ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII3446 good A KOG0816 RNA processing and modification Protein involved in mRNA turnover
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII3446 1185525 1184812 -238
(238 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YKL009w [A] KOG0816 Protein involved in mRNA turnover 391 e-109
SPBC11G11.03 [A] KOG0816 Protein involved in mRNA turnover 226 3e-59
Hs18490987 [A] KOG0816 Protein involved in mRNA turnover 163 2e-40
7303797 [A] KOG0816 Protein involved in mRNA turnover 127 1e-29
At1g25260 [A] KOG0816 Protein involved in mRNA turnover 121 7e-28
CE04360 [A] KOG0816 Protein involved in mRNA turnover 106 2e-23
Hs17480164 [A] KOG0816 Protein involved in mRNA turnover 68 1e-11
SPCC18.14c [J] KOG0815 60S acidic ribosomal protein P0 64 1e-10
7296522 [J] KOG0815 60S acidic ribosomal protein P0 62 5e-10
YLR340w [J] KOG0815 60S acidic ribosomal protein P0 60 3e-09
Hs4506667 [J] KOG0815 60S acidic ribosomal protein P0 59 5e-09
Hs20536934 [J] KOG0815 60S acidic ribosomal protein P0 58 1e-08
ECU07g0820 [J] KOG0815 60S acidic ribosomal protein P0 54 1e-07
At2g40010 [J] KOG0815 60S acidic ribosomal protein P0 54 2e-07
At3g11250 [J] KOG0815 60S acidic ribosomal protein P0 52 7e-07
At3g09200 [J] KOG0815 60S acidic ribosomal protein P0 52 1e-06
CE09655 [J] KOG0815 60S acidic ribosomal protein P0 50 3e-06
>YKL009w [A] KOG0816 Protein involved in mRNA turnover
Length = 236
Score = 391 bits (1005), Expect = e-109
Identities = 192/236 (81%), Positives = 218/236 (92%)
Query: 1 MPRSKRSKLVTLAQTDKKGRENKERIFDEVREALDSFRYAWVLHLEDVRTPVLQEIRSSW 60
MPRSKRSKLVTLAQTDKKGRENKERIFDEVREALD++RY WVLHL+DVRTPVLQEIR+SW
Sbjct: 1 MPRSKRSKLVTLAQTDKKGRENKERIFDEVREALDTYRYVWVLHLDDVRTPVLQEIRTSW 60
Query: 61 VGSKLIMGKRKVLVKALGEKPEEEYKENLAKLCKHCSGVTGLLFTNEPVDVVEDYFKAYV 120
GSKLIMGKRKVL KALGEK EEEYKENL +L K CSGVTGLLFT+E V+ V++YFK+YV
Sbjct: 61 AGSKLIMGKRKVLQKALGEKREEEYKENLYQLSKLCSGVTGLLFTDEDVNTVKEYFKSYV 120
Query: 121 RADFSRPKSKAPLSFTIPAGIVYSRGGQIPEEEDVPMIHSLEPTLRNKFKIPTKIKNGKI 180
R+D+SRP +KAPL+FTIP GIVYSRGGQIP EEDVPMIHSLEPT+RNKF+IPTKIK GKI
Sbjct: 121 RSDYSRPNTKAPLTFTIPEGIVYSRGGQIPAEEDVPMIHSLEPTMRNKFEIPTKIKAGKI 180
Query: 181 TIESPYLVCEKGKTLDVTQALILKQFGIAAAEFRVKVAAYYDNETSSVEQININMD 236
TI+SPYLVC +G+ LDV QALILKQFGIAA+EF+VKV+AYYDN++S+VE NINM+
Sbjct: 181 TIDSPYLVCTEGEKLDVRQALILKQFGIAASEFKVKVSAYYDNDSSTVESTNINME 236
>SPBC11G11.03 [A] KOG0816 Protein involved in mRNA turnover
Length = 241
Score = 226 bits (575), Expect = 3e-59
Identities = 111/229 (48%), Positives = 158/229 (68%), Gaps = 1/229 (0%)
Query: 1 MPRSKRSKLVTLAQTDKKGRENKERIFDEVREALDSFRYAWVLHLEDVRTPVLQEIRSSW 60
MP+S+RSK++TLAQT+KKG E K +F V+++LDSF Y W+ + ++R L+ IR W
Sbjct: 1 MPKSRRSKVLTLAQTEKKGHEGKAALFSGVQQSLDSFDYMWIFDVTNMRNTYLKRIRDDW 60
Query: 61 VGSKLIMGKRKVLVKALGEKPEEEYKENLAKLCKHCSGVTGLLFTNEPVDVVEDYFKAYV 120
GS++ MGK KV+ KALG PEEE+ EN++KL K G GLLFTN D V YF+++V
Sbjct: 61 KGSRIFMGKTKVMAKALGHTPEEEHAENVSKLTKLLHGAVGLLFTNSKPDEVIGYFESFV 120
Query: 121 RADFSRPKSKAPLSFTIPAGIVYSRGGQIPEEEDVPMIHSLEPTLRNKFKIPTKIKNGKI 180
+ DF+R + AP + IPAG VYSR GQIP E+D+ + H+LEP +R + +PT +KNG +
Sbjct: 121 QNDFARAGAVAPFTHVIPAGPVYSRAGQIPVEDDILLTHTLEPQVR-QLGMPTVLKNGVV 179
Query: 181 TIESPYLVCEKGKTLDVTQALILKQFGIAAAEFRVKVAAYYDNETