ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII3324 good K KOG1946 Transcription RNA polymerase I transcription factor UAF
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII3324 Some similarity with YMR233w SP|Q05024
{P2.91.f2.1}
(196 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YMR233w [K] KOG1946 RNA polymerase I transcription factor UAF 172 3e-43
SPCC285.17 [K] KOG1946 RNA polymerase I transcription factor UAF 95 7e-20
YOR295w [K] KOG1946 RNA polymerase I transcription factor UAF 92 6e-19
At3g19080 [K] KOG1946 RNA polymerase I transcription factor UAF 82 4e-16
At1g49520 [K] KOG1946 RNA polymerase I transcription factor UAF 81 1e-15
At4g22360 [K] KOG1946 RNA polymerase I transcription factor UAF 75 4e-14
At3g03590 [K] KOG1946 RNA polymerase I transcription factor UAF 74 1e-13
At2g14880 [K] KOG1946 RNA polymerase I transcription factor UAF 72 6e-13
At4g34290 [K] KOG1946 RNA polymerase I transcription factor UAF 69 4e-12
CE00769 [K] KOG1946 RNA polymerase I transcription factor UAF 60 1e-09
At1g31760 [K] KOG1946 RNA polymerase I transcription factor UAF 60 2e-09
At3g01890 [BK] KOG2570 SWI/SNF transcription activation complex ... 55 8e-08
At5g14170 [BK] KOG2570 SWI/SNF transcription activation complex ... 54 1e-07
7292276 [K] KOG1946 RNA polymerase I transcription factor UAF 52 5e-07
Hs21264348 [BK] KOG2570 SWI/SNF transcription activation complex... 49 3e-06
Hs20070148 [BK] KOG2570 SWI/SNF transcription activation complex... 49 3e-06
CE08311 [BK] KOG2570 SWI/SNF transcription activation complex su... 48 7e-06
SPAC23G3.10c [BK] KOG2570 SWI/SNF transcription activation compl... 45 6e-05
At4g26810 [K] KOG1946 RNA polymerase I transcription factor UAF 45 6e-05
CE01687 [BK] KOG2570 SWI/SNF transcription activation complex su... 44 2e-04
7292842 [BK] KOG2570 SWI/SNF transcription activation complex su... 43 2e-04
At3g48600 [K] KOG1946 RNA polymerase I transcription factor UAF 42 4e-04
At2g16480 [K] KOG1946 RNA polymerase I transcription factor UAF 40 0.002
At3g51120_2 [K] KOG1946 RNA polymerase I transcription factor UAF 39 0.003
HsM4507085 [BK] KOG2570 SWI/SNF transcription activation complex... 37 0.017
Hs21264351 [BK] KOG2570 SWI/SNF transcription activation complex... 37 0.017
At2g18090_2 [K] KOG1946 RNA polymerase I transcription factor UAF 37 0.022
HsM4507087 [BK] KOG2570 SWI/SNF transcription activation complex... 35 0.050
Hs21264353 [BK] KOG2570 SWI/SNF transcription activation complex... 35 0.050
CE02790 [T] KOG0976 Rho/Rac1-interacting serine/threonine kinase... 32 0.42
At5g08430_1 [K] KOG1946 RNA polymerase I transcription factor UAF 32 0.55
ECU02g1060 [O] KOG0529 Protein geranylgeranyltransferase type II... 31 0.94
At5g50020 [R] KOG1311 DHHC-type Zn-finger proteins 31 0.94
CE09599 [JK] KOG2038 CAATT-binding transcription factor/60S ribo... 30 2.7
7298194 [K] KOG0871 Class 2 transcription repressor NC2 beta sub... 30 2.7
At5g63700_2 [K] KOG1946 RNA polymerase I transcription factor UAF 29 3.6
Hs7661904 [S] KOG1910 Uncharacterized conserved protein 29 4.7
Hs4758460 [R] KOG0619 FOG: Leucine rich repeat 28 6.1
Hs22052726 [T] KOG3519 Invasion-inducing protein TIAM1/CDC24 and... 28 6.1
