ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII3242 normal K KOG2434 Transcription RNA polymerase I transcription factor
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII3242 1112500 1114473 658
(658 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YKL125w [K] KOG2434 RNA polymerase I transcription factor 464 e-130
SPAC18G6.11c [K] KOG2434 RNA polymerase I transcription factor 145 1e-34
HsM8924240 [K] KOG2434 RNA polymerase I transcription factor 114 4e-25
Hs21361631 [K] KOG2434 RNA polymerase I transcription factor 114 4e-25
At1g30590 [K] KOG2434 RNA polymerase I transcription factor 70 8e-12
Hs22067166 [K] KOG2434 RNA polymerase I transcription factor 64 7e-10
Hs21955122 [K] KOG2434 RNA polymerase I transcription factor 64 7e-10
CE00909 [K] KOG2434 RNA polymerase I transcription factor 56 2e-07
>YKL125w [K] KOG2434 RNA polymerase I transcription factor
Length = 627
Score = 464 bits (1194), Expect = e-130
Identities = 222/301 (73%), Positives = 260/301 (85%), Gaps = 6/301 (1%)
Query: 344 EVYYVDLSHNIKELSSKLDDILAVITSKLSCALTPESLEDGDGVTIFNTLTSLFKTHILP 403
E Y V+L+ IKELS+KLD IL ++++ + +TPESLE G+GV +FNTLT+LFKTH+LP
Sbjct: 315 EEYNVELTQGIKELSTKLDSILTLVSTHVEEQVTPESLESGEGVGVFNTLTTLFKTHVLP 374
Query: 404 TYYTRSVQYLMFHVSQQQPELMDAFLVTLIDISFSPNETMEKKIKSLQYIGSFIARAKKL 463
TYYTRS+QY+MFHVSQQQ ELMD+FLVTLIDISF+ NE EKKIKSLQY+GS+IARAKKL
Sbjct: 375 TYYTRSIQYIMFHVSQQQLELMDSFLVTLIDISFAVNEAAEKKIKSLQYLGSYIARAKKL 434
Query: 464 TRTQIVFVTSYLTSWLNRYVLEREEEVDQQGGMERFKHFYAVFQAICYIFCFRHSILRDG 523
+RTQI+FV SYLTSWLNRYV+EREEEVDQ+GGMERFKHFYA FQA+CYIFCFRH+I RD
Sbjct: 435 SRTQIIFVASYLTSWLNRYVIEREEEVDQRGGMERFKHFYAAFQALCYIFCFRHNIFRDT 494
Query: 524 NDAWECDLDKFFQRMVISKFNPLKYCNGNVMMMFAKIAQNEGVVYCFSIIENNNNERLRG 583
+ WEC+LDKFFQRMVISKFNPLK+CN NVM+MFA+IAQ E V YCFSIIENNNNERLRG
Sbjct: 495 DGNWECELDKFFQRMVISKFNPLKFCNENVMLMFARIAQQESVAYCFSIIENNNNERLRG 554
Query: 584 ITGKS------AESGGSSISGTWSLATRQQFIDLQSYFPYDPLFLTNYKSMMKDYYIEWT 637
I GK+ + ++ S +WSLATRQQFIDLQSYFPYDPLFL NYK +MK+YYIEW+
Sbjct: 555 IIGKADSDKKENSAQANTTSSSWSLATRQQFIDLQSYFPYDPLFLKNYKILMKEYYIEWS 614
Query: 638 E 638
E
Sbjct: 615 E 615
Score = 246 bits (627), Expect = 1e-64
Identities = 125/254 (49%), Positives = 177/254 (69%), Gaps = 14/254 (5%)
