ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactII3403   suspect: LH   J     KOG4708  Translation, ribosomal structure and biogenesis                Mitochondrial ribosomal protein MRP17

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactII3403 1171833  1172219 129  
         (129 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YKL003c [J] KOG4708 Mitochondrial ribosomal protein MRP17             161   2e-40
SPAC343.08c [J] KOG4708 Mitochondrial ribosomal protein MRP17          58   3e-09

>YKL003c [J] KOG4708 Mitochondrial ribosomal protein MRP17
          Length = 131

 Score =  161 bits (408), Expect = 2e-40
 Identities = 82/121 (67%), Positives = 99/121 (81%)

Query: 1   MLYELVSIVRVSNPLAANAEAKELATTIGKLIIQNRGVVRKIVPMGNKLLPKIIKKDQEQ 60
           MLYEL+ +VR++N  A   EAKEL++TIGKLIIQNRGVVR IVPMG + LPKI+KKDQE+
Sbjct: 1   MLYELIGLVRITNSNAPKLEAKELSSTIGKLIIQNRGVVRDIVPMGIRYLPKIMKKDQEK 60

Query: 61  HFQGYHFLMLFDSSAPVQSEILRTLKKDPRVIRSNIIKLSTHKKLDIPTSFERATGNLTS 120
           HF+ YHFLMLFDSSA VQSEILRTLKKDPRVIRS+I+K+   K+LD  +S  R+ G  + 
Sbjct: 61  HFRAYHFLMLFDSSAAVQSEILRTLKKDPRVIRSSIVKVDLDKQLDRASSLHRSLGKKSI 120

Query: 121 L 121
           L
Sbjct: 121 L 121


>SPAC343.08c [J] KOG4708 Mitochondrial ribosomal protein MRP17
          Length = 109

 Score = 58.2 bits (139), Expect = 3e-09
 Identities = 41/104 (39%), Positives = 56/104 (53%), Gaps = 11/104 (10%)

Query: 2   LYELVSIVRVSNPLAANAE-------AKELATTIGKLIIQNRGVVRKIVPMGNKLLPKII 54
           +YEL  I R     AANA        A  +A   G+ I+ N+GVV  +  MG K L K I
Sbjct: 1   MYELFCITRP----AANATRTSSPTLAMNIAKNCGRAILDNKGVVVDVESMGLKELAKPI 56

Query: 55  KKDQEQHFQGYHFLMLFDSSAPVQSEILRTLKKDPRVIRSNIIK 98
           KK  + +  G+ + M F S+  VQSEI R L+ +P V+R  I+K
Sbjct: 57  KKLNQSYSFGHWWSMTFYSNPTVQSEIQRILRLEPSVLRYMIVK 100


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.318    0.134    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,995,214
Number of Sequences: 60738
Number of extensions: 256616
Number of successful extensions: 643
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 641
Number of HSP's gapped (non-prelim): 2
length of query: 129
length of database: 30,389,216
effective HSP length: 94
effective length of query: 35
effective length of database: 24,679,844
effective search space: 863794540
effective search space used: 863794540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)