ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII3369 check: MH BK KOG1827 Chromatin structure and dynamics Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins
r_klactII3369 check: MH BK KOG1827 Transcription Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII3369 1158504 1155760 -915
(915 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YLR357w [BK] KOG1827 Chromatin remodeling complex RSC subunit RS... 638 0.0
YGR056w [BK] KOG1827 Chromatin remodeling complex RSC subunit RS... 631 e-180
SPBC4B4.03 [BK] KOG1827 Chromatin remodeling complex RSC subunit... 223 1e-57
Hs8922848 [BK] KOG1827 Chromatin remodeling complex RSC subunit ... 92 4e-18
7301208 [BK] KOG1827 Chromatin remodeling complex RSC subunit RS... 84 1e-15
SPAC1250.01 [BK] KOG0386 Chromatin remodeling complex SWI/SNF co... 69 3e-11
SPBC1734.15 [BK] KOG1827 Chromatin remodeling complex RSC subuni... 69 4e-11
CE05310 [BK] KOG1827 Chromatin remodeling complex RSC subunit RS... 69 4e-11
7293772 [K] KOG1083 Putative transcription factor ASH1/LIN-59 66 2e-10
CE05553 [BK] KOG0386 Chromatin remodeling complex SWI/SNF compon... 65 5e-10
SPCC1620.14c [BK] KOG0386 Chromatin remodeling complex SWI/SNF c... 61 7e-09
Hs21071056 [BK] KOG0386 Chromatin remodeling complex SWI/SNF com... 59 3e-08
At3g01770 [K] KOG1474 Transcription initiation factor TFIID subu... 58 6e-08
SPAC1952.05 [BK] KOG1472 Histone acetyltransferase SAGA/ADA cata... 58 8e-08
Hs21071050 [BK] KOG0386 Chromatin remodeling complex SWI/SNF com... 57 1e-07
Hs8922081 [K] KOG1083 Putative transcription factor ASH1/LIN-59 55 4e-07
Hs17449320 [O] KOG2177 Predicted E3 ubiquitin ligase 55 5e-07
Hs14971415 [O] KOG2177 Predicted E3 ubiquitin ligase 55 5e-07
YIL126w [BK] KOG0386 Chromatin remodeling complex SWI/SNF compon... 54 8e-07
Hs4557557 [K] KOG1778 CREB binding protein/P300 and related TAZ ... 54 1e-06
YOR290c [BK] KOG0386 Chromatin remodeling complex SWI/SNF compon... 54 1e-06
At1g20670 [R] KOG0955 PHD finger protein BR140/LIN-49 54 1e-06
At1g06230 [K] KOG1474 Transcription initiation factor TFIID subu... 54 1e-06
Hs4758056 [K] KOG1778 CREB binding protein/P300 and related TAZ ... 52 4e-06
CE28069 [K] KOG1778 CREB binding protein/P300 and related TAZ Zn... 52 4e-06
CE21117 [K] KOG1778 CREB binding protein/P300 and related TAZ Zn... 52 4e-06
At1g73150 [K] KOG1474 Transcription initiation factor TFIID subu... 52 4e-06
7293653 [K] KOG1886 BAH domain proteins 52 5e-06
7291080 [K] KOG1778 CREB binding protein/P300 and related TAZ Zn... 52 5e-06
Hs21071048 [BK] KOG0386 Chromatin remodeling complex SWI/SNF com... 51 7e-06
CE13601 [K] KOG1083 Putative transcription factor ASH1/LIN-59 51 7e-06
CE24921 [R] KOG1632 Uncharacterized PHD Zn-finger protein 51 9e-06
CE15910 [R] KOG1632 Uncharacterized PHD Zn-finger protein 51 9e-06
CE15909 [R] KOG1632 Uncharacterized PHD Zn-finger protein 51 9e-06
At1g32750 [K] KOG0008 Transcription initiation factor TFIID subu... 51 9e-06
>YLR357w [BK] KOG1827 Chromatin remodeling complex RSC subunit
RSC1/Polybromo and related proteins
Length = 889
Score = 638 bits (1645), Expect = 0.0
Identities = 326/688 (47%), Positives = 442/688 (63%), Gaps = 54/688 (7%)
Query: 18 IYELKEENGLEIHPIFHLLPPKRDYPDYYQIIEHPISLSTVRKRMTQYKNPQEFVNDLAR 77
++ LKE++GLEI PIF++LPPK+DYPDYY +I++P+S +T++KR+ Y + Q+F+ND+ +
Sbjct: 28 LFTLKEDSGLEISPIFNVLPPKKDYPDYYAVIKNPVSFNTLKKRIPHYTDAQQFMNDVVQ 87
Query: 78 VTWNARTYNTKDSDVYHYAVILDKCVKDTIIPSLKKDFPNIRYPYLGPLPDEAPLEGVEI 137
+ WNA+TYNT+DS +Y YA++L+K +KDTI P+LK+ +P + YP LGPLPDE E +
Sbjct: 88 IPWNAKTYNTRDSGIYKYALVLEKYLKDTIYPNLKEKYPQLVYPDLGPLPDEPGYEEFQQ 147
Query: 138 EEPEKQQKALPKPKIPAEQDNTIXXXXXXXXXXXXXXXXXXXGGATPNKDFKETGRASRS 197
+ EK ++ AE +++ E R R
Sbjct: 148 KLREKAEEVARANAARAESSSSMNST--------------------------EAARRLRK 181
Query: 198 TMSFNSIPLTRSPGGFRTTEDEYRLA-ANRKEPKXXXXXXXXXXAKRQPPLPKIRISHVS 256
T + S+ PG +++Y + PK P L + + +++
Sbjct: 182 TRT--SVKRESEPGTDTNNDEDYEATDMDIDNPKDADF----------PDLIRKPLININ 229
Query: 257 P----PIINT-----SKSMTPQPLIAKTPVEKKTHMKRGRPPVIDLPYEQRIKNVLKAMK 307
P P+ + S S TPQPL + +T +KRGRPP+IDLPY QR+KNV+K +K
Sbjct: 230 PYTRKPLRDNRSTTPSHSGTPQPLGPRHRQVSRTQVKRGRPPIIDLPYIQRMKNVMKVLK 289
Query: 308 KETTPGGKDLLAAKFERLPDEDREPQYYSVISDPISLDDIKKKVKQRKYKNFHKFQEDVM 367
KE G L FERLPD R+ YY +I++PISL DI KKVK R+YK F +FQ D
Sbjct: 290 KEVLDSGIGLTDL-FERLPDRHRDANYYIMIANPISLQDINKKVKTRRYKTFQEFQNDFN 348
Query: 368 LMLSNYRMYHRSQPGEVRRAADFETLFNAHCQHELSRPDIDFMTDGELKYPLETVDVNGK 427
LML+N+R+ HR P ++ + E F + + ELS+PD F+ +GEL+YPL+ V VN
Sbjct: 349 LMLTNFRISHRGDPESIKISNILEKTFTSLARFELSKPDRSFIPEGELRYPLDEVIVNNI 408
Query: 428 TYKIGDWILLRNANDETKPTVAQIFRLWYTSDGTRWLNCCWYLRPEQTVHRVDRLFYKNE 487
+Y +GDW LLRN ND KP V QIFRLW T DG +WLN CWY RPEQTVHRVDRLFYKNE
Sbjct: 409 SYHVGDWALLRNQNDPQKPIVGQIFRLWKTPDGKQWLNACWYYRPEQTVHRVDRLFYKNE 468