Query: 1 MMAMENGQKRQCTDLSSAMISGSDKKRRRVEFSETVLDQDGNSVLSGSNTRKDGSGNDKK 60
MMA EN KR D ++ D+K+R+V+FS++ +G T + D+
Sbjct: 1 MMAFENTSKRPPQDF----VAPIDQKKRKVQFSDS----------TGLVTLQPEEIKDEV 46
Query: 61 FALEMFESFVIRALKEIDAGEDSGIESLSMQVSLPASSADRISADNFSLLLRMLGNNITK 120
F+ M+ FV AL ++D + + I ++ QV+LP+ + +RI+ N ++LL +L +NI +
Sbjct: 47 FSAAMYSRFVKSALDDLDKNDSTQIGIIANQVALPSKNPERINDKNLNILLDILSSNINR 106
Query: 121 IDNKRGLTIIRSIINFEKWWELPATTLSSYISFIRILCSSLPKWWQDVSMALISNFQLSM 180
I++ RG +I+SIINFEKWWELP TLS YI FI+ILCSS+PKWWQDVSM L+S F L +
Sbjct: 107 IESSRGTFLIQSIINFEKWWELPPHTLSKYIYFIKILCSSIPKWWQDVSMILVSCFILPI 166
Query: 181 SKTVQHHEMLRYFLKTIPSSVHFIDSYIAKFFPNKNDSKKVLLNFISNVLALTEYCHELR 240
+TV HH+ML+YFL+ IPSS+ FID+Y+AKFFPNKND+++ L+N+ SN+L L YC EL
Sbjct: 167 KQTVCHHDMLKYFLRMIPSSMGFIDTYLAKFFPNKNDTRRKLVNYTSNLLKLRGYCSELG 226
Query: 241 FQAWSLVIEKVISI 254
FQ WSL+IEK+ISI
Sbjct: 227 FQIWSLLIEKIISI 240
>SPAC18G6.11c [K] KOG2434 RNA polymerase I transcription factor
Length = 599
Score = 145 bits (367), Expect = 1e-34
Identities = 89/294 (30%), Positives = 147/294 (49%), Gaps = 37/294 (12%)
Query: 355 KELSSKLDDILAVITSKLSCALTPESLEDGDGVTIFNTLTSLFKTHILPTYYTRSVQYLM 414
++L +LD +L + S L L S D ++N+L F +L T+ R Q+L+
Sbjct: 308 RQLMQQLDQLLYTLFSYLDSNLKSTSR---DRYLVYNSLIKSFVNTVLKTFRCRYTQFLI 364
Query: 415 FHVSQQQPELMDAFLVTLIDISFSPNETMEKKIKSLQYIGSFIARAKKLTRTQIVFVTSY 474
F SQ PE D FL L ++ P++ ++ YIGS++ARAK L + I + +
Sbjct: 365 FWASQLDPEFTDIFLGVLTEVCLDPSQPYTLRLSGAMYIGSYVARAKALEKNTIQIIVNM 424
Query: 475 LTSWLNRYVLEREEEVDQQGGMERFKHFYAVFQAICYIFCFRHSILRDGNDA-------- 526
+T W+ Y+ + E E+ + + FYA+ Q+I YIFCFR L +++
Sbjct: 425 MTRWVEAYLDQCENELSDD-LLSKHSVFYAINQSIFYIFCFRWRELCVSDESESMEPRPN 483
Query: 527 -WECDLDKFFQRMVISKFNPLKYCNGNVMMMFAKIAQNEGVVYCFSIIENNNNERLRGIT 585
W L+ R V+S+ NPL+YC+ N+++ FAK+A + +Y +SIIE N +GI
Sbjct: 484 EWIPGLE-ILHRSVLSRLNPLRYCSPNIVLQFAKVANHLNFMYVYSIIEQNR----KGI- 537
Query: 586 GKSAESGGSSISGTWSLATRQQFIDLQSYFPYDPLFLTNYKSMMKDYYIEWTEV 639
R+ F + +YFP+DP LT +++ +Y EW ++
Sbjct: 538 ------------------FREGFDTMDAYFPFDPYRLTKSSIIVQPFYNEWQQI 573
Score = 74.3 bits (181), Expect = 5e-13
Identities = 53/204 (25%), Positives = 98/204 (47%), Gaps = 6/204 (2%)
Query: 55 SGNDKKFALEMFESFVIRALKEIDAGEDSGIESLSMQVSLPASSADRISADNFSLLLRML 114
