPGQ+V ++G N G V +
Sbjct: 262 --NGKLNNKSVILEGDREHSSGAQIPVDLSELKEYSLFPGQVVIMEGINTTGRKLVATKL 319
Query: 326 ---LKIPYLNSPVSDSEMLQDSQITLNNQPMKVVVTAGSYTPANNLDFSNLEHFVDRINT 382
+ +P+ D++ Q V+V G YT ++++ + L + IN
Sbjct: 320 YEGVPLPFYQPTEEDADFEQS----------MVLVACGPYTTSDSITYDPLLDLIAVINH 369
Query: 383 SIKPHILIMFGPFLDITHQLISSGNIPDFPNLKQQPKTLDEVFIKVIAPILKRINPK-IQ 441
+P + I+FGPFLD H+ + + + +++F + + I++
Sbjct: 370 D-RPDVCILFGPFLDAKHEQVENCLL---------TSPFEDIFKQCLRTIIEGTRSSGSH 419
Query: 442 VILIPSTKEVTSKHAAYPQDSLDRKYLSL--PKNFKCFTNPSTFQLNEIFFGCSNNDIYK 499
++ +PS ++V YPQ LS K + + P + +N + FG ++ D+
Sbjct: 420 LVFVPSLRDV-HHEPVYPQPPFSYSDLSREDKKQVQFVSEPCSLSINGVIFGLTSTDLLF 478
Query: 500 DLKEVTKGGNVFQRNRFDRVSEHILEQRRYYPVFPGGIRTRKVEGKNGKPVFEHIAGADL 559
L + +RF R+ +HIL QR YYP++P D+
Sbjct: 479 HLGAEEISSSSGTSDRFSRILKHILTQRSYYPLYP--------------------PQEDM 518
Query: 560 DLPYLGLTEFIG-GIIPDVILIPSELTHFARVVQNVIMLNPGSFIRPNGGRGTYIEMSIE 618
+ Y + + PDV++IPSEL +F + V + +NPG + G GT+ + +
Sbjct: 519 AIDYESFYVYAQLPVTPDVLIIPSELRYFVKDVLGCVCVNPGRLTKGQVG-GTFARLYLR 577
Query: 619 AP 620
P
Sbjct: 578 RP 579
>7301561 [L] KOG1625 DNA polymerase alpha-primase complex
polymerase-associated subunit B
Length = 653
Score = 106 bits (265), Expect = 1e-22
Identities = 94/390 (24%), Positives = 173/390 (44%), Gaps = 58/390 (14%)
Query: 249 QQQSEVYTVGRIVPDSVNAEGPLNVDSL---AIETSRSTGIGRRIRLNFEKIQNLSVFPG 305
Q ++ VG I + +GPL+ S ++ + + LNF ++++ S+FPG
Sbjct: 310 QSAGGLHAVGMIHSED---DGPLDAHSAFMAVLDDDVEDEMDPTLTLNFSRVKSASIFPG 366
Query: 306 QIVALKGKNANGEYFVVEDILKIPYLNSPVSDSEMLQDSQITLNNQPMKVVVTAGSYTPA 365
Q+V KG G+ F+VE+I + ++ + LQ ++ ++ VV +G +T +
Sbjct: 367 QVVLAKGFIPRGKTFMVEEI----HTERKLTPATPLQ------IDRELQFVVASGPFTDS 416
Query: 366 NNLDFSNLEHFVDRINTSIKPHILIMFGPFLDITHQLISSGNIPDFPNLKQQPKTLDEVF 425
+L + L + + +P +L++ GPFLD H+++ + +T D F
Sbjct: 417 TDLFYEPLHDLLKYLKDH-RPDVLVLTGPFLDADHKMVG-----------ELAETFDTFF 464
Query: 426 IKVIAPILKRINPKIQVILIPSTKEVTSKHA-AYPQDSLDRKYLSLPKNFKCFTNPSTFQ 484
K+I I++ I V+++ S K+ + P +L R Y N +PS
Sbjct: 465 EKMIGGIMESIGSHTAVLVVTSQKDAMALSVYPTPPPALRRTY----PNLYMLPDPSLVD 520
Query: 485 LNEIFFGCSNNDIYKDLKEVTKGGNVFQRNRFDRVSEHILEQRRYYPVFPGGIRTRKVEG 544
L+ G ++ D+ L N + R R H+ Q +YP++P
Sbjct: 521 LDGFTLGVTSTDVVDHLLSHEFAVNAGE--RMHRAINHLFHQGSFYPLYP---------- 568
Query: 545 KNGKPVFEHIA-GADLDLPYLGLTEFIGGIIPDVILIPSELTHFARVVQNVIMLNPGSFI 603
P E +A + L L Y L + +P+V+++PS+ HF R+V + +++NPG
Sbjct: 569 ----PADEDMAYDSQLALKYAQLKQ-----LPNVLILPSDQRHFIRLVNDCLVINPGRVA 619
Query: 604 RPNGGRGTYIEMSIEAPDMENEKMTKVNDV 633
G GT+ + AP + + N V
Sbjct: 620 DKKG--GTFARFLV-APSVPGKAANMFNSV 646
>ECU10g1080 [L] KOG1625 DNA polymerase alpha-primase complex
polymerase-associated subunit B
Length = 418
Score = 97.1 bits (240), Expect = 8e-20
Identities = 115/424 (27%), Positives = 177/424 (41%), Gaps = 86/424 (20%)
Query: 193 KVKISPFYDPKKYKFRTMRQSLLDTADVLDEQIDIFSEIIQKHYNLKP-SDIGDPTFQQQ 251
K ++S FY KK K+ +R L+ E + I + KP +++ D +F
Sbjct: 26 KPRVSNFYLRKKDKYEYVRHRLISMKPYFLELLGI--------EDFKPVNNVSDSSF--- 74
Query: 252 SEVYTVGRIVPDSVNAEG-PLNVDSLAIETSRSTGIGRRIRLNFEKIQNLSVFPGQIVAL 310
YT G I N G L+ +S+ I +S +RLN +Q SVFPGQIVA+