Query: 488 VVKSGQYRDHLVEEIVGKCYVCHFTRFQRGDPDVAIEGPLFVCEYRYNETEKVFNKIRTW 547
V+K+GQYRDHLV +VGKCYV HFTR+QRG+PD+ +EGPLFVCE+RYNE++K+FNKIRTW
Sbjct: 469 VMKTGQYRDHLVSNLVGKCYVIHFTRYQRGNPDMKLEGPLFVCEFRYNESDKIFNKIRTW 528
Query: 548 KGCLPEEVRESEDPTIPVVGRKFYKYESPIKHLLPANATVNDPLPQPTEGAVNAPPLVGA 607
K CLPEE+R+ ++ TIPV GRKF+KY SPI+HLLPANAT +D +P+PT G+ +APPLVGA
Sbjct: 529 KACLPEEIRDLDEATIPVNGRKFFKYPSPIRHLLPANATPHDRVPEPTMGSPDAPPLVGA 588
Query: 608 VYLRPKLRRDDLGEYSTSDDCXXXXXXXXXXXXXXXXXDETGTVLTNLHSSAAVPK---- 663
VY+RPK++RDDLGEY+TSDDC ETGT+ TN ++ A+PK
Sbjct: 589 VYMRPKMQRDDLGEYATSDDCPRYIIRPNDSPEEGQVDIETGTITTNTPTANALPKTGYS 648
Query: 664 -GRLSSLSRNSAQSPISSLQSRPTQYYP 690
+LSSL N + + + + Q P
Sbjct: 649 SSKLSSLRYNRSSMSLENQNAIGQQQIP 676
Score = 114 bits (285), Expect = 7e-25
Identities = 67/162 (41%), Positives = 94/162 (57%), Gaps = 12/162 (7%)
Query: 756 YRSTAIINDLITQMKNAGGPTGHIVVDAPSACILPIPLTKNIELLQRADYSSQIRRLGKD 815
Y II+DL +Q G G+I++DA S+ +LPI +TKN+++LQR D SQ +R G++
Sbjct: 720 YNIPTIIDDLTSQASR--GNLGNIMIDAASSFVLPISITKNVDVLQRTDLHSQTKRSGRE 777
Query: 816 NVPRRRRAKGEPLWFRGPSVVVSERLLNSG---TDVPLNRWF---KKQKTE----KSTDT 865
+ ++ KGE LWFRGPSV+V+ER++NSG +PLNRWF KK+K E + T
Sbjct: 778 EMFPWKKTKGEILWFRGPSVIVNERIINSGDPHLSLPLNRWFTTNKKRKLEYEEVEETME 837
Query: 866 DVTATXXXXXXXXXXXXXXXXTFPSSFPKGLRPSVEFMAFKL 907
DVT + P F GLRPS +F A +L
Sbjct: 838 DVTGKDKDDDGLEPDVENEKESLPGPFVLGLRPSAKFTAHRL 879
>YGR056w [BK] KOG1827 Chromatin remodeling complex RSC subunit
RSC1/Polybromo and related proteins
Length = 928
Score = 631 bits (1627), Expect = e-180
Identities = 321/680 (47%), Positives = 428/680 (62%), Gaps = 67/680 (9%)
Query: 7 LKEVIKPLVNIIYELKEENGLEIHPIFHLLPPKRDYPDYYQIIEHPISLSTVRKRMTQYK 66
L++++K + ++ LK+ENG+EI+PIF++LPPK++YPDYY II +PISL+T++KR+ Y
Sbjct: 9 LQKLLKTQYDAVFHLKDENGIEIYPIFNVLPPKKEYPDYYIIIRNPISLNTLKKRLPHYT 68
Query: 67 NPQEFVNDLARVTWNARTYNTKDSDVYHYAVILDKCVKDTIIPSLKKDFPNIRYPYLGPL 126
+PQ+FVND A++ WNA TYN KDS +Y YA++L+ +K I+ +++K +P + YP LG +
Sbjct: 69 SPQDFVNDFAQIPWNAMTYNAKDSVIYKYAILLESFIKGKIVHNIRKHYPEVTYPSLGRI 128
Query: 127 PDEAPLEGVEIEEPEKQQKALPKPKIPAEQDNTIXXXXXXXXXXXXXXXXXXXGGATPNK 186
P EI Q L I ++++
Sbjct: 129 P--------EIFAESMQPSDLSSNPINTQEND---------------------------- 152
Query: 187 DFKETGRASRSTMSFNSIPLTRSPGGFRTTEDEYRLAANRKEPKXXXXXXXXXXAKRQPP 246
++ G M+F L S + T +YR+ K P
Sbjct: 153 --EKAGLNPEMKMAF--AKLDSSITERKPTNQDYRM-----------------QQKNSPA 191
Query: 247 LPKIRISHVSPPIINTSKSMTPQPLIAK---TPVEKKTHMKRGRPPVIDLPYEQRIKNVL 303
P S P+ +P P++ T KTH++RGRPPVIDLPY RIKN+L
Sbjct: 192 FPTHSASITPQPL------ASPTPVVNYANITSAHPKTHVRRGRPPVIDLPYVLRIKNIL 245
Query: 304 KAMKKETTPGGKDLLAAKFERLPDEDREPQYYSVISDPISLDDIKKKVKQRKYKNFHKFQ 363
K M++E K L FE+LPD + EP YYSVI+DPI L DI+KKVK RKY+NFH F+
Sbjct: 246 KMMRREVDQNNKTLTLC-FEKLPDRNEEPTYYSVITDPICLMDIRKKVKSRKYRNFHTFE 304
Query: 364 EDVMLMLSNYRMYHRSQPGEVRRAADFETLFNAHCQHELSRPDIDFMTDGELKYPLETVD 423
ED LML+N+++Y+ + RA E FN + ELS+PD D++ +GEL+YPL+ V+
Sbjct: 305 EDFQLMLTNFKLYYSQDQSNIIRAQLLEKNFNRLVRIELSKPDEDYLPEGELRYPLDDVE 364
Query: 424 VNGKTYKIGDWILLRNANDETKPTVAQIFRLWYTSDGTRWLNCCWYLRPEQTVHRVDRLF 483
+N + Y+IGDW+LL N ND KP V QIFRLW T+DG +WLN CWY RPEQTVHRVDRLF
Sbjct: 365 INDEKYQIGDWVLLHNPNDINKPIVGQIFRLWSTTDGNKWLNACWYFRPEQTVHRVDRLF 424
Query: 484 YKNEVVKSGQYRDHLVEEIVGKCYVCHFTRFQRGDPDVAIEGPLFVCEYRYNETEKVFNK 543
YKNEV+K+GQYRDH +++I GKCYV HFTRFQRGDP + GP FVCE+RYNE++KVFNK
Sbjct: 425 YKNEVMKTGQYRDHPIQDIKGKCYVIHFTRFQRGDPSTKVNGPQFVCEFRYNESDKVFNK 484
Query: 544 IRTWKGCLPEEVRESEDPTIPVVGRKFYKYESPIKHLLPANATVNDPLPQPTEGAVNAPP 603
IRTWK CLPEE+R+ ++PTIPV GRKF+KY SPI LLPANAT+ND +P+PTEGA APP
Sbjct: 485 IRTWKACLPEELRDQDEPTIPVNGRKFFKYPSPIADLLPANATLNDKVPEPTEGAPTAPP 544
Query: 604 LVGAVYLRPKLRRDDLGEYSTSDDCXXXXXXXXXXXXXXXXXDETGTVLTNLHSSAAVPK 663
LVGAVYL PKL RDDLGEYSTSDDC ETGT++T+ +++++P+
Sbjct: 545 LVGAVYLGPKLERDDLGEYSTSDDCPRYIIRPNDPPEEGKIDYETGTIITDTLTTSSMPR 604
Query: 664 GRLSSLSRNSAQSPISSLQS 683
SS R S+ S
Sbjct: 605 VNSSSTIRLPTLKQTKSIPS 624
Score = 568 bits (1463), Expect = e-161
Identities = 306/697 (43%), Positives = 405/697 (57%), Gaps = 47/697 (6%)
Query: 205 PLTRSPGGFRTTEDEYRLAANRKEPKXXXXXXXXXXAKRQPPLPKIRISHVSPPIINT-S 263
P S T E++ + N E K +R+P R+ + P T S
Sbjct: 138 PSDLSSNPINTQENDEKAGLN-PEMKMAFAKLDSSITERKPTNQDYRMQQKNSPAFPTHS 196
Query: 264 KSMTPQPLIAKTPV---------EKKTHMKRGRPPVIDLPYEQRIKNVLKAMKKETTPGG 314
S+TPQPL + TPV KTH++RGRPPVIDLPY RIKN+LK M++E
Sbjct: 197 ASITPQPLASPTPVVNYANITSAHPKTHVRRGRPPVIDLPYVLRIKNILKMMRREVDQNN 256
Query: 315 KDLLAAKFERLPDEDREPQYYSVISDPISLDDIKKKVKQRKYKNFHKFQEDVMLMLSNYR 374
K L FE+LPD + EP YYSVI+DPI L DI+KKVK RKY+NFH F+ED LML+N++
Sbjct: 257 KTLTLC-FEKLPDRNEEPTYYSVITDPICLMDIRKKVKSRKYRNFHTFEEDFQLMLTNFK 315
Query: 375 MYHRSQPGEVRRAADFETLFNAHCQHELSRPDIDFMTDGELKYPLETVDVNGKTYKIGDW 434
+Y+ + RA E FN + ELS+PD D++ +GEL+YPL+ V++N + Y+IGDW
Sbjct: 316 LYYSQDQSNIIRAQLLEKNFNRLVRIELSKPDEDYLPEGELRYPLDDVEINDEKYQIGDW 375
