ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII3425.1 suspect: Pn KR KOG1267 General function prediction only Mitochondrial transcription termination factor, mTERF
r_klactII3425.1 suspect: Pn KR KOG1267 Transcription Mitochondrial transcription termination factor, mTERF
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII3425.1 1177293 1177526 78
(78 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
At1g29060 [KR] KOG1267 Mitochondrial transcription termination f... 40 6e-04
SPAC23C4.13 [U] KOG3385 V-SNARE 33 0.070
At5g08080 [U] KOG0810 SNARE protein Syntaxin 1 and related proteins 28 2.9
At3g03800 [U] KOG0810 SNARE protein Syntaxin 1 and related proteins 28 2.9
7293813 [U] KOG3385 V-SNARE 27 3.8
YBL045c [O] KOG0960 Mitochondrial processing peptidase beta subu... 27 5.0
SPAC6G10.05c [U] KOG1953 Targeting complex (TRAPP) subunit 27 5.0
Hs5031611 [U] KOG3385 V-SNARE 27 5.0
SPBC31E1.04 [U] KOG0811 SNARE protein PEP12/VAM3/Syntaxin 7/Synt... 27 6.6
ECU11g1700 [R] KOG1102 Rab6 GTPase activator GAPCenA and related... 27 6.6
7294587 [P] KOG2083 Na+/K+ symporter 27 6.6
7304355 [K] KOG3862 Transcription factor PAX2/5/8 contains PAX d... 26 8.6
7294088 [U] KOG3202 SNARE protein TLG1/Syntaxin 6 26 8.6
>At1g29060 [KR] KOG1267 Mitochondrial transcription termination factor mTERF
Length = 128
Score = 40.0 bits (92), Expect = 6e-04
Identities = 24/70 (34%), Positives = 40/70 (56%), Gaps = 2/70 (2%)
Query: 11 INQDIGNQAANDSSLIDNIQNSFGQLFLNVKNSSTRLQRSM--NAGNNIWRMVGVSLLCF 68
I Q+IG++A + +D +Q + + VKN+ +L S+ + N+I +V +LL F
Sbjct: 57 IAQEIGSEAKSQRDFLDELQMTLIRAQAGVKNNIRKLNLSIIRSGNNHIMHVVLFALLLF 116
Query: 69 FILYTIYKVF 78
FILY K+F
Sbjct: 117 FILYMWSKMF 126
>SPAC23C4.13 [U] KOG3385 V-SNARE
Length = 117
Score = 33.1 bits (74), Expect = 0.070
Identities = 17/75 (22%), Positives = 37/75 (48%), Gaps = 1/75 (1%)
Query: 1 MANKLSTFRNINQDIGNQAANDSSLIDNIQNSFGQLFLNVKNSSTRLQR-SMNAGNNIWR 59
+ K+ + + + +IG + + + L++++ +SF + + TRL+ S N G +IW
Sbjct: 41 LTGKVKSLKELTMNIGTEITSSTKLMESMNDSFDSTKSLLSGTMTRLKNVSKNGGISIWM 100
Query: 60 MVGVSLLCFFILYTI 74
+ L IL +
Sbjct: 101 WLAFFCLVALILVLV 115
>At5g08080 [U] KOG0810 SNARE protein Syntaxin 1 and related proteins
Length = 307
Score = 27.7 bits (60), Expect = 2.9
Identities = 15/77 (19%), Positives = 36/77 (46%)
Query: 1 MANKLSTFRNINQDIGNQAANDSSLIDNIQNSFGQLFLNVKNSSTRLQRSMNAGNNIWRM 60
+ KL + I D+ ++DNI++ +V++ +T LQR+ + N +
Sbjct: 220 LEKKLLDLQQIFLDMAVLVDAQGEMLDNIESQVSSAVDHVQSGNTALQRAKSLQKNSRKW 279
Query: 61 VGVSLLCFFILYTIYKV 77
+ ++++ I+ + V
Sbjct: 280 MCIAIIILLIVVAVIVV 296
>At3g03800 [U] KOG0810 SNARE protein Syntaxin 1 and related proteins
Length = 306
Score = 27.7 bits (60), Expect = 2.9
Identities = 14/79 (17%), Positives = 36/79 (44%), Gaps = 2/79 (2%)
Query: 1 MANKLSTFRNINQDIGNQAANDSSLIDNIQNSFGQLFLNVKNSSTRLQRSMNA--GNNIW 58
+ KL + + D+ ++DNI+N +V++ + +L +++ + + W
Sbjct: 218 LEKKLLDLQQVFLDMAVLVDAQGEMLDNIENMVSSAVDHVQSGNNQLTKAVKSQKSSRKW 277
Query: 59 RMVGVSLLCFFILYTIYKV 77
+ + +L I+ T+ V
Sbjct: 278 MCIAILILLIIIIITVISV 296
>7293813 [U] KOG3385 V-SNARE
Length = 117
Score = 27.3 bits (59), Expect = 3.8
Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 1 MANKLSTFRNINQDIGNQAANDSSLIDNIQNSFGQLFLNVKNSSTRLQRSMNAGNNIWRM 60
+ K+ +++ DIGN+ L+ I + + + N+ TR+ R G
Sbjct: 37 LKQKIGALKSLTIDIGNEVRYQDKLLRGIDDDMDRTSGFLGNAMTRVVRLAKQGG----- 91
Query: 61 VGVSLLCFFILYTI 74
G +C+ L+ +
Sbjct: 92 -GARQMCYMFLFIL 104
>YBL045c [O] KOG0960 Mitochondrial processing peptidase beta subunit and