Hs22053198 [B] KOG4715 SWI/SNF-related matrix-associated actin-d... 28 8.0
Hs20561496 [R] KOG1648 Uncharacterized conserved protein contain... 28 8.0
7300529 [R] KOG0255 Synaptic vesicle transporter SVOP and relate... 28 8.0
7296950 [Z] KOG0516 Dystonin GAS (Growth-arrest-specific protein... 28 8.0
At5g23480_1 [K] KOG1946 RNA polymerase I transcription factor UAF 28 8.0
>YMR233w [K] KOG1946 RNA polymerase I transcription factor UAF
Length = 226
Score = 172 bits (436), Expect = 3e-43
Identities = 90/191 (47%), Positives = 129/191 (67%), Gaps = 6/191 (3%)
Query: 1 MSNPEEVSAKRIRKALQELFSVDLNSHKHDLKELIISRFNRLQDLQSKTLKHEELVDLDS 60
+SNP+E+S KR+RKALQ L+SV+L+S + + ELI+ RF +Q+ + +L+ D
Sbjct: 17 VSNPDEISPKRVRKALQILYSVNLDSQRKLINELILERFGDIQENPRVLIPKNDLISRDQ 76
Query: 61 KLAVKLHDDEVAMLXXXXXXXXXXXXXXXXXXXVANDNP--NSIHLKKVGLSPELQEFLK 118
+L+++L +E L ND+P NSI ++KV LS LQ+FL
Sbjct: 77 ELSLRLQKEEERPLRSTRKRKGKSESKSKRKKK-KNDSPDSNSISVRKVLLSAPLQKFLG 135
Query: 119 VEEMPRTQVVKSVWDYIKEHDLQNPEDRREIICDDAMKPIFGEKMTMFTLNKILSKHLFN 178
EE+PRTQVVK +W YIKEHDLQNP+DRREI+CD+ M+PIFG+KMTMF++NK+L+KHLFN
Sbjct: 136 SEELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIFGKKMTMFSMNKLLTKHLFN 195
Query: 179 ---LAKSEKDE 186
+ K E+++
Sbjct: 196 PDEIVKHEEEQ 206
>SPCC285.17 [K] KOG1946 RNA polymerase I transcription factor UAF
Length = 233
Score = 94.7 bits (234), Expect = 7e-20
Identities = 58/171 (33%), Positives = 89/171 (51%), Gaps = 2/171 (1%)
Query: 5 EEVSAKRIRKALQELFSVDLNSHKHDLKELIISRFNRLQDLQSKTLKHEELVDLDSKLAV 64
+ VSAK++R+ L+E VDL++HK DL LI+ F+ K ++ +K
Sbjct: 18 QTVSAKQVRQLLEERRKVDLSAHKKDLNALILKCFDETAAPSEKESLEKQAPARKTKGKR 77
Query: 65 KLHDDEVAMLXXXXXXXXXXXXXXXXXXXVANDNPNSIHLKK-VGLSPELQEFLKVEEMP 123
+ N +P + L K + LSP+L EFL +E++
Sbjct: 78 ATENGTEEGKKPAKRTRKRKEDGEEGGKRKRNQDPANNPLNKPMKLSPKLAEFLGLEQLS 137
Query: 124 RTQVVKSVWDYIKEHDLQNPEDRREIICDDAMKPIFG-EKMTMFTLNKILS 173
R Q VK +W+YIK HDLQ+P D+R I+CDD +K +F + + MFT+NK L+
Sbjct: 138 RPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSVFEVDTLHMFTMNKYLT 188
>YOR295w [K] KOG1946 RNA polymerase I transcription factor UAF
Length = 228
Score = 91.7 bits (226), Expect = 6e-19
Identities = 50/173 (28%), Positives = 93/173 (52%), Gaps = 1/173 (0%)
Query: 5 EEVSAKRIRKALQELFSVDLNSHKHDLKELIISRFNRLQDLQSKTLKHEELVDLDSKLAV 64
E V+ K++R AL+E++++D+ S + +LI + +++ E+L+ ++ LA+
Sbjct: 21 ETVTTKKVRMALKEVYAIDVESQGKAINKLIRKHLDLVKERPRFERSLEDLLKENATLAI 80
Query: 65 KLHDD-EVAMLXXXXXXXXXXXXXXXXXXXVANDNPNSIHLKKVGLSPELQEFLKVEEMP 123
+L + V+ + + I +KV LS L L E+
Sbjct: 81 ELTKEITVSKRSSGEEKNDSETKGTHVEKKKGTVSKSPISTRKVTLSKSLASLLGEHELT 140
Query: 124 RTQVVKSVWDYIKEHDLQNPEDRREIICDDAMKPIFGEKMTMFTLNKILSKHL 176
RT+VV+ +W YIK H+LQNP +++EI+CD+ ++ I G+ MF ++KIL+ H+
Sbjct: 141 RTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLELILGKSTNMFEMHKILASHM 193
>At3g19080 [K] KOG1946 RNA polymerase I transcription factor UAF
Length = 462
Score = 82.4 bits (202), Expect = 4e-16
Identities = 39/87 (44%), Positives = 60/87 (68%), Gaps = 1/87 (1%)
Query: 105 KKVGLSPELQEFLKVEEMPRTQVVKSVWDYIKEHDLQNPEDRREIICDDAMKPIFG-EKM 163
K LSPELQ F V E+ RT+VVK +W YIKE++LQ+P D+R IICD++ + +F E +
Sbjct: 266 KVCSLSPELQAFTGVTELARTEVVKLLWKYIKENNLQDPNDKRSIICDESFRSLFPVESI 325