Sbjct: 75 ---YTYGIIT----NPFGHKLDSESVFIASSIDGSNDVAVRLNLAHLQRYSVFPGQIVAV 127
Query: 311 KGKNANGEYFVVEDILKIPYLNSPVSDSEMLQDSQITLNNQPMKVVVTAGSYTPANNLDF 370
KGKN +G VE + I PV D + +D + QP +V +G Y P D
Sbjct: 128 KGKNTDGGKMTVEALHCI-----PVVDINVAKDGEEKKYMQP-TIVAFSGPYGPGPEFD- 180
Query: 371 SNLEHFVDRINTSIKPHILIMFGPFLDITHQLISSGNIPDFPNLKQQPKT-LDEVFIKVI 429
+DR+ + +LI+ GPF+ P Q P + + EVFI I
Sbjct: 181 -----ALDRV-LAEDADVLILIGPFIG-----------PRQYGATQSPDSMMKEVFIPRI 223
Query: 430 APILKRINPKIQVILIPSTKEVTSKHAAYPQDSLDRKYLSLPKNFKCFTNPSTFQLNEIF 489
L R N + +L+PST ++T + +PQ + + C NP F +NEI
Sbjct: 224 RGWLDR-NAGSKAVLVPSTNDMTCLN-VFPQGPIGVN----DERIVCTGNPCEFFVNEIL 277
Query: 490 FGCSN-------------NDIYKDLKEVTKGGNVFQRNRFDRVSEHILEQRRYYPVFPGG 536
S+ +D + + G +F +R R+S H++ QR + PVFP
Sbjct: 278 VAISSLDTPLEISSEECFHDSGMECSDDACGKLLFGGDRLGRISYHLIFQRTFLPVFP-- 335
Query: 537 IRTRKVEGKNGKPVFEHIAGADLDLPYLGLTEFIGGIIPDVILIPSELTHFARVVQNVIM 596
V + + + PD+ ++ S+L HF R V I+
Sbjct: 336 ----------SMNVVSYSVPESMSM----------DTAPDIYIVASKLKHFCRDVGPSIV 375
Query: 597 LNPG 600
+N G
Sbjct: 376 VNIG 379
>CE28840 [L] KOG1625 DNA polymerase alpha-primase complex
polymerase-associated subunit B
Length = 581
Score = 96.7 bits (239), Expect = 1e-19
Identities = 92/381 (24%), Positives = 170/381 (44%), Gaps = 50/381 (13%)
Query: 242 DIGDPTFQQQSEVYTVGRIVPDSVNAEGPLNVDSLAIETSRSTGIGRRIRLNFEKI-QNL 300
D G+P+ VYT G+++ D S+A+ + G IR++F K+ +++
Sbjct: 222 DWGNPSIPSVDVVYTYGQVIHDETKDNEKFGEHSVALMINDEDGT--MIRMDFSKMTEDI 279
Query: 301 SVFPGQIVALKGKNANGEYFVVEDILKIPYLNSPVSDSEMLQDSQITLNNQPMKVVVTAG 360
++FPGQI+A++G N GE V+ I + L PV+ E + ++ G
Sbjct: 280 TLFPGQIIAVRGTNETGEELQVDKIFQPAAL--PVNPVE---------TDTTKEIWFACG 328
Query: 361 SYTPANNLDFSNLEHFVDRINTSIKPHILIMFGPFLDITHQLISSGNIPDFPNLKQQPKT 420
YT +N + +L +D++ + KP IL++ GPF+D + + N P F N+
Sbjct: 329 PYTATDNCGYEHLCELLDKV-VAEKPDILMLAGPFVDKKNTFL---NKPTF-NITYD-NL 382
Query: 421 LDEVFIKVIAPILKRINPKIQVILIPSTKEVTSKHAAYPQDSL--DRKYLSLPKNFKCFT 478
L+++ +KV + + K QVI+ P+ +P +RK + K
Sbjct: 383 LEDLLLKVKETL---VGTKTQVIIQPNASRDLCVPPVFPSAPFQQNRKLDKIKKELIFVA 439
Query: 479 NPSTFQLNEIFFGCSNNDIYKDLK--EVTKGGNVFQRNRFDRVSEHILEQRRYYPVFPGG 536
+P F+++ + ++++ + L E + N +R R+S H+L Q+ YP+ P
Sbjct: 440 DPCIFRISGVEVAMTSSEPIQALSNTEFHRSANQENIDRVARLSSHLLTQQCMYPLEPTE 499
Query: 537 IRTRKVEGKNGKPVFEHIAGADLDLPYLGLTEFIGGIIPDVILIPSELTHFARVVQNVIM 596
+ G LD+ +G T P ++ P++L A+ V +
Sbjct: 500 VPAS--------------MGDLLDVCCIGST-------PHIVFAPTKLAPSAKCVNGSVF 538
Query: 597 LNPGSFIRPNGGRGTYIEMSI 617
+N + + G G Y +MSI
Sbjct: 539 INSSTLAK--GPTGNYAKMSI 557
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.317 0.136 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,292,223
Number of Sequences: 60738
Number of extensions: 1802453
Number of successful extensions: 4753
Number of sequences better than 1.0e-05: 7
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 4723
Number of HSP's gapped (non-prelim): 9
length of query: 649
length of database: 30,389,216
effective HSP length: 113
effective length of query: 536
effective length of database: 23,525,822
effective search space: 12609840592
effective search space used: 12609840592
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)