Query: 435 ILLRNANDETKPTVAQIFRLWYTSDGTRWLNCCWYLRPEQTVHRVDRLFYKNEVVKSGQY 494
+LL N ND KP V QIFRLW T+DG +WLN CWY RPEQTVHRVDRLFYKNEV+K+GQY
Sbjct: 376 VLLHNPNDINKPIVGQIFRLWSTTDGNKWLNACWYFRPEQTVHRVDRLFYKNEVMKTGQY 435
Query: 495 RDHLVEEIVGKCYVCHFTRFQRGDPDVAIEGPLFVCEYRYNETEKVFNKIRTWKGCLPEE 554
RDH +++I GKCYV HFTRFQRGDP + GP FVCE+RYNE++KVFNKIRTWK CLPEE
Sbjct: 436 RDHPIQDIKGKCYVIHFTRFQRGDPSTKVNGPQFVCEFRYNESDKVFNKIRTWKACLPEE 495
Query: 555 VRESEDPTIPVVGRKFYKYESPIKHLLPANATVNDPLPQPTEGAVNAPPLVGAVYLRPKL 614
+R+ ++PTIPV GRKF+KY SPI LLPANAT+ND +P+PTEGA APPLVGAVYL PKL
Sbjct: 496 LRDQDEPTIPVNGRKFFKYPSPIADLLPANATLNDKVPEPTEGAPTAPPLVGAVYLGPKL 555
Query: 615 RRDDLGEYSTSDDCXXXXXXXXXXXXXXXXXDETGTVLTNLHSSAAVP------------ 662
RDDLGEYSTSDDC ETGT++T+ +++++P
Sbjct: 556 ERDDLGEYSTSDDCPRYIIRPNDPPEEGKIDYETGTIITDTLTTSSMPRVNSSSTIRLPT 615
Query: 663 ----KGRLSSLSRNSAQSPISSLQSRPTQYYPPPMPKGXXXXXXXXXXXXXXXXXXXXXX 718
K SS R+S+ +P+ T +
Sbjct: 616 LKQTKSIPSSNFRSSSNTPLLHQNFNQTSNF---------LKLENMNNSSHNLLSHPSVP 666
Query: 719 XXXXXXXXXXXXXXXXGTGHGKGSISTSAGDGSKPIPYRSTAIINDLITQMKNAGGPTGH 778
+ + +S++A + +++IN L H
Sbjct: 667 KFQSPSLLEQSSRSKYHSAKKQTQLSSTAPKKPASKSFTLSSMINTLTAHTSKYN--FNH 724
Query: 779 IVVDAPSACILPIPLTKNIELLQRADYSSQ-----IRRLGKDNVPRRRRAKGEPLWFRGP 833
IV++AP A ++P+P+ KNI +Q + S+ + LG + A + +WF+GP
Sbjct: 725 IVIEAPGAFVVPVPMEKNIRTIQSTERFSRSNLKNAQNLGNTAINDINTANEQIIWFKGP 784
Query: 834 SVVVSERLLNSGTD---VPLNRWFKKQKTEKSTDTDV 867
V ++ER+++SG D VPLNRWF K K K D+
Sbjct: 785 GVKITERVIDSGNDLVRVPLNRWFCKNKRRKLDYEDI 821
>SPBC4B4.03 [BK] KOG1827 Chromatin remodeling complex RSC subunit
RSC1/Polybromo and related proteins
Length = 803
Score = 223 bits (567), Expect = 1e-57
Identities = 128/344 (37%), Positives = 191/344 (55%), Gaps = 22/344 (6%)
Query: 279 KKTHMKRGRPPVIDLPYEQRIKNVLKAMKKETTPGGKDLLAAKFERLPDEDREPQYYSVI 338
K+ ++ P+ L E R K +++ +++ G+ L A FERLPD P+YY I
Sbjct: 197 KRRKLQPSSKPLSSL--EARAKVIMRQVRRYRDGSGRQLFAP-FERLPDPRMFPEYYQAI 253
Query: 339 SDPISLDDIKKKVKQRKYKNFHKFQEDVMLMLSNYRMYHRSQPGEVRRAADFETLFNAHC 398
P++L+ I+KK+ + +Y+ +F +D LM N + ++ +V R ADF + A
Sbjct: 254 EQPMALEVIQKKLSKHRYETIEQFVDDFNLMFDNAKSFN-DPSSQVYRDADFLKNYLADV 312
Query: 399 QH-ELSRPDIDFM---TDGELKYPLE------TVDVNGKTYKIGDWILLRNANDETKPTV 448
E + D +F TD L V ++G +GDW+L+RN D +KP V
Sbjct: 313 LRLEAGKLDSEFFNYETDSRASPQLPKNDIQPAVSIDGTLLNVGDWVLIRNPADSSKPIV 372
Query: 449 AQIFRLWYTSDGTRWLNCCWYLRPEQTVHRVDRLFYKNEVVKSGQYRDHLVEEIVGKCYV 508
+QI+R+W + D ++ CWYLRPEQTVHR D +FY+NEV K+ YRDH V EIVG+C+V
Sbjct: 373 SQIYRIWKSDDDINYVTVCWYLRPEQTVHRADAVFYENEVFKTSLYRDHPVSEIVGRCFV 432
Query: 509 CHFTRFQRGDPDVAIEGPLFVCEYRYNETEKVFNKIRTWKGCLPEEVRESEDPTI----P 564
+ TR+ RG P P+FVCE RYN+ K F+KI++WK C+P+EV SE I P
Sbjct: 433 MYITRYIRGRPKGIRSTPVFVCESRYNDDTKQFSKIKSWKACMPQEVSGSEYEMILFDRP 492
Query: 565 VVGRKFYKYESPIKHLLPANATVNDPLPQPTEGAVNAPPLVGAV 608
+ K SP+ HLL A+ + P P T+ + P G++
Sbjct: 493 IT---LTKVASPLLHLL-ASKSQGLPSPATTDSNTHMLPSQGSL 532
Score = 57.4 bits (137), Expect = 1e-07
Identities = 28/98 (28%), Positives = 56/98 (56%), Gaps = 2/98 (2%)
Query: 12 KPLVNIIYELKEENGLEIHPIFHLLPPKRDYPDYYQIIEHPISLSTVRKRMT--QYKNPQ 69
K ++ + ++ +G ++ F LP R +P+YYQ IE P++L ++K+++ +Y+ +
Sbjct: 216 KVIMRQVRRYRDGSGRQLFAPFERLPDPRMFPEYYQAIEQPMALEVIQKKLSKHRYETIE 275
Query: 70 EFVNDLARVTWNARTYNTKDSDVYHYAVILDKCVKDTI 107
+FV+D + NA+++N S VY A L + D +
Sbjct: 276 QFVDDFNLMFDNAKSFNDPSSQVYRDADFLKNYLADVL 313
>Hs8922848 [BK] KOG1827 Chromatin remodeling complex RSC subunit
RSC1/Polybromo and related proteins
Length = 289
Score = 92.0 bits (227), Expect = 4e-18
Identities = 48/138 (34%), Positives = 69/138 (49%)
Query: 429 YKIGDWILLRNANDETKPTVAQIFRLWYTSDGTRWLNCCWYLRPEQTVHRVDRLFYKNEV 488
Y +GD++ + A +P + I RLW S G +WL CW+ RP +T H R F + EV
Sbjct: 115 YHVGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNETFHLATRKFLEKEV 174
Query: 489 VKSGQYRDHLVEEIVGKCYVCHFTRFQRGDPDVAIEGPLFVCEYRYNETEKVFNKIRTWK 548
KS Y V +I+GKC V + + P+ + +FVCE RY+ K F KI+ W
Sbjct: 175 FKSDYYNKVPVSKILGKCVVMFVKEYFKLCPENFRDEDVFVCESRYSAKTKSFKKIKLWT 234
Query: 549 GCLPEEVRESEDPTIPVV 566
+ D +PVV
Sbjct: 235 MPISSVRFVPRDVPLPVV 252
>7301208 [BK] KOG1827 Chromatin remodeling complex RSC subunit RSC1/Polybromo
and related proteins
Length = 1654
Score = 83.6 bits (205), Expect = 1e-15
Identities = 60/252 (23%), Positives = 113/252 (44%), Gaps = 37/252 (14%)
Query: 332 PQYYSVISDP----ISLDDIKKKVKQRKYKNFHKFQEDVMLMLSNYRMYHRSQPGEVRRA 387
P+Y + P ISLD +K+++ + YK +QED+ L R R+ + +
Sbjct: 791 PEYDEIGEGPKVRGISLDLVKRRLDKGAYKRLDVYQEDIFACLERARKLSRTDSDIFQDS 850
Query: 388 ADFETLF----NAHCQHELSRPDIDF-----MTDGEL----------------------- 415
+ +T F + C+ LS ++F M D EL
Sbjct: 851 IELQTYFIRKRDELCKDTLSSSALNFSLERLMADVELCRQQKMQQEEQDQEQDKEKDEFN 910
Query: 416 KYPLETVDVNGKTYKIGDWILLRNANDETKPTVAQIFRLWYTSDGTRWLNCCWYLRPEQT 475