S ND + +M +FV +AL + G +G E L Q + + + D S+ LL L
Sbjct: 43 SKNDGRLMQQMLRAFVNKALDDKAEGNFAGYEDLRRQFAAKSDTKDAPSSLQLQNLLSAL 102
Query: 115 GNNITKIDNKRGLTIIRSIINFEKWWELPATTLSSYISFIRILCSSLPKWWQDVSMALIS 174
N++++D+ +++ S+++ W + + Y F+ L S+ + V LI
Sbjct: 103 TCNVSRLDSSNS-SLVMSVLD-SVWVSRDESFVRCYTRFLGNLISAQSNYLPLVMTMLIQ 160
Query: 175 NFQLSMSKTVQHHE----MLRYFLKTIPSSVHFIDSYIAKFFPNKNDSKKVLLNFISNVL 230
+ H+E L+Y L+ +P + F+ S I + FP K++S + +ISNVL
Sbjct: 161 HMLYRPDSLAIHYEHAHMALKYVLELVPRAHSFLYSSILEEFPYKDESLLAQMTYISNVL 220
Query: 231 ALTEYCHELRFQAWSLVIEKVISI 254
++ EY ++ +I+K+I I
Sbjct: 221 SICEYVPSIKGPVLHAIIDKIIQI 244
>HsM8924240 [K] KOG2434 RNA polymerase I transcription factor
Length = 651
Score = 114 bits (286), Expect = 4e-25
Identities = 79/293 (26%), Positives = 141/293 (47%), Gaps = 14/293 (4%)
Query: 350 LSHNIKELSSKLDDILAVITSKLS-CALTPESLEDGDGVTIFNTLTSLFKTHILPTYYTR 408
L + ++ +LD +++++ S + +++G ++ L ++F +LPT+ +
Sbjct: 303 LDQMVHPVAERLDILMSLVLSYMKDVCYVDGKVDNGKTKDLYRDLINIFDKLLLPTHASC 362
Query: 409 SVQYLMFHVSQQQPELMDAFLVTLIDISFSPNETMEKKIKSLQYIGSFIARAKKLTRTQI 468
VQ+ MF++ + +AFL L P+ + + YIGSF+ARAK + +
Sbjct: 363 HVQFFMFYLCSFKLGFAEAFLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLITV 422
Query: 469 VFVTSYLTSWLNRYVLEREEEVDQQGGMERFKHFYAVFQAICYIFCFRHSILRDGN--DA 526
L +WL+ Y+ ++ + FY+ QA+ Y F FRH L GN +
Sbjct: 423 KSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNLKEG 482
Query: 527 WECDLDKFFQRMVISKFNPLKYCNGNVMMMFAKIAQNEGVVYCFSIIENNNNERLRGITG 586
+ F+R+V+S+ NPLK C +V+ FA I +V+C++IIE NN + L I
Sbjct: 483 LQYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNRQMLPVI-- 540
Query: 587 KSAESGGSSISGTWSLATRQQFIDLQSYFPYDPLFLTNYKSMMKDYYIEWTEV 639
+ +GG S+ + T L ++FP+DP L K + Y W ++
Sbjct: 541 -RSTAGGDSV----QICTN----PLDTFFPFDPCVLKRSKKFIDPIYQVWEDM 584
>Hs21361631 [K] KOG2434 RNA polymerase I transcription factor
Length = 651
Score = 114 bits (286), Expect = 4e-25
Identities = 79/293 (26%), Positives = 141/293 (47%), Gaps = 14/293 (4%)
Query: 350 LSHNIKELSSKLDDILAVITSKLS-CALTPESLEDGDGVTIFNTLTSLFKTHILPTYYTR 408
L + ++ +LD +++++ S + +++G ++ L ++F +LPT+ +
Sbjct: 303 LDQMVHPVAERLDILMSLVLSYMKDVCYVDGKVDNGKTKDLYRDLINIFDKLLLPTHASC 362
Query: 409 SVQYLMFHVSQQQPELMDAFLVTLIDISFSPNETMEKKIKSLQYIGSFIARAKKLTRTQI 468
