ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactII3414   suspect: LH   J     KOG3421  Translation, ribosomal structure and biogenesis                60S ribosomal protein L14

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactII3414 1175681 1175490 -64  
         (64 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YKL006w [J] KOG3421 60S ribosomal protein L14                          80   5e-16
YHL001w [J] KOG3421 60S ribosomal protein L14                          80   5e-16

>YKL006w [J] KOG3421 60S ribosomal protein L14
          Length = 138

 Score = 80.1 bits (196), Expect = 5e-16
 Identities = 39/44 (88%), Positives = 43/44 (97%)

Query: 1  MSTDSVVKASNWRLVEVGRVVLVKQGQSAGKLATIVEIIDQKRV 44
          MSTDS+VKASNWRLVEVGRVVL+K+GQSAGKLA IVEIIDQK+V
Sbjct: 1  MSTDSIVKASNWRLVEVGRVVLIKKGQSAGKLAAIVEIIDQKKV 44


>YHL001w [J] KOG3421 60S ribosomal protein L14
          Length = 138

 Score = 80.1 bits (196), Expect = 5e-16
 Identities = 39/44 (88%), Positives = 43/44 (97%)

Query: 1  MSTDSVVKASNWRLVEVGRVVLVKQGQSAGKLATIVEIIDQKRV 44
          MSTDS+VKASNWRLVEVGRVVL+K+GQSAGKLA IVEIIDQK+V
Sbjct: 1  MSTDSIVKASNWRLVEVGRVVLIKKGQSAGKLAAIVEIIDQKKV 44


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.319    0.133    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,457,529
Number of Sequences: 60738
Number of extensions: 96550
Number of successful extensions: 194
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 192
Number of HSP's gapped (non-prelim): 2
length of query: 64
length of database: 30,389,216
effective HSP length: 40
effective length of query: 24
effective length of database: 27,959,696
effective search space: 671032704
effective search space used: 671032704
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)