E++ +N + + GD++ ++ ++ P++ I RLW + + + ++RP +T
Sbjct: 911 AAKGESMTINQQVFSPGDYVYVQMPENKI-PSICCIERLWTSPTNEKLMQASIFVRPHET 969
Query: 476 VHRVDRLFYKNEVVKSGQYRDHLVEEIVGKCYVCHFTRFQRGDPDVAIEGPLFVCEYRYN 535
H R F + EV KS + ++++ G CYV + + + P+ E ++VCE RYN
Sbjct: 970 YHVTTRKFLEKEVFKSSLSQTISMDKVQGMCYVMNIKDYIKMRPENLPEKDVYVCESRYN 1029
Query: 536 ETEKVFNKIRTW 547
+ F K+++W
Sbjct: 1030 IQGRWFKKLKSW 1041
Score = 58.5 bits (140), Expect = 4e-08
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 29 IHPIFHLLPPKRDYPDYYQIIEHPISLSTV--RKRMTQYKNPQEFVNDLARVTWNARTYN 86
+H +F LLP K+ YPDYY +IEHPI L + + +M Y + E DL ++T NA +N
Sbjct: 214 MHRMFQLLPSKKIYPDYYDVIEHPIDLRLIATKIQMNAYSSLAEMERDLLQMTKNACLFN 273
Query: 87 TKDSDVYHYAVILDK 101
S +Y A L +
Sbjct: 274 EPGSQIYKDAKSLKR 288
Score = 58.2 bits (139), Expect = 6e-08
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 430 KIGDWILLRNANDETKPTVAQIFRLWYTSDGTRWLNCCWYLRPEQTVHRVDRLFYKNEVV 489
K GD++ + A K +VAQ+ ++W +G + W L P +T + + FY+ E++
Sbjct: 1123 KTGDFVYV--ATQTGKQSVAQVQQIW-EQNGKSYFKGPWLLPPSETTPGLGKQFYRQELL 1179
Query: 490 KSGQYRDHLVEEIVGKCYVCHFTRFQRGDPDVAIEGPLFVCEYRYNETEKVFNKIRT 546
S V IVG+C V ++ F P E +++CE Y+E +K K+ T
Sbjct: 1180 LSTVEEVSPVVGIVGRCAVLEYSEFISSRPTEISESDVYICESVYDELKKALRKLVT 1236
Score = 57.8 bits (138), Expect = 8e-08
Identities = 36/125 (28%), Positives = 65/125 (51%), Gaps = 16/125 (12%)
Query: 2 SSKVPLKEVIKPLVNII------YELKEENGLEIHPIFHLLPPKRDYPDYYQIIEHPISL 55
S+++ + IK + I Y L +E+ F PP++ YPDYY II++PI +
Sbjct: 503 SNRIAINAAIKKKILSIQKYLVDYSLGNRRPIEM---FMEKPPRKIYPDYYDIIQNPIDM 559
Query: 56 STVRK--RMTQYKNPQEFVNDLARVTWNARTYNTKDSDVYHYAVILDKCVKDTIIPSLKK 113
+T+ R +Y ++ V+D + N R YN + S++Y A IL++ + + + K
Sbjct: 560 NTIEHNIRTDRYAAVEDVVSDYRLMFSNCRQYNEEGSNIYEDANILERALNEKL-----K 614
Query: 114 DFPNI 118
+FP +
Sbjct: 615 EFPGL 619
Score = 55.1 bits (131), Expect = 5e-07
Identities = 27/81 (33%), Positives = 42/81 (51%)
Query: 297 QRIKNVLKAMKKETTPGGKDLLAAKFERLPDEDREPQYYSVISDPISLDDIKKKVKQRKY 356
+R+ + +K+ P GK L+ F +LP + P YY +I +PI +D I +K+KQ Y
Sbjct: 643 ERLWQFYETVKEYQEPKGKRQLSLIFTKLPSKSEYPDYYDIIREPIDMDRIAQKLKQGAY 702
Query: 357 KNFHKFQEDVMLMLSNYRMYH 377
D +LML N Y+
Sbjct: 703 DTLDDLAADFLLMLENACKYN 723
Score = 52.8 bits (125), Expect = 2e-06
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 18 IYELKEENGL-EIHPIFHLLPPKRDYPDYYQIIEHPISLSTVRKRMTQ--YKNPQEFVND 74
+ E +E G ++ IF LP K +YPDYY II PI + + +++ Q Y + D
Sbjct: 652 VKEYQEPKGKRQLSLIFTKLPSKSEYPDYYDIIREPIDMDRIAQKLKQGAYDTLDDLAAD 711
Query: 75 LARVTWNARTYNTKDSDVYHYAVILDK 101
+ NA YN DS +Y A++L +
Sbjct: 712 FLLMLENACKYNEPDSQIYKDALVLQQ 738
>SPAC1250.01 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1199
Score = 69.3 bits (168), Expect = 3e-11
Identities = 41/110 (37%), Positives = 64/110 (57%), Gaps = 3/110 (2%)
Query: 7 LKEVIKPLVNIIYELKEENGLEIHPIFHLLPPKRDYPDYYQIIEHPISLSTVRKRM--TQ 64
L+ V + + EL+++NG ++ +F LP K+ YPDYY II+ PI+L +RK + T
Sbjct: 1066 LRRVCLEIYKAVNELEDDNGRPLNKLFLELPSKKLYPDYYMIIKSPIALDAIRKHINGTF 1125
Query: 65 YKNPQEFVNDLARVTWNARTYNTKDSDVYHYAVILDKCVKDTIIPSLKKD 114
YK + +DL + NARTYN + S VY A + + +T I L++D
Sbjct: 1126 YKTLEAMKSDLMTMFNNARTYNEEGSFVYEDANKMQTAM-ETKIEELEED 1174
>SPBC1734.15 [BK] KOG1827 Chromatin remodeling complex RSC subunit
RSC1/Polybromo and related proteins
Length = 542
Score = 68.6 bits (166), Expect = 4e-11
Identities = 36/97 (37%), Positives = 61/97 (62%), Gaps = 2/97 (2%)
Query: 2 SSKVPLKEVIKPLVNIIYELKEENGLEIHPIFHLLPPKRDYPDYYQIIEHPISLSTVRKR 61
++++ + +VI+ +++ ++E K+E G + IF LP KR YPDYY+II+ P+++ + KR
Sbjct: 139 TNEIDVPKVIQNILDALHEEKDEQGRFLIDIFIDLPSKRLYPDYYEIIKSPMTIKMLEKR 198
Query: 62 MT--QYKNPQEFVNDLARVTWNARTYNTKDSDVYHYA 96
+Y + FV DL ++ NA+TYN S VY A
Sbjct: 199 FKKGEYTTLESFVKDLNQMFINAKTYNAPGSFVYEDA 235
Score = 60.5 bits (145), Expect = 1e-08
Identities = 36/98 (36%), Positives = 53/98 (53%), Gaps = 6/98 (6%)
Query: 4 KVPLKEVIKPLVNIIYELKEENGLEIHPIFHLLPPKRDYPDYYQIIEHPISLSTVRKRMT 63
K EV++ LV LK+ G IF LP KR +PDYYQII+ PI +R +
Sbjct: 12 KTKFDEVLEALVG----LKDNEGNPFDDIFEELPSKRYFPDYYQIIQKPICYKMMRNKAK 67
Query: 64 --QYKNPQEFVNDLARVTWNARTYNTKDSDVYHYAVIL 99
+Y + +F +D+ + NA+TYN S VY +V++
Sbjct: 68 TGKYLSMGDFYDDIRLMVSNAQTYNMPGSLVYECSVLI 105
>CE05310 [BK] KOG1827 Chromatin remodeling complex RSC subunit RSC1/Polybromo
and related proteins
Length = 1879
Score = 68.6 bits (166), Expect = 4e-11
Identities = 57/256 (22%), Positives = 100/256 (38%), Gaps = 42/256 (16%)
Query: 341 PISLDDIKKKVKQRKYKNFHKFQEDVMLMLSNYRMYHRSQPGEVRRAADFETLF------ 394
P +LD IK + + +Y+ K Q+D + R ++ A + F
Sbjct: 873 PFTLDQIKMNIDKCRYRRLDKLQKDFFDLFERARELSKAGSSMYEAACTLQKSFIVERDT 932
Query: 395 --------NAHCQHELSRPDID------------------------FMTDGELKYPLETV 422
NA+C E DID + E + +E +
Sbjct: 933 RCKDLIHSNAYCVIE---KDIDEAIEKERSLKAKEEHDEEGGNKPAMVKRHESEVEMEDI 989
Query: 423 DVNGKTYKIGDWILLRNANDETKPT-VAQIFRLWYTSDGTRWLNCCWYLRPEQTVHRVDR 481
