ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII3354 suspect: LH UE KOG3715 Amino acid transport and metabolism LST7 amino acid permease Golgi transport protein r_klactII3354 suspect: LH UE KOG3715 Intracellular trafficking, secretion, and vesicular transport LST7 amino acid permease Golgi transport protein
Only best alignment is shown:

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactII3354 1152802  1153563 254  
         (254 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YGR057c [UE] KOG3715 LST7 amino acid permease Golgi transport pr...   219   2e-57

>YGR057c [UE] KOG3715 LST7 amino acid permease Golgi transport protein
          Length = 245

 Score =  219 bits (559), Expect = 2e-57
 Identities = 115/232 (49%), Positives = 156/232 (66%), Gaps = 13/232 (5%)

Query: 9   LSLTHFCDKHGPKVLMVTQIASDLDRCNELLLPEYPKDSYCDSCLLRLPEPKSDATSIRS 68
           +SL HFCDKHGP+++ VTQ A       ELL+P+YP +SYC+SCLL+ PE  +   S+R 
Sbjct: 9   ISLAHFCDKHGPRIISVTQSAEKGTLGEELLVPDYPTESYCESCLLQFPEEST--RSMRC 66

Query: 69  SIDDFYSVSTQYSSIRYQLLSMIIKKTFSEETMSYDGSPFMFCDEHRGLNLAVGFKLEDV 128
            I+D   ++TQYSSIRYQLL+ IIK+ FSEETM YD  PF+F D+ RGLNL +GFKL D 
Sbjct: 67  FIEDVPFITTQYSSIRYQLLNSIIKRAFSEETMIYDNMPFIFFDDLRGLNLVIGFKLYDE 126

Query: 129 HARGNERRYCLILSLEKRNPCDGNDVFKTLSDNWQFIIESLSKLIDHIK-IQAREQLNRR 187
           +ARGNERRYC IL+++ R+    +D  K LS++W FII    K+I +IK I   E L + 
Sbjct: 127 NARGNERRYCFILTVDSRS---HDDSMKMLSEHWNFIIGGFDKMIAYIKNIHKSEFLGKN 183

Query: 188 QTDFAQI-------MGGTYLRENKQKLPVSLADIVNDQLIFLRIHKWNTFIL 232
           +T    +         G+YLR NK K   +L  + +D+ +F+RIHKWN+F+L
Sbjct: 184 KTVENNLETLNNNAFIGSYLRANKSKFGRNLVSLTDDKFLFVRIHKWNSFLL 235


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.321    0.138    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,293,251
Number of Sequences: 60738
Number of extensions: 632291
Number of successful extensions: 1532
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1528
Number of HSP's gapped (non-prelim): 1
length of query: 254
length of database: 30,389,216
effective HSP length: 104
effective length of query: 150
effective length of database: 24,072,464
effective search space: 3610869600
effective search space used: 3610869600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)