VQ+ MF++ + +AFL L P+ + + YIGSF+ARAK + +
Sbjct: 363 HVQFFMFYLCSFKLGFAEAFLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLITV 422
Query: 469 VFVTSYLTSWLNRYVLEREEEVDQQGGMERFKHFYAVFQAICYIFCFRHSILRDGN--DA 526
L +WL+ Y+ ++ + FY+ QA+ Y F FRH L GN +
Sbjct: 423 KSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFYXFVFRHKQLLSGNLKEG 482
Query: 527 WECDLDKFFQRMVISKFNPLKYCNGNVMMMFAKIAQNEGVVYCFSIIENNNNERLRGITG 586
+ F+R+V+S+ NPLK C +V+ FA I +V+C++IIE NN + L I
Sbjct: 483 LQYLQSLNFERIVMSQLNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNRQMLPVI-- 540
Query: 587 KSAESGGSSISGTWSLATRQQFIDLQSYFPYDPLFLTNYKSMMKDYYIEWTEV 639
+ +GG S+ + T L ++FP+DP L K + Y W ++
Sbjct: 541 -RSTAGGDSV----QICTN----PLDTFFPFDPCVLKRSKKFIDPIYQVWEDM 584
>At1g30590 [K] KOG2434 RNA polymerase I transcription factor
Length = 604
Score = 70.5 bits (171), Expect = 8e-12
Identities = 74/291 (25%), Positives = 120/291 (40%), Gaps = 44/291 (15%)
Query: 357 LSSKLDDILAVITSKLSCALTPESLEDGDGVTIFNTLTSLFKTHILPTYYTRSVQYLMFH 416
+S LD ++ + L + L++ +F L F+ +IL TY T+ Q+LMF+
Sbjct: 275 VSELLDKLMVLFFHHLESCQNSDRLDE-----VFEILFKSFENYILNTYKTKFSQFLMFY 329
Query: 417 VSQQQPELMDA-FLVTLIDISFSPNETMEKKIKSLQYIGSFIARAKKLTRTQIVFVTSYL 475
PE F L+DI S N ++ ++ Y+ S+++R K L S++
Sbjct: 330 ACSLDPENCGVRFASKLLDIYLSSNTCRLTRMSAVAYLASYLSRGKFLP-------ASFV 382
Query: 476 TSWLNRYVLEREE---EVDQQGGMERFKHFYAVFQAICYIFCFR-HSILRDGNDAWECDL 531
S L R V E E + E + FY+ QAI Y+ CFR SI+ +
Sbjct: 383 ASMLKRLVDECAEYCGTCNDDVKPEAHQVFYSGCQAILYVLCFRMRSIVEIPRFQSQF-- 440
Query: 532 DKFFQRMVISKFNPLKYCNGNVMMMFAKIAQNEG---VVYCFSIIENNNNERLRGITGKS 588
+ + ++ K NPL C +V+ F K A+ G V F + + +E R G
Sbjct: 441 -RSLESILSHKLNPLLVCLPSVVSEFLKQAKAGGLFIVSESFIFDDLHESELSRAFGG-- 497
Query: 589 AESGGSSISGTWSLATRQQFIDLQSYFPYDPLFLTNYKSMMKDYYIEWTEV 639
F L ++FP+DP L S + + W+ V
Sbjct: 498 -------------------FERLDTFFPFDPCLLKMSSSYISPNFNFWSMV 529
>Hs22067166 [K] KOG2434 RNA polymerase I transcription factor
Length = 314
Score = 63.9 bits (154), Expect = 7e-10
Identities = 38/113 (33%), Positives = 59/113 (51%), Gaps = 2/113 (1%)
Query: 452 YIGSFIARAKKLTRTQIVFVTSYLTSWLNRYVLEREEEVDQQGGMERFKHFYAVFQAICY 511
YIGSF+ARAK ++ + L +WL+ Y+ ++ + FY+ QA+ Y
Sbjct: 202 YIGSFLARAKFISLITVKPCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFY 261