Query: 164 TMFTLNKILSKHLFNLAKSEKDEITEQ 190
MF +NK L+KH++ L + + ++ +
Sbjct: 326 NMFQMNKQLTKHIWPLEDNAGESVSSK 352
Score = 76.6 bits (187), Expect = 2e-14
Identities = 35/88 (39%), Positives = 61/88 (68%), Gaps = 3/88 (3%)
Query: 109 LSPELQEFLKVEEMPRTQVVKSVWDYIKEHDLQNPEDRREIICDDAMKPIFGEK-MTMFT 167
LSP+L++ + ++ RT+VVK +W YI+E DLQ+P+DRR+I+CD+ + +F K + MF
Sbjct: 122 LSPQLEKVVGASQLGRTEVVKKMWAYIREKDLQDPKDRRKIVCDELLHSLFRVKTINMFQ 181
Query: 168 LNKILSKHLFNLAKSE--KDEITEQHSD 193
+NK L+KH++ L + +++ E+ D
Sbjct: 182 MNKALTKHIWPLGDGDGCANDVKEEDED 209
Score = 53.5 bits (127), Expect = 2e-07
Identities = 28/75 (37%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 104 LKKVGLSPELQEFLKVEE--MPRTQVVKSVWDYIKEHDLQNPEDRREIICDDAMKPIFG- 160
L + LS L +FL E + R VVK +W+YI +DLQ+P D+R +ICD+ +K +F
Sbjct: 382 LAPLPLSDALVKFLGDGENSLSRADVVKRLWEYINHNDLQDPSDKRRVICDEKLKELFEV 441
Query: 161 EKMTMFTLNKILSKH 175
+ +++K+L+ H
Sbjct: 442 DSFEDTSVSKLLTNH 456
>At1g49520 [K] KOG1946 RNA polymerase I transcription factor UAF
Length = 381
Score = 80.9 bits (198), Expect = 1e-15
Identities = 37/81 (45%), Positives = 58/81 (70%), Gaps = 1/81 (1%)
Query: 105 KKVGLSPELQEFLKVEEMPRTQVVKSVWDYIKEHDLQNPEDRREIICDDAMKPIFG-EKM 163
K LSPELQ F ++ RT+VVK +W YIKE++LQ+P D+R IICD++++ +F E +
Sbjct: 253 KVCSLSPELQAFTGTPQLARTEVVKMLWKYIKENNLQDPSDKRTIICDESLRSLFPVESI 312
Query: 164 TMFTLNKILSKHLFNLAKSEK 184
MF +NK L+KH++ L + ++
Sbjct: 313 NMFQMNKQLAKHIWPLVQEDE 333
Score = 80.5 bits (197), Expect = 1e-15
Identities = 58/190 (30%), Positives = 96/190 (50%), Gaps = 40/190 (21%)
Query: 2 SNPEEVSAKRIRKALQELFSVDLNSHKHDLKELIISRFNRLQDLQSKTLKHEELVDLDSK 61
S+ E + +R+ L+ F V+L K ++E I + L+SK + EE + D
Sbjct: 18 SDLETTTPASVRRQLEVYFGVELTDKKAFVREQIDAFLESDALLESKPEQEEEDCNGDQ- 76
Query: 62 LAVKLHDDEVAMLXXXXXXXXXXXXXXXXXXXVANDNPNS---IHLKKVG--------LS 110
+D+E + ND+ + + KK G LS
Sbjct: 77 -----NDEEGS----------------------ENDDDKTELPVKAKKRGGGFNKICQLS 109
Query: 111 PELQEFLKVEEMPRTQVVKSVWDYIKEHDLQNPEDRREIICDDAMKPIFGEK-MTMFTLN 169
P+L++FL ++ RT+VVK +W YI+EHDLQ+P +RR I+CD+++ +F K + MF +N
Sbjct: 110 PQLEKFLGTSQLARTEVVKKMWAYIREHDLQDPTNRRNILCDESLHSLFRVKTINMFQMN 169
Query: 170 KILSKHLFNL 179
K L+KH++ L
Sbjct: 170 KALAKHIWAL 179
>At4g22360 [K] KOG1946 RNA polymerase I transcription factor UAF
Length = 369
Score = 75.5 bits (184), Expect = 4e-14
Identities = 37/97 (38%), Positives = 62/97 (63%), Gaps = 9/97 (9%)
Query: 109 LSPELQEFLKVEEMPRTQVVKSVWDYIKEHDLQNPEDRREIICDDAMKPIFGEKMT-MFT 167
+SPEL+ + +PRT++V+ +W YI++++LQ+P ++R+IICDDA++ +F T MF
Sbjct: 203 VSPELEVVVGEPALPRTEIVRQLWAYIRKNNLQDPSNKRKIICDDALRVVFETDCTDMFK 262
Query: 168 LNKILSKHLFNL--------AKSEKDEITEQHSDLEP 196
+NK+L+KH+ L AK K E+ + EP
Sbjct: 263 MNKLLAKHILPLDPSKDSGQAKKAKTEVETKTETTEP 299
>At3g03590 [K] KOG1946 RNA polymerase I transcription factor UAF
Length = 143
Score = 74.3 bits (181), Expect = 1e-13
Identities = 39/89 (43%), Positives = 52/89 (57%), Gaps = 3/89 (3%)
Query: 95 ANDNPNSIHLKKVG-LSPELQEFLKVEEMPRTQVVKSVWDYIKEHDLQNPEDRREIICDD 153
A P S + KV +SP L +FL E RT +K +W YIK HDLQNP D+REI CD+
Sbjct: 55 AKKTPRSTGIFKVTPVSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKREIFCDE 114
Query: 154 AMKPIF--GEKMTMFTLNKILSKHLFNLA 180