+++G Y + + ++++ P + +I R + +G + L W RPE+T+H R
Sbjct: 990 EIDGTKYVAPCYAYVSRSDEKKTPLHIFRIERTFKDENGEKALQGHWVYRPEETLHLASR 1049
Query: 482 LFYKNEVVKSGQYRDHLVEEIVGKCYVCHFTRFQRGDPDVAIEGPLFVCEYRYNETEKVF 541
F K EV + L E + G+C V + + E +++CEY+Y+ K F
Sbjct: 1050 KFMKQEVFLTPFRDTVLAERLRGRCVVISLSTYTSKVITEYSEEDVYLCEYKYHGKPKYF 1109
Query: 542 NKIRTWKGCLPEEVRE 557
K+RTW +E E
Sbjct: 1110 AKLRTWPFTAEDEELE 1125
Score = 59.7 bits (143), Expect = 2e-08
Identities = 37/113 (32%), Positives = 56/113 (48%), Gaps = 6/113 (5%)
Query: 426 GKTYKIGDWILLRNANDETKPTVAQIFRLWYTSDGTRWLNCCWYLRPEQTVHRVDRLFYK 485
GK + +G +L+ N N + V +I ++W DG+ W + CW+ RP +T+H RLF+K
Sbjct: 1201 GKFFWLGQCVLVFN-NMKPLCDVMKINKIWREKDGSEWFSGCWFARPSETIHDEGRLFFK 1259
Query: 486 NEVVKSGQYRDHLVE---EIVGKCYVCHFTRFQRGDPDVAIEGPLFVCEYRYN 535
NEV+ YR+ EI C V + + E +FVCE N
Sbjct: 1260 NEVI--AVYRNDETRKLCEIQRVCDVMPAKLYIKQRQTEVSECDVFVCETMVN 1310
Score = 58.2 bits (139), Expect = 6e-08
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 1/111 (0%)
Query: 282 HMKRGRPPVIDLPYE-QRIKNVLKAMKKETTPGGKDLLAAKFERLPDEDREPQYYSVISD 340
H + ++ LP E Q++ + K+MK G LA F RLP ++ P YY VI
Sbjct: 696 HQRSMEDAIMQLPIEEQKMWRLFKSMKDVREEGTNRPLAVNFMRLPSKEEFPAYYDVIKK 755
Query: 341 PISLDDIKKKVKQRKYKNFHKFQEDVMLMLSNYRMYHRSQPGEVRRAADFE 391
P+ + IK K++ R+Y D MLMLSN ++ + + A +
Sbjct: 756 PMDMMRIKHKLENRQYVTLLDVVSDFMLMLSNACKFNETDSDIYKEAVSLQ 806
Score = 56.6 bits (135), Expect = 2e-07
Identities = 30/113 (26%), Positives = 54/113 (47%)
Query: 302 VLKAMKKETTPGGKDLLAAKFERLPDEDREPQYYSVISDPISLDDIKKKVKQRKYKNFHK 361
V+ ++K + G + + F RLP EP+YY + +PI + I+ K+K +Y + +
Sbjct: 49 VMAQIRKHRSSAGNNSVFESFLRLPPRRFEPEYYEQVKEPIDVTTIQHKLKIPEYLTYDQ 108
Query: 362 FQEDVMLMLSNYRMYHRSQPGEVRRAADFETLFNAHCQHELSRPDIDFMTDGE 414
F +D M+ + N Y++ + E + + LF A S +D D E
Sbjct: 109 FNDDFMMFIKNNLTYYKDESEEHKDMMKIQELFEAATAKVKSGEYLDDAEDEE 161
Score = 55.8 bits (133), Expect = 3e-07
Identities = 33/100 (33%), Positives = 56/100 (56%), Gaps = 4/100 (4%)
Query: 8 KEVIKPLVNIIYELKEENGLEIHPI--FHLLPPKRDYPDYYQIIEHPISLSTVRKRMTQY 65
K +++ L N+I+ + + P F LP + YP+YYQII++PI + T+R R+ +
Sbjct: 533 KAMMQGLWNVIHSYRVASNPGHWPAGAFIQLPSAKQYPEYYQIIQNPIDMKTIRMRIDGH 592
Query: 66 KNPQ--EFVNDLARVTWNARTYNTKDSDVYHYAVILDKCV 103
+ PQ +ND + NAR +N S ++ A+ L+K V
Sbjct: 593 QYPQVDAMINDCRVMFSNARDFNEPRSMIHMDAIQLEKAV 632
>7293772 [K] KOG1083 Putative transcription factor ASH1/LIN-59
Length = 2167
Score = 66.2 bits (160), Expect = 2e-10
Identities = 53/184 (28%), Positives = 87/184 (46%), Gaps = 15/184 (8%)
Query: 372 NYRMYHRSQPGEVRRAADFETLFNAHCQHELS--RPDIDFMTDGELKYPLETVDVNGKTY 429
NY+ R +P EV R E ++ LS R D+ + G+ Y L + + ++
Sbjct: 1835 NYQC-ERCEPREVDREIPLEEFTEEGHRYYLSLMRGDLQ-VRQGDAVYVLRDIPIKDESG 1892
Query: 430 KIGDWILLRNANDETKPTV----AQIFR---LWYTSDGTRWLNCCWYLRPEQTVHRVDRL 482
K+ + + ET + IFR LW G R++ +LRP +T H R
Sbjct: 1893 KV---LPTKKHTYETIGAIDYQECDIFRVEHLWKNELGKRFIFGHHFLRPHETFHEPSRR 1949
Query: 483 FYKNEVVKSGQYRDHLVEEIVGKCYVCHFTRFQRGDP-DVAIEGPLFVCEYRYNETEKVF 541
FY NEVV+ Y +E ++G+C+V T F +G P + E ++CE R ++T + F
Sbjct: 1950 FYPNEVVRVSLYEVVPIELVIGRCWVLDRTTFCKGRPMECNDEDHCYICELRVDKTARFF 2009
Query: 542 NKIR 545
+K +
Sbjct: 2010 SKAK 2013
>CE05553 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1474
Score = 65.1 bits (157), Expect = 5e-10
Identities = 42/153 (27%), Positives = 71/153 (45%), Gaps = 13/153 (8%)
Query: 7 LKEVIKPLVNIIYELKEENGLEIHPIFHLLPPKRDYPDYYQIIEHPISLSTVRKRMT--Q 64
L E I ++++I E K E+G I +F LP +++ PDYYQ+I P+ + K++ +
Sbjct: 1182 LAEKINEMLDVILEYKNEDGELIADVFQTLPTRKELPDYYQVISKPMDFDRINKKIETGR 1241
Query: 65 YKNPQEFVNDLARVTWNARTYNTKDSDVYHYAVILDKCVKDTIIPSLKKDFPNIRYPYLG 124
Y +E +D+ + NA+TYN + S++Y +TI K+ + P
Sbjct: 1242 YTVMEELNDDMNLLVNNAQTYNEEGSEIY--------VSSETIGKLWKEQYDKFMNP--- 1290
Query: 125 PLPDEAPLEGVEIEEPEKQQKALPKPKIPAEQD 157
P P E P++ E P P+ D
Sbjct: 1291 PKPVEEPVKKKEPSTPSTSSSRPSTSGTPSVSD 1323
>SPCC1620.14c [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2
and related ATPases (DNA/RNA helicase superfamily)
Length = 430
Score = 61.2 bits (147), Expect = 7e-09
Identities = 44/145 (30%), Positives = 76/145 (52%), Gaps = 6/145 (4%)
Query: 18 IYELKEENGLEIHPIFHLLPPKRDYPDYYQIIEHPISLSTVRKRM--TQYKNPQEFVNDL 75
+Y L+ E+G ++ +F P ++ YPDYY II+ PI+L +++ + +Y + E + D
Sbjct: 279 LYNLQSEDGRFVNGLFLYPPNRKLYPDYYIIIKRPIALGKIKRNIKNDRYGDVGELIADF 338
Query: 76 ARVTWNARTYNTKDSDVYHYAVILDKCVKDTIIPSLKKDFPNIRYPYLGPLPDEAPLEGV 135
+ NA TYN + S VY A +++K +K+ +I L+K+ N + Y +E V
Sbjct: 339 MLMFNNAYTYNEEHSIVYEDAKLMEKTLKE-VIEDLEKN--NSLHAYEEEALNEEQASLV 395
Query: 136 EIEEPEKQQKALPKPKIPAEQDNTI 160
+E E + L + AE D I
Sbjct: 396 FLENSE-AELPLDSGIVSAEDDKVI 419
>Hs21071056 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1647
Score = 59.3 bits (142), Expect = 3e-08
Identities = 30/105 (28%), Positives = 54/105 (50%), Gaps = 5/105 (4%)