Query: 512 IFCFRHSILRDGN--DAWECDLDKFFQRMVISKFNPLKYCNGNVMMMFAKIAQ 562
F FRH L GN + + F+R+V+S+ NPLK C +V+ FA I +
Sbjct: 262 TFVFRHKQLLSGNLKEGLQYPQSLNFERIVMSQLNPLKICLPSVVNFFAAITK 314
>Hs21955122 [K] KOG2434 RNA polymerase I transcription factor
Length = 152
Score = 63.9 bits (154), Expect = 7e-10
Identities = 38/113 (33%), Positives = 59/113 (51%), Gaps = 2/113 (1%)
Query: 452 YIGSFIARAKKLTRTQIVFVTSYLTSWLNRYVLEREEEVDQQGGMERFKHFYAVFQAICY 511
YIGSF+ARAK ++ + L +WL+ Y+ ++ + FY+ QA+ Y
Sbjct: 31 YIGSFLARAKFISLITVKPCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPFYSACQAVFY 90
Query: 512 IFCFRHSILRDGN--DAWECDLDKFFQRMVISKFNPLKYCNGNVMMMFAKIAQ 562
F FRH L GN + + F+R+V+S+ NPLK C +V+ FA I +
Sbjct: 91 TFVFRHKQLLSGNLKEGLQYPQSLNFERIVMSQLNPLKICLPSVVNFFAAITK 143
>CE00909 [K] KOG2434 RNA polymerase I transcription factor
Length = 654
Score = 55.8 bits (133), Expect = 2e-07
Identities = 47/190 (24%), Positives = 87/190 (45%), Gaps = 6/190 (3%)
Query: 389 IFNTLTSLFKTHILPTYYTRSVQYLMFH---VSQQ-QPELMDAFLVTLIDISFSPNETME 444
+F+T ++ +L + + V ++ + +SQ+ + ++++ I + +P +
Sbjct: 352 LFDTFLECLESTMLNATHVQYVSFIWLYFCSLSQEYEKKMLEHLWQVTIRMPRAPADA-R 410
Query: 445 KKIKSLQYIGSFIARAKKLTRTQIVFVTSYLTSWLNRYVLEREEEVDQ-QGGMERFKHFY 503
K + Y+ +F+ARAK + ++ + WL YV + Q G++R FY
Sbjct: 411 KSQGAASYLAAFLARAKYVKKSTAFTWLEEVYIWLRHYVDQFGSGSSQILPGLQRHGTFY 470
Query: 504 AVFQAICYIFCFRHSILRDGNDAWECDLDKFFQRMVISKFNPLKYCNGNVMMMFAKIAQN 563
+V QA +F FR+ D E R+V S PLKY + V F+ I ++
Sbjct: 471 SVSQAFFLVFAFRYKEFVKNKDMLETIRRWGVGRVVHSPLEPLKYVSKPVARCFSAITRS 530
Query: 564 EGVVYCFSII 573
+VYC II
Sbjct: 531 LQLVYCNHII 540
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.321 0.135 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,383,902
Number of Sequences: 60738
Number of extensions: 1293627
Number of successful extensions: 3569
Number of sequences better than 1.0e-05: 8
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3542
Number of HSP's gapped (non-prelim): 13
length of query: 658
length of database: 30,389,216
effective HSP length: 113
effective length of query: 545
effective length of database: 23,525,822
effective search space: 12821572990
effective search space used: 12821572990
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)