+K IF +K+ ++K+LS H A
Sbjct: 115 TLKLIFEGKDKVGFLEISKLLSPHFVKTA 143
>At2g14880 [K] KOG1946 RNA polymerase I transcription factor UAF
Length = 141
Score = 71.6 bits (174), Expect = 6e-13
Identities = 30/74 (40%), Positives = 53/74 (71%), Gaps = 2/74 (2%)
Query: 104 LKKVGLSPELQEFLKVEEMPRTQVVKSVWDYIKEHDLQNPEDRREIICDDAMKPIF--GE 161
+K +SPE+Q+ +++ E+ RTQ +K +W YIKEHDLQ+P+++REI+CD+ +K IF +
Sbjct: 66 MKPRPVSPEMQDIVELPEIARTQALKRIWAYIKEHDLQDPQNKREILCDEKLKKIFEGRD 125
Query: 162 KMTMFTLNKILSKH 175
++ + K++ H
Sbjct: 126 RVGFLEIAKLIGPH 139
>At4g34290 [K] KOG1946 RNA polymerase I transcription factor UAF
Length = 144
Score = 68.9 bits (167), Expect = 4e-12
Identities = 30/74 (40%), Positives = 51/74 (68%), Gaps = 2/74 (2%)
Query: 104 LKKVGLSPELQEFLKVEEMPRTQVVKSVWDYIKEHDLQNPEDRREIICDDAMKPIF--GE 161
+K +S +Q+ + V E+PRTQ +K +W YIKEHDLQ+P+++R+I+CD+ +K IF E
Sbjct: 69 MKPRPVSQAMQDVVGVPEIPRTQALKRIWAYIKEHDLQDPQNKRDILCDEKLKKIFEGKE 128
Query: 162 KMTMFTLNKILSKH 175
++ + K++ H
Sbjct: 129 RVGFLEIAKLIGPH 142
>CE00769 [K] KOG1946 RNA polymerase I transcription factor UAF
Length = 415
Score = 60.5 bits (145), Expect = 1e-09
Identities = 29/88 (32%), Positives = 56/88 (62%), Gaps = 1/88 (1%)
Query: 109 LSPELQEFLKVEEMPRTQVVKSVWDYIKEHDLQNPEDRREIICDDAMKPIFGE-KMTMFT 167
+S ELQ+ K + M R VVK++WDYIKE++L++P++ + IICD ++ IF + ++ F
Sbjct: 270 ISTELQQVTKDQWMKRCDVVKALWDYIKENNLKDPKNGQYIICDSTLESIFKKNRLKGFG 329
Query: 168 LNKILSKHLFNLAKSEKDEITEQHSDLE 195
+ K L++H+ + + E ++++
Sbjct: 330 MVKFLTRHIIGTSDMAPEMREEAEAEMD 357
>At1g31760 [K] KOG1946 RNA polymerase I transcription factor UAF
Length = 112
Score = 59.7 bits (143), Expect = 2e-09
Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 109 LSPELQEFLKVEEMPRTQVVKSVWDYIKEHDLQNPEDRREIICDDAMKPIFG--EKMTMF 166
+S +L F E+ R +K VW+Y+K H+LQNP +++EI CDD +K IF +K+ +
Sbjct: 39 VSQQLASFAGERELTRGSALKKVWEYVKLHNLQNPANKKEIHCDDKLKTIFDGKDKVGIT 98
Query: 167 TLNKILSKH 175
+ K+LS H
Sbjct: 99 EIMKLLSPH 107
>At3g01890 [BK] KOG2570 SWI/SNF transcription activation complex subunit
Length = 442
Score = 54.7 bits (130), Expect = 8e-08
Identities = 27/73 (36%), Positives = 42/73 (56%), Gaps = 1/73 (1%)
Query: 105 KKVGLSPELQEFLKVEEMPRTQVVKSVWDYIKEHDLQNPEDRREIICDDAMKPIFGEKMT 164
+K SP L + L +E R +++ ++W Y+K LQNP D CD A+ +FGE+
Sbjct: 248 EKFKTSPALMQVLGIEVDTRPRIIAAIWHYVKVRKLQNPNDPSFFNCDAALHSVFGEEKM 307
Query: 165 MFT-LNKILSKHL 176
FT L+ +S+HL
Sbjct: 308 KFTMLSHKISQHL 320
>At5g14170 [BK] KOG2570 SWI/SNF transcription activation complex subunit
Length = 534
Score = 54.3 bits (129), Expect = 1e-07
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 105 KKVGLSPELQEFLKVEEMPRTQVVKSVWDYIKEHDLQNPEDRREIICDDAMKPIFGEKMT 164
+K LS L + L +E R +++ ++W Y+K LQNP D CD A++ +FGE+
Sbjct: 317 EKFKLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFGEEKL 376
Query: 165 MFTL-NKILSKHL 176
FT+ ++ +S HL
Sbjct: 377 KFTMVSQKISHHL 389
>7292276 [K] KOG1946 RNA polymerase I transcription factor UAF
Length = 244
Score = 52.0 bits (123), Expect = 5e-07
Identities = 28/71 (39%), Positives = 40/71 (55%), Gaps = 1/71 (1%)
Query: 109 LSPELQEFLKVEEMPRTQVVKSVWDYIKEHDLQNPEDRREIICDD-AMKPIFGEKMTMFT 167
LSPEL + +PR +VVK VW IKE DL +P++++ ICDD MK + + F