Query: 278 EKKTHMKRGRPPVIDLP-----YEQRIKNVLKAMKKETTPGGKDLLAAKFERLPDEDREP 332
E K KRGRPP L +++K ++ A+ K L+ F +LP P
Sbjct: 1436 ESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELP 1495
Query: 333 QYYSVISDPISLDDIKKKVKQRKYKNFHKFQEDVMLMLSNYRMYH 377
+YY +I P+ IK++++ KY++ + ++DVML+ N + ++
Sbjct: 1496 EYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFN 1540
Score = 53.1 bits (126), Expect = 2e-06
Identities = 32/142 (22%), Positives = 73/142 (50%), Gaps = 19/142 (13%)
Query: 7 LKEVIKPLVNIIYELKEEN-GLEIHPIFHLLPPKRDYPDYYQIIEHPISLSTVRKRMT-- 63
L + +K +V+ + + K+ + G ++ +F LP +++ P+YY++I P+ +++R+
Sbjct: 1458 LTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNH 1517
Query: 64 QYKNPQEFVNDLARVTWNARTYNTKDSDVYHYAVILDKCVKDTIIPSLKKDFPNIRYPYL 123
+Y++ + D+ + NA+T+N + S +Y +++L F ++R
Sbjct: 1518 KYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSV------------FTSVRQ--- 1562
Query: 124 GPLPDEAPLEGVEIEEPEKQQK 145
+ E EG E EE E+ ++
Sbjct: 1563 -KIEKEDDSEGEESEEEEEGEE 1583
>At3g01770 [K] KOG1474 Transcription initiation factor TFIID subunit BDF1 and
related bromodomain proteins
Length = 601
Score = 58.2 bits (139), Expect = 6e-08
Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 39 KRDYPDYYQIIEHPISLSTVRKRMTQ--YKNPQEFVNDLARVTWNARTYNTKDSDVYHYA 96
K + PDY+ II+HP+ L TV+ ++T Y +P EF D+ NA TYN D++VY +A
Sbjct: 157 KLNIPDYFTIIKHPMDLGTVKSKLTSGTYSSPSEFSADVRLTFRNAMTYNPSDNNVYRFA 216
Query: 97 VILDK 101
L K
Sbjct: 217 DTLSK 221
>SPAC1952.05 [BK] KOG1472 Histone acetyltransferase SAGA/ADA catalytic subunit
PCAF/GCN5 and related proteins
Length = 454
Score = 57.8 bits (138), Expect = 8e-08
Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 39 KRDYPDYYQIIEHPISLSTV--RKRMTQYKNPQEFVNDLARVTWNARTYNTKDSDVYHYA 96
K D PDYY++IEHP+ LST+ R R QY++ +EF+ D + N R+YN ++ Y A
Sbjct: 374 KEDVPDYYEVIEHPMDLSTMEFRLRNNQYESVEEFIRDAKYIFDNCRSYNDSNTTYYKNA 433
Query: 97 VILDK 101
L+K
Sbjct: 434 DRLEK 438
>Hs21071050 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1568
Score = 57.0 bits (136), Expect = 1e-07
Identities = 30/142 (21%), Positives = 71/142 (49%), Gaps = 12/142 (8%)
Query: 7 LKEVIKPLVNIIYELKEENGLEIHPIFHLLPPKRDYPDYYQIIEHPISLSTVRKRMT--Q 64
L + + +++ + K+ +G ++ +F LP +++ P+YY++I P+ +++R+ +
Sbjct: 1379 LTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHK 1438
Query: 65 YKNPQEFVNDLARVTWNARTYNTKDSDVYHYAVILDKCVKDTIIPSLKKDFPNIRYPYLG 124
Y++ + D+ + NA+T+N + S +Y +++L K K++
Sbjct: 1439 YRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEE---------- 1488
Query: 125 PLPDEAPLEGVEIEEPEKQQKA 146
DE+ E E +E E + +A
Sbjct: 1489 ESEDESNEEEEEEDEEESESEA 1510
Score = 52.4 bits (124), Expect = 3e-06
Identities = 34/110 (30%), Positives = 57/110 (50%), Gaps = 7/110 (6%)
Query: 273 AKTPVEKKTHMKRGRPPVIDL-PYEQRIKNVLKAMKKETTPGGKDL----LAAKFERLPD 327
AK VEK +RGRPP L P ++ + A+ +T KD L+ F +LP
Sbjct: 1353 AKEDVEK-AKKRRGRPPAEKLSPNPPKLTKQMNAII-DTVINYKDSSGRQLSEVFIQLPS 1410
Query: 328 EDREPQYYSVISDPISLDDIKKKVKQRKYKNFHKFQEDVMLMLSNYRMYH 377
P+YY +I P+ IK++++ KY++ ++DVML+ N + ++
Sbjct: 1411 RKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFN 1460
>Hs8922081 [K] KOG1083 Putative transcription factor ASH1/LIN-59
Length = 2969
Score = 55.5 bits (132), Expect = 4e-07
Identities = 30/100 (30%), Positives = 49/100 (49%)
Query: 445 KPTVAQIFRLWYTSDGTRWLNCCWYLRPEQTVHRVDRLFYKNEVVKSGQYRDHLVEEIVG 504
K + +I +LW R+ Y RP +T H R FY NE+ + Y +E +VG
Sbjct: 2698 KLDIFRIEKLWKNEKEERFAFGHHYFRPHETHHSPSRRFYHNELFRVPLYEIIPLEAVVG 2757
Query: 505 KCYVCHFTRFQRGDPDVAIEGPLFVCEYRYNETEKVFNKI 544
C V + +G P E +++C+YR +++ +F KI
Sbjct: 2758 TCCVLDLYTYCKGRPKGVKEQDVYICDYRLDKSAHLFYKI 2797
>Hs17449320 [O] KOG2177 Predicted E3 ubiquitin ligase
Length = 1050
Score = 55.1 bits (131), Expect = 5e-07
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 8/83 (9%)
Query: 43 PDYYQIIEHPISLSTVRKRM----TQYKNPQEFVNDLARVTWNARTYNTKDSDVYHYAVI 98
PDYY+II++P+ LST++KR+ + Y P++FV D + N +N DS+V + +
Sbjct: 933 PDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPDSEVANAGIK 992
Query: 99 LDKCVKDTIIPSLKKDFPNIRYP 121
L+ ++ LK +P R+P
Sbjct: 993 LENYFEEL----LKNLYPEKRFP 1011
>Hs14971415 [O] KOG2177 Predicted E3 ubiquitin ligase
Length = 1015
Score = 55.1 bits (131), Expect = 5e-07
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 8/83 (9%)
Query: 43 PDYYQIIEHPISLSTVRKRM----TQYKNPQEFVNDLARVTWNARTYNTKDSDVYHYAVI 98
PDYY+II++P+ LST++KR+ + Y P++FV D + N +N DS+V + +
Sbjct: 898 PDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPDSEVANAGIK 957
Query: 99 LDKCVKDTIIPSLKKDFPNIRYP 121
L+ ++ LK +P R+P
Sbjct: 958 LENYFEEL----LKNLYPEKRFP 976
>YIL126w [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1359
Score = 54.3 bits (129), Expect = 8e-07
Identities = 31/83 (37%), Positives = 49/83 (58%), Gaps = 6/83 (7%)
Query: 17 IIYELKEE-NGLEIHP---IFHLLPPKRDYPDYYQIIEHPISLSTVRKRMTQ--YKNPQE 70