related enzymes (insulinase superfamily)
Length = 457
Score = 26.9 bits (58), Expect = 5.0
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 16 GNQAANDSSLIDNIQNSFGQLFLNVKNSSTRLQRSMNAGNNIWR 59
G+ AAN++ + + N + +FL+ +NS+ + + +NI R
Sbjct: 56 GSGAANENPYNNGVSNLWKNIFLSKENSAVAAKEGLALSSNISR 99
>SPAC6G10.05c [U] KOG1953 Targeting complex (TRAPP) subunit
Length = 1210
Score = 26.9 bits (58), Expect = 5.0
Identities = 18/53 (33%), Positives = 28/53 (51%), Gaps = 9/53 (16%)
Query: 29 IQNSFGQLFL-------NVKNSSTRLQRSMNAGNNIWRMVGVSLLCFFILYTI 74
I+N FGQL+L +K+ ST + S G+ +W+ G+SL F + I
Sbjct: 249 IENQFGQLYLLAGRVPNALKHFSTAIALSKATGDFLWQ--GLSLELFTVCLVI 299
>Hs5031611 [U] KOG3385 V-SNARE
Length = 118
Score = 26.9 bits (58), Expect = 5.0
Identities = 16/79 (20%), Positives = 38/79 (47%), Gaps = 2/79 (2%)
Query: 1 MANKLSTFRNINQDIGNQAANDSSLIDNIQNSFGQL--FLNVKNSSTRLQRSMNAGNNIW 58
+ +K++ ++++ +IG++ + L+ + + F FL ++ + +
Sbjct: 39 LRSKVTAIKSLSIEIGHEVKTQNKLLAEMDSQFDSTTGFLGKTMGKLKILSRGSQTKLLC 98
Query: 59 RMVGVSLLCFFILYTIYKV 77
M+ SL FFI+Y I K+
Sbjct: 99 YMMLFSLFVFFIIYWIIKL 117
>SPBC31E1.04 [U] KOG0811 SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17
Length = 317
Score = 26.6 bits (57), Expect = 6.6
Identities = 17/74 (22%), Positives = 29/74 (38%), Gaps = 4/74 (5%)
Query: 5 LSTFRNINQDIGNQAANDSSLIDNIQNSFGQLFLNVKNSSTRLQRSMNAGNNIWRMVGVS 64
++ I +D+ L+ NI+ + G N KN+S +LQ N R
Sbjct: 186 INELNEIFRDLSTIINEQGELVTNIEYNVGNTSTNTKNASRQLQ----IANEHSRKARKR 241
Query: 65 LLCFFILYTIYKVF 78
CF + ++ F
Sbjct: 242 SFCFLKSFAMFSSF 255
>ECU11g1700 [R] KOG1102 Rab6 GTPase activator GAPCenA and related TBC domain
proteins
Length = 320
Score = 26.6 bits (57), Expect = 6.6
Identities = 14/38 (36%), Positives = 23/38 (59%)
Query: 28 NIQNSFGQLFLNVKNSSTRLQRSMNAGNNIWRMVGVSL 65
+I+N + L KNS RL+RS +A I++ + +SL
Sbjct: 43 SIKNEWYDLITRCKNSGERLRRSESARRLIYQGIPLSL 80
>7294587 [P] KOG2083 Na+/K+ symporter
Length = 1171
Score = 26.6 bits (57), Expect = 6.6
Identities = 15/44 (34%), Positives = 22/44 (49%)
Query: 12 NQDIGNQAANDSSLIDNIQNSFGQLFLNVKNSSTRLQRSMNAGN 55
N+ G+ A DSS+ + + S L NV +S+ S AGN
Sbjct: 872 NESSGDLQAVDSSVRNGLSGSIDSLSRNVSQASSTSDLSFIAGN 915
>7304355 [K] KOG3862 Transcription factor PAX2/5/8 contains PAX domain
Length = 844
Score = 26.2 bits (56), Expect = 8.6
Identities = 15/41 (36%), Positives = 21/41 (50%), Gaps = 1/41 (2%)
Query: 17 NQAANDSSLIDNIQNSFGQLFLNVKNSSTRLQRSMNAGNNI 57
N + + SSLI +Q S G LN+ S R +N NN+
Sbjct: 698 NASTHPSSLIP-LQPSGGSSLLNINPSENRSDVELNLSNNV 737
>7294088 [U] KOG3202 SNARE protein TLG1/Syntaxin 6
Length = 232
Score = 26.2 bits (56), Expect = 8.6
Identities = 11/54 (20%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 5 LSTFRNINQDIGNQAANDSSLIDNIQNSFGQLFLNVKNSSTRLQRSMNAGNNIW 58
LS R + +GN+ + ++++DN+ N+ ++ V+ + + + +N ++ W
Sbjct: 161 LSRQRQLATQLGNEVEDQNNILDNLANAMDRVETGVQRETQSIGQ-VNRRDSTW 213
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.324 0.135 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,907,498
Number of Sequences: 60738
Number of extensions: 117168
Number of successful extensions: 497
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 492
Number of HSP's gapped (non-prelim): 13
length of query: 78
length of database: 30,389,216
effective HSP length: 54
effective length of query: 24
effective length of database: 27,109,364
effective search space: 650624736
effective search space used: 650624736
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)