Sbjct: 174 LSPELSALMGESSLPRHEVVKKVWAIIKERDLYDPKNKQFAICDDELMKVMKIRRFRTFG 233
Query: 168 LNKILSKHLFN 178
+ K L H +
Sbjct: 234 MLKHLKPHFLD 244
>Hs21264348 [BK] KOG2570 SWI/SNF transcription activation complex subunit
Length = 435
Score = 49.3 bits (116), Expect = 3e-06
Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 109 LSPELQEFLKVEEMPRTQVVKSVWDYIKEHDLQNPEDRREIICDDAMKPIFGEKMTMFT 167
L P L L + R +++++W YIK H LQ+P +R +ICD ++ IF + F+
Sbjct: 258 LDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFS 316
>Hs20070148 [BK] KOG2570 SWI/SNF transcription activation complex subunit
Length = 476
Score = 49.3 bits (116), Expect = 3e-06
Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 109 LSPELQEFLKVEEMPRTQVVKSVWDYIKEHDLQNPEDRREIICDDAMKPIFGEKMTMFT 167
L P L L + R +++++W YIK H LQ+P +R +ICD ++ IF + F+
Sbjct: 258 LDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFS 316
>CE08311 [BK] KOG2570 SWI/SNF transcription activation complex subunit
Length = 525
Score = 48.1 bits (113), Expect = 7e-06
Identities = 22/64 (34%), Positives = 34/64 (52%)
Query: 103 HLKKVGLSPELQEFLKVEEMPRTQVVKSVWDYIKEHDLQNPEDRREIICDDAMKPIFGEK 162
H K L P L + L + R ++++++W YIK H LQ+P++R I CD + FG
Sbjct: 300 HPAKFKLHPRLAKVLGIATETRPKIIEALWQYIKTHGLQDPQERDIINCDTFLSQCFGVN 359
Query: 163 MTMF 166
F
Sbjct: 360 RMRF 363
>SPAC23G3.10c [BK] KOG2570 SWI/SNF transcription activation complex subunit
Length = 425
Score = 45.1 bits (105), Expect = 6e-05
Identities = 21/57 (36%), Positives = 32/57 (55%)
Query: 103 HLKKVGLSPELQEFLKVEEMPRTQVVKSVWDYIKEHDLQNPEDRREIICDDAMKPIF 159
H ++ LS L + E R +V +W YIK H LQ+ E++R I CD A++ +F
Sbjct: 202 HPERYKLSKAFANILGIREGTRPDIVSYLWQYIKFHRLQDMEEKRLINCDKALRDLF 258
>At4g26810 [K] KOG1946 RNA polymerase I transcription factor UAF
Length = 106
Score = 45.1 bits (105), Expect = 6e-05
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Query: 97 DNPNSIH--LKKVGLSPELQEFLKVEEMPRTQVVKSVWDYIKEHDLQNPEDRREIICDDA 154
DNP + + V L L+ F+ ++ R VW YIK ++LQ+P+++ +ICD+
Sbjct: 12 DNPKKLGNLIDLVNLPSTLRNFVGQSQISRLGCFMRVWSYIKTNNLQDPKNKNVVICDEK 71
Query: 155 MKPIF--GEKMTMFTLNKILSKHLFNLAKSEKDEI 187
+K I +++ + L ++ H K +I
Sbjct: 72 LKSILLGKQRVELVDLPSLIKLHFPKEQKKNSQKI 106
>CE01687 [BK] KOG2570 SWI/SNF transcription activation complex subunit
Length = 446
Score = 43.5 bits (101), Expect = 2e-04
Identities = 21/61 (34%), Positives = 33/61 (53%)
Query: 106 KVGLSPELQEFLKVEEMPRTQVVKSVWDYIKEHDLQNPEDRREIICDDAMKPIFGEKMTM 165
K L P L + L + R ++++++W YIK H LQ+P+DR I D ++ FG
Sbjct: 224 KFKLHPRLAKVLGIAAETRPRIIEALWQYIKTHKLQDPQDRDTINNDLFLEQCFGVSKMR 283
Query: 166 F 166
F
Sbjct: 284 F 284
>7292842 [BK] KOG2570 SWI/SNF transcription activation complex subunit
Length = 515
Score = 43.1 bits (100), Expect = 2e-04
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 109 LSPELQEFLKVEEMPRTQVVKSVWDYIKEHDLQNPEDRREIICDDAMKPIF 159
L P L L V R ++ ++W YIK H LQ+ +R I CD ++ IF
Sbjct: 298 LDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREYINCDKYLEQIF 348
>At3g48600 [K] KOG1946 RNA polymerase I transcription factor UAF
Length = 205
Score = 42.4 bits (98), Expect = 4e-04
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 97 DNPNSIHLKKVGLSPELQEFLKVEEMPRTQVVKSVWDYIKEHDLQNPEDRREIICDDAMK 156