++ E++E+ + ++ HP IF LP KRDYPDY+++IE P+++ + K YK +E
Sbjct: 1258 LVEEMREQLDEVDSHPRTSIFEKLPSKRDYPDYFKVIEKPMAIDIILKNCKNGTYKTLEE 1317
Query: 71 FVNDLARVTWNARTYNTKDSDVY 93
L + NAR YN + S VY
Sbjct: 1318 VRQALQTMFENARFYNEEGSWVY 1340
>Hs4557557 [K] KOG1778 CREB binding protein/P300 and related TAZ Zn-finger
proteins
Length = 2414
Score = 53.9 bits (128), Expect = 1e-06
Identities = 31/108 (28%), Positives = 57/108 (52%), Gaps = 5/108 (4%)
Query: 7 LKEVIKPLVNIIYELKEENGLEIHPIFHLLPPKRDYPDYYQIIEHPISLSTVRKRMT--Q 64
L++ + P + +Y E+ P+ P PDY+ I++ P+ LST+++++ Q
Sbjct: 1054 LRQALMPTLEALYRQDPESLPFRQPVD---PQLLGIPDYFDIVKSPMDLSTIKRKLDTGQ 1110
Query: 65 YKNPQEFVNDLARVTWNARTYNTKDSDVYHYAVILDKCVKDTIIPSLK 112
Y+ P ++V+D+ + NA YN K S VY Y L + + I P ++
Sbjct: 1111 YQEPWQYVDDIWLMFNNAWLYNRKTSRVYKYCSKLSEVFEQEIDPVMQ 1158
>YOR290c [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1703
Score = 53.5 bits (127), Expect = 1e-06
Identities = 30/92 (32%), Positives = 48/92 (51%), Gaps = 2/92 (2%)
Query: 14 LVNIIYELKEENGLEIHPIFHLLPPKRDYPDYYQIIEHPISLSTVRKRM--TQYKNPQEF 71
L + + E G ++ IF P K YPDYY II++P++ + + Y + +E
Sbjct: 1557 LYHFALNYENEAGRKLSDIFLSKPSKALYPDYYMIIKYPVAFDNINTHIETLAYNSLKET 1616
Query: 72 VNDLARVTWNARTYNTKDSDVYHYAVILDKCV 103
+ D + NAR YNT+ S VY ++ L+K V
Sbjct: 1617 LQDFHLIFSNARIYNTEGSVVYEDSLELEKVV 1648
>At1g20670 [R] KOG0955 PHD finger protein BR140/LIN-49
Length = 652
Score = 53.5 bits (127), Expect = 1e-06
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 23/114 (20%)
Query: 41 DYPDYYQIIEHPISLSTVRKRMTQ--YKNPQEFVNDLARVTWNARTYNTKDSDVYHYAVI 98
+ PDY++II++P+ ST+R ++ Y ++F D+ + NA YN+ D+ Y A
Sbjct: 204 ELPDYFEIIKNPMDFSTLRNKLDSGAYSTLEQFERDVFLICTNAMEYNSADTVYYRQARA 263
Query: 99 LDKCVKDTIIPSLKKDFPNIRYPYLGPLPDEAPLEGVEIEEPEKQQKALPKPKI 152
+ + KKDF N+R + + EEP+ QQ+ +PK+
Sbjct: 264 IQELA--------KKDFENLR-------------QDSDDEEPQSQQQQQQQPKV 296
>At1g06230 [K] KOG1474 Transcription initiation factor TFIID subunit BDF1 and
related bromodomain proteins
Length = 766
Score = 53.5 bits (127), Expect = 1e-06
Identities = 26/58 (44%), Positives = 36/58 (61%), Gaps = 2/58 (3%)
Query: 44 DYYQIIEHPISLSTVRKRMTQ--YKNPQEFVNDLARVTWNARTYNTKDSDVYHYAVIL 99
DYY IIEHP+ L T++ + + YK+P+EF D+ NA TYN + DV+ AV L
Sbjct: 454 DYYTIIEHPMDLGTIKSALMKNLYKSPREFAEDVRLTFHNAMTYNPEGQDVHLMAVTL 511
>Hs4758056 [K] KOG1778 CREB binding protein/P300 and related TAZ Zn-finger
proteins
Length = 2442
Score = 52.0 bits (123), Expect = 4e-06
Identities = 30/108 (27%), Positives = 58/108 (52%), Gaps = 5/108 (4%)
Query: 7 LKEVIKPLVNIIYELKEENGLEIHPIFHLLPPKRDYPDYYQIIEHPISLSTVRKRMT--Q 64
L++ + P + +Y E+ P+ P PDY+ I+++P+ LST+++++ Q
Sbjct: 1090 LRQALMPTLEALYRQDPESLPFRQPVD---PQLLGIPDYFDIVKNPMDLSTIKRKLDTGQ 1146
Query: 65 YKNPQEFVNDLARVTWNARTYNTKDSDVYHYAVILDKCVKDTIIPSLK 112
Y+ P ++V+D+ + NA YN K S VY + L + + I P ++
Sbjct: 1147 YQEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVMQ 1194
>CE28069 [K] KOG1778 CREB binding protein/P300 and related TAZ Zn-finger
proteins
Length = 2045
Score = 52.0 bits (123), Expect = 4e-06
Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 43 PDYYQIIEHPISLSTVRKRMT--QYKNPQEFVNDLARVTWNARTYNTKDSDVYHYAVILD 100
PDY++II+ P+ L TV K++ QY+N +F +D+ + NA YN K+S VY Y + L
Sbjct: 890 PDYHEIIKRPMDLETVHKKLYAGQYQNAGQFCDDIWLMLDNAWLYNRKNSKVYKYGLKLS 949
Query: 101 KCVKDTIIPSLK 112
+ + P +K
Sbjct: 950 EMFVSEMDPVMK 961
>CE21117 [K] KOG1778 CREB binding protein/P300 and related TAZ Zn-finger
proteins
Length = 2056
Score = 52.0 bits (123), Expect = 4e-06
Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 43 PDYYQIIEHPISLSTVRKRMT--QYKNPQEFVNDLARVTWNARTYNTKDSDVYHYAVILD 100
PDY++II+ P+ L TV K++ QY+N +F +D+ + NA YN K+S VY Y + L
Sbjct: 901 PDYHEIIKRPMDLETVHKKLYAGQYQNAGQFCDDIWLMLDNAWLYNRKNSKVYKYGLKLS 960
Query: 101 KCVKDTIIPSLK 112
+ + P +K
Sbjct: 961 EMFVSEMDPVMK 972
>At1g73150 [K] KOG1474 Transcription initiation factor TFIID subunit BDF1 and
related bromodomain proteins
Length = 461
Score = 52.0 bits (123), Expect = 4e-06
Identities = 35/119 (29%), Positives = 55/119 (45%), Gaps = 10/119 (8%)
Query: 44 DYYQIIEHPISLSTVRKRMTQ--YKNPQEFVNDLARVTWNARTYNTKDSDVYHYAVILDK 101
DY+ II+ P+ L TV+ R+++ YK+P EF D+ NA YN DVYH A IL
Sbjct: 152 DYHNIIKEPMDLGTVKTRLSKSLYKSPLEFAEDVRLTFNNAMLYNPVGHDVYHMAEILLN 211
Query: 102 CVKDTIIP-------SLKKDFPNIRYPYLGPLPDEA-PLEGVEIEEPEKQQKALPKPKI 152
++ +P ++K P + P+ +E + + P P PK+
Sbjct: 212 LFEEKWVPLETQYELLIRKQQPVRDIDFHAPVSTNTHNVEALPLPAPTPSLSPPPPPKV 270
>7293653 [K] KOG1886 BAH domain proteins
Length = 1262
Score = 51.6 bits (122), Expect = 5e-06
Identities = 34/95 (35%), Positives = 47/95 (48%), Gaps = 3/95 (3%)
Query: 424 VNGKTYKIGDWILLRNANDETKPTVAQIFRLWYT-SDGTRWLNCCWYLRPEQTVHRVDRL 482
V G +I D +LL+ D P VA++ LW DG ++ WY RPE T R
Sbjct: 1097 VEGDIIRIRDCVLLKANEDNELPYVAKVAHLWQNPEDGEMMMSLLWYYRPEHTDQGRQRN 1156
Query: 483 FYKNEVVKSGQYRDH-LVEEIVGKCYVCHFTRFQR 516