D IH K +S L F+ E+ + ++ V Y +H+L NPE+ EI+CDD +K
Sbjct: 30 DRRGGIH-KIFPVSESLARFVGQSEVSFSTAMEKVEQYTDDHNLWNPENIEEILCDDNLK 88
Query: 157 PIF 159
IF
Sbjct: 89 TIF 91
>At2g16480 [K] KOG1946 RNA polymerase I transcription factor UAF
Length = 383
Score = 40.0 bits (92), Expect = 0.002
Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 122 MPRTQVVKSVWDYIKEHDLQNPEDRREIICDDAMKPIFGEK-MTMFTLNKILSKHLFNLA 180
+P +V + YIK ++L++P + ++ICD ++ +FG+ + F + +L H
Sbjct: 165 LPMLEVQTLLLAYIKRYNLRDPRRKSQVICDSRLQNLFGKSHVGHFEMLNLLDSHFLKKE 224
Query: 181 KSEKDEITEQHSDLE 195
+++ D+I D E
Sbjct: 225 QNQADDIQGDIVDTE 239
>At3g51120_2 [K] KOG1946 RNA polymerase I transcription factor UAF
Length = 425
Score = 39.3 bits (90), Expect = 0.003
Identities = 25/90 (27%), Positives = 48/90 (52%), Gaps = 11/90 (12%)
Query: 98 NPNSIHLKKVG----LSPELQEFLKVEEMPRTQVVKS------VWDYIKEHDLQNPEDRR 147
NP++I K G + EL EF+ + T V+ + DYIK+ +L++P +
Sbjct: 131 NPSNILKKAPGDTSWATKELLEFVSFMKNGDTSVLSQFDVQGLLLDYIKKKNLRDPLQKS 190
Query: 148 EIICDDAMKPIFG-EKMTMFTLNKILSKHL 176
+++CD + +FG +++ F + K+L H+
Sbjct: 191 QVLCDQMLVKLFGKQRVGHFEMLKLLESHV 220
>HsM4507085 [BK] KOG2570 SWI/SNF transcription activation complex subunit
Length = 475
Score = 37.0 bits (84), Expect = 0.017
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 109 LSPELQEFLKVEEMPRTQVVKSVWDYIKEHDLQNPEDRREIICDDAMKPIF 159
L P L L V R +++++W YIK + LQ+ +R I C+ + IF
Sbjct: 257 LDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIF 307
>Hs21264351 [BK] KOG2570 SWI/SNF transcription activation complex subunit
Length = 475
Score = 37.0 bits (84), Expect = 0.017
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 109 LSPELQEFLKVEEMPRTQVVKSVWDYIKEHDLQNPEDRREIICDDAMKPIF 159
L P L L V R +++++W YIK + LQ+ +R I C+ + IF
Sbjct: 257 LDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIF 307
>At2g18090_2 [K] KOG1946 RNA polymerase I transcription factor UAF
Length = 280
Score = 36.6 bits (83), Expect = 0.022
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 119 VEEMPRTQVVKSVWDYIKEHDLQNPEDRREIICDDAMKPIFG-EKMTMFTLNKILSKHLF 177
+ + + V V +Y++ ++LQN EI+CD + +FG E++ + K+L H
Sbjct: 162 ISVLSKYDVQTLVLEYVRRNNLQNSPQNSEIMCDSKLMRLFGKERVDNLEMLKLLDSHFI 221
Query: 178 NLAKS 182
+ +S
Sbjct: 222 DQVRS 226
>HsM4507087 [BK] KOG2570 SWI/SNF transcription activation complex subunit
Length = 469
Score = 35.4 bits (80), Expect = 0.050
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 109 LSPELQEFLKVEEMPRTQVVKSVWDYIKEHDLQNPEDRREIICDDAMKPIF 159
L P L L + R+ +V+++W Y+K + LQ+ D+ I D + IF
Sbjct: 251 LDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIF 301
>Hs21264353 [BK] KOG2570 SWI/SNF transcription activation complex subunit
Length = 470
Score = 35.4 bits (80), Expect = 0.050
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 109 LSPELQEFLKVEEMPRTQVVKSVWDYIKEHDLQNPEDRREIICDDAMKPIF 159
L P L L + R+ +V+++W Y+K + LQ+ D+ I D + IF
Sbjct: 252 LDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIF 302
>CE02790 [T] KOG0976 Rho/Rac1-interacting serine/threonine kinase Citron
Length = 1286
Score = 32.3 bits (72), Expect = 0.42
Identities = 25/68 (36%), Positives = 41/68 (59%), Gaps = 12/68 (17%)
Query: 2 SNPEEVSAKRI--RKAL---QELFS-----VDLNSHKH-DLKELIISRFNRLQDLQS-KT 49
+ P+ V++K+ R+AL Q+ +S +DLN+ H DLK+ ++ N +QDL+S +
Sbjct: 7 TTPQSVTSKKTPRRRALSPKQKPYSSPFQVIDLNNESHEDLKKRVLDAENIIQDLRSERD 66
Query: 50 LKHEELVD 57
HE LVD
Sbjct: 67 ALHETLVD 74
>At5g08430_1 [K] KOG1946 RNA polymerase I transcription factor UAF
Length = 261
Score = 32.0 bits (71), Expect = 0.55
Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 120 EEMPRTQVVKSVWDYIKEHDLQNPEDRREIICDDAMKPIFGEKMTMFTLN--KILSKH 175
E + R V ++ YI + L +P ++++++CD + +FG + T+F + +L KH
Sbjct: 50 EMISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLFGTR-TIFRMKVYDLLEKH 106
>ECU02g1060 [O] KOG0529 Protein geranylgeranyltransferase type II alpha subunit
Length = 379
Score = 31.2 bits (69), Expect = 0.94
Identities = 29/104 (27%), Positives = 46/104 (43%), Gaps = 25/104 (24%)
Query: 113 LQEFLKVEEMPRT-----QVVKSV------WDYIKEHDLQNPED--RREIICDDAMK--- 156
L+E LK+ +P + +V+ V W+ +KEH L NP D + IC++A++
Sbjct: 79 LEELLKLRSLPESIEKHMAIVQMVADDYFSWNKLKEHLLSNPSDFGTQLRICENALRGNP 138
Query: 157 ----PIFGEKMTMFTLNKILSKHLFNLAKSEKDEITEQHSDLEP 196
P K M K KHL +D +T+ D +P
Sbjct: 139 KSYQPWHHRKFMMERFQKQREKHL-----GREDFLTKLLLDSDP 177
>At5g50020 [R] KOG1311 DHHC-type Zn-finger proteins
Length = 414
Score = 31.2 bits (69), Expect = 0.94
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 112 ELQEFLKVEEMPRTQVVKSVWDYIKEHDLQNPEDRREIICDD 153
+ + F+K EE PR + + W+ +E D +N E+RR+ + DD
Sbjct: 292 DFRAFIK-EEPPRNITLATTWERPEEADEENREERRQKVEDD 332
>CE09599 [JK] KOG2038 CAATT-binding transcription factor/60S ribosomal
subunit biogenesis protein
Length = 953
Score = 29.6 bits (65), Expect = 2.7
Identities = 21/69 (30%), Positives = 38/69 (54%), Gaps = 4/69 (5%)
Query: 5 EEVSAKRIRKALQELFSVDLNSHKHDLKELIISRFNRLQDLQSKTLKHEEL---VDLDSK 61
E+ SA+R+R ++ L V +NS + D I+ +RLQ L+ T K L +D ++
Sbjct: 493 EDSSAQRVRTFVKRLLQVAVNS-QPDFTASILILISRLQKLRGTTEKLVVLSKDIDPAAR 551
Query: 62 LAVKLHDDE 70
+ ++ +DE
Sbjct: 552 VVAQMQNDE 560
>7298194 [K] KOG0871 Class 2 transcription repressor NC2 beta subunit (Dr1)
Length = 183
Score = 29.6 bits (65), Expect = 2.7
Identities = 17/74 (22%), Positives = 37/74 (49%), Gaps = 4/74 (5%)
Query: 1 MSNPEEVSAKRIRKALQEL----FSVDLNSHKHDLKELIISRFNRLQDLQSKTLKHEELV 56
M N + ++A+ + +AL+ L + + + HD KE+ R + L++ + EEL+
Sbjct: 67 MRNKKTINAEHVLEALERLGFHDYKQEAEAVLHDCKEVAAKRRRQSTRLENLGIPEEELL 126
Query: 57 DLDSKLAVKLHDDE 70
+L K +++
Sbjct: 127 RQQQELFAKAREEQ 140
>At5g63700_2 [K] KOG1946 RNA polymerase I transcription factor UAF
Length = 484
Score = 29.3 bits (64), Expect = 3.6
Identities = 16/58 (27%), Positives = 32/58 (54%), Gaps = 1/58 (1%)
Query: 120 EEMPRTQVVKSVWDYIKEHDLQNPEDRREIICDDAMKPIFGEK-MTMFTLNKILSKHL 176
E M + V + YI+E +L + E ++++ CD+ + IF +K + + +L+ HL
Sbjct: 193 EAMSQHSVESVIRRYIREKNLLDREKKKKVHCDEKLYSIFRKKSINQKRIYTLLNTHL 250
>Hs7661904 [S] KOG1910 Uncharacterized conserved protein
Length = 2092
Score = 28.9 bits (63), Expect = 4.7
Identities = 20/69 (28%), Positives = 39/69 (55%), Gaps = 7/69 (10%)
Query: 2 SNPEEVSAKRIRKALQELFSVDLNSHKHDLKELIISRFNRLQDLQSKTLKHEELVDLDSK 61
SNPEE + + LQE + H +++L ++ ++ LQ + K+E L+DL+ K
Sbjct: 1662 SNPEEQRSSILH--LQEA----VRQHVAQIRQLEKQMYSIMKSLQDDS-KNENLLDLNQK 1714
Query: 62 LAVKLHDDE 70
L ++L+ ++