+EV S ++RDH V + KCYV F+ + R
Sbjct: 1157 DCPDEVYAS-RHRDHNSVACVEDKCYVLTFSEYCR 1190
>7291080 [K] KOG1778 CREB binding protein/P300 and related TAZ Zn-finger
proteins
Length = 3275
Score = 51.6 bits (122), Expect = 5e-06
Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 5/108 (4%)
Query: 7 LKEVIKPLVNIIYELKEENGLEIHPIFHLLPPKRDYPDYYQIIEHPISLSTVRKRMT--Q 64
L+ + P + +Y + E+ +P+ P PDY++I++ P+ L T+R + +
Sbjct: 1701 LRTALLPTLEKLYRQEPESVPFRYPVD---PQALGIPDYFEIVKKPMDLGTIRTNIQNGK 1757
Query: 65 YKNPQEFVNDLARVTWNARTYNTKDSDVYHYAVILDKCVKDTIIPSLK 112
Y +P E+V+D+ + NA YN K S VY Y L + + I P ++
Sbjct: 1758 YSDPWEYVDDVWLMFDNAWLYNRKTSRVYRYCTKLSEVFEAEIDPVMQ 1805
>Hs21071048 [BK] KOG0386 Chromatin remodeling complex SWI/SNF component SWI2 and
related ATPases (DNA/RNA helicase superfamily)
Length = 1586
Score = 51.2 bits (121), Expect = 7e-06
Identities = 28/124 (22%), Positives = 62/124 (49%), Gaps = 12/124 (9%)
Query: 25 NGLEIHPIFHLLPPKRDYPDYYQIIEHPISLSTVRKRMT--QYKNPQEFVNDLARVTWNA 82
+G ++ +F LP +++ P+YY++I P+ +++R+ +Y++ + D+ + NA
Sbjct: 1415 SGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNA 1474
Query: 83 RTYNTKDSDVYHYAVILDKCVKDTIIPSLKKDFPNIRYPYLGPLPDEAPLEGVEIEEPEK 142
+T+N + S +Y +++L K K++ DE+ E E +E E
Sbjct: 1475 QTFNLEGSQIYEDSIVLQSVFKSARQKIAKEE----------ESEDESNEEEEEEDEEES 1524
Query: 143 QQKA 146
+ +A
Sbjct: 1525 ESEA 1528
>CE13601 [K] KOG1083 Putative transcription factor ASH1/LIN-59
Length = 1312
Score = 51.2 bits (121), Expect = 7e-06
Identities = 28/105 (26%), Positives = 52/105 (48%), Gaps = 2/105 (1%)
Query: 442 DETKPTVAQIFRLWYTSDGTRWLNCCWYLRPEQTVHRVDRLFYKNEVVKSGQYRDHLVEE 501
D + ++ RL+ R++ +Y P +T R+F K EV + Y ++E
Sbjct: 1118 DRKNARIFRVERLFVCPGNNRFVFGSFYAWPHETYADAGRVFSKKEVFATPYYETLPLDE 1177
Query: 502 IVGKCYVCHFTRFQRGDPDVA--IEGPLFVCEYRYNETEKVFNKI 544
++G+C V + +G P V E +F+CE + +T++VF K+
Sbjct: 1178 VIGRCLVLDTATWCKGRPKVPKFKEDDVFLCEMQIGKTQRVFEKV 1222
>CE24921 [R] KOG1632 Uncharacterized PHD Zn-finger protein
Length = 451
Score = 50.8 bits (120), Expect = 9e-06
Identities = 29/118 (24%), Positives = 59/118 (49%), Gaps = 2/118 (1%)
Query: 41 DYPDYYQIIEHPISLSTVRKRM--TQYKNPQEFVNDLARVTWNARTYNTKDSDVYHYAVI 98
++PDY + I+ P+ LST+ K++ T+Y +FVND+ ++ NA+TYN K + V+ A
Sbjct: 320 EFPDYEKFIKKPMDLSTITKKVERTEYLYLSQFVNDVNQMFENAKTYNPKGNAVFKCAET 379
Query: 99 LDKCVKDTIIPSLKKDFPNIRYPYLGPLPDEAPLEGVEIEEPEKQQKALPKPKIPAEQ 156
+ + +I ++ + L + P+ + + Q+ + I ++Q
Sbjct: 380 MQEVFDKKLIDVREQMTARQQMLLLATAQQQDPMSSIRKRVQSESQRTVDSLDIDSDQ 437
>CE15910 [R] KOG1632 Uncharacterized PHD Zn-finger protein
Length = 510
Score = 50.8 bits (120), Expect = 9e-06
Identities = 29/118 (24%), Positives = 59/118 (49%), Gaps = 2/118 (1%)
Query: 41 DYPDYYQIIEHPISLSTVRKRM--TQYKNPQEFVNDLARVTWNARTYNTKDSDVYHYAVI 98
++PDY + I+ P+ LST+ K++ T+Y +FVND+ ++ NA+TYN K + V+ A
Sbjct: 379 EFPDYEKFIKKPMDLSTITKKVERTEYLYLSQFVNDVNQMFENAKTYNPKGNAVFKCAET 438
Query: 99 LDKCVKDTIIPSLKKDFPNIRYPYLGPLPDEAPLEGVEIEEPEKQQKALPKPKIPAEQ 156
+ + +I ++ + L + P+ + + Q+ + I ++Q
Sbjct: 439 MQEVFDKKLIDVREQMTARQQMLLLATAQQQDPMSSIRKRVQSESQRTVDSLDIDSDQ 496
>CE15909 [R] KOG1632 Uncharacterized PHD Zn-finger protein
Length = 405
Score = 50.8 bits (120), Expect = 9e-06
Identities = 29/118 (24%), Positives = 59/118 (49%), Gaps = 2/118 (1%)
Query: 41 DYPDYYQIIEHPISLSTVRKRM--TQYKNPQEFVNDLARVTWNARTYNTKDSDVYHYAVI 98
++PDY + I+ P+ LST+ K++ T+Y +FVND+ ++ NA+TYN K + V+ A
Sbjct: 274 EFPDYEKFIKKPMDLSTITKKVERTEYLYLSQFVNDVNQMFENAKTYNPKGNAVFKCAET 333
Query: 99 LDKCVKDTIIPSLKKDFPNIRYPYLGPLPDEAPLEGVEIEEPEKQQKALPKPKIPAEQ 156
+ + +I ++ + L + P+ + + Q+ + I ++Q
Sbjct: 334 MQEVFDKKLIDVREQMTARQQMLLLATAQQQDPMSSIRKRVQSESQRTVDSLDIDSDQ 391
>At1g32750 [K] KOG0008 Transcription initiation factor TFIID subunit TAF1
Length = 1919
Score = 50.8 bits (120), Expect = 9e-06
Identities = 26/85 (30%), Positives = 52/85 (60%), Gaps = 7/85 (8%)
Query: 4 KVPLKEVIKPLVNIIYELKEENGLEIHPIFHLLPPKRDYPDYYQIIEHPISLSTVRK--R 61
+V L +++ +V+ + +E + L + P+ K++ PDY I+E+P+ LST+R R
Sbjct: 1800 EVGLANILERIVDTLRLKEEVSRLFLKPV-----SKKEAPDYLDIVENPMDLSTIRDKVR 1854
Query: 62 MTQYKNPQEFVNDLARVTWNARTYN 86
+Y+N ++F +D+ ++ +NA YN
Sbjct: 1855 KIEYRNREQFRHDVWQIKYNAHLYN 1879
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.136 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,256,560
Number of Sequences: 60738
Number of extensions: 2493499
Number of successful extensions: 6759
Number of sequences better than 1.0e-05: 35
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 6636
Number of HSP's gapped (non-prelim): 116
length of query: 915
length of database: 30,389,216
effective HSP length: 116
effective length of query: 799
effective length of database: 23,343,608
effective search space: 18651542792
effective search space used: 18651542792
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)