Sbjct: 1715 LQLQLNQEK 1723
>Hs4758460 [R] KOG0619 FOG: Leucine rich repeat
Length = 560
Score = 28.5 bits (62), Expect = 6.1
Identities = 14/46 (30%), Positives = 24/46 (51%)
Query: 23 DLNSHKHDLKELIISRFNRLQDLQSKTLKHEELVDLDSKLAVKLHD 68
+L H++ ++ + F+RL +L S TL L L S L + H+
Sbjct: 222 ELQFHRNHIRSIAPGAFDRLPNLSSLTLSRNHLAFLPSALFLHSHN 267
>Hs22052726 [T] KOG3519 Invasion-inducing protein TIAM1/CDC24 and related
RhoGEF GTPases
Length = 782
Score = 28.5 bits (62), Expect = 6.1
Identities = 18/64 (28%), Positives = 31/64 (48%)
Query: 6 EVSAKRIRKALQELFSVDLNSHKHDLKELIISRFNRLQDLQSKTLKHEELVDLDSKLAVK 65
++ A IR LQ+L DL+ ++ ++I L DLQ K EE V L + ++
Sbjct: 50 QLCASDIRSRLQQLPQGDLDVLFSNIDDIIKVNSRFLHDLQETASKEEEQVQLVGNIFLE 109
Query: 66 LHDD 69
++
Sbjct: 110 FQEE 113
>Hs22053198 [B] KOG4715 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin
Length = 455
Score = 28.1 bits (61), Expect = 8.0
Identities = 14/43 (32%), Positives = 22/43 (50%)
Query: 105 KKVGLSPELQEFLKVEEMPRTQVVKSVWDYIKEHDLQNPEDRR 147
+K G+ ELQ + E+ + W + KEH LQ+ E+ R
Sbjct: 356 RKGGMDEELQSSQEGEDSNGSNTEPRKWKFQKEHSLQSYEELR 398
>Hs20561496 [R] KOG1648 Uncharacterized conserved protein contains RUN BRK and
TBC domains
Length = 581
Score = 28.1 bits (61), Expect = 8.0
Identities = 18/43 (41%), Positives = 26/43 (59%), Gaps = 1/43 (2%)
Query: 23 DLNSHKHDLKELIISRFNRLQDLQSKTLKHEELVDLDSKLAVK 65
DL+ DL++LI S N++Q LQ K +L +L S LA+K
Sbjct: 86 DLSRKVQDLEQLIESARNQIQGLQENVRKLPKLPNL-SPLAIK 127
>7300529 [R] KOG0255 Synaptic vesicle transporter SVOP and related
transporters (major facilitator superfamily)
Length = 538
Score = 28.1 bits (61), Expect = 8.0
Identities = 12/32 (37%), Positives = 18/32 (55%)
Query: 130 SVWDYIKEHDLQNPEDRREIICDDAMKPIFGE 161
S WD+ KE + ++ E +CDDA K G+
Sbjct: 84 SSWDFDKESNYESITTELEWVCDDAYKLAVGQ 115
>7296950 [Z] KOG0516 Dystonin GAS (Growth-arrest-specific protein) and related
proteins
Length = 7182
Score = 28.1 bits (61), Expect = 8.0
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 29 HDLKELIISRFNRLQDLQSKTLKHEELVDLDSKLA 63
H K+ + SR NRL D+QS +L+ + L++ +L+
Sbjct: 5347 HGEKDQVESRLNRLGDIQSSSLEGKALLEACEELS 5381
>At5g23480_1 [K] KOG1946 RNA polymerase I transcription factor UAF
Length = 275
Score = 28.1 bits (61), Expect = 8.0
Identities = 18/77 (23%), Positives = 37/77 (47%), Gaps = 11/77 (14%)
Query: 110 SPELQEFLK------VEEMPRTQVVKSVWDYIKEHDLQNP----EDRREIICDDAMKPIF 159
S L EFL+ ++ V + +YI+E + P + R+ + CD+ ++ +F
Sbjct: 29 SRNLIEFLESLGRDTTNKISENDVTAIIMNYIREKSRETPLKSKKRRKTVACDEKLRLLF 88
Query: 160 GE-KMTMFTLNKILSKH 175
G K+ + + ++ KH
Sbjct: 89 GAGKINVIKVPDLVEKH 105
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.315 0.132 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,478,651
Number of Sequences: 60738
Number of extensions: 382131
Number of successful extensions: 1002
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 950
Number of HSP's gapped (non-prelim): 52
length of query: 196
length of database: 30,389,216
effective HSP length: 101
effective length of query: 95
effective length of database: 24,254,678
effective search space: 2304194410
effective search space used: 2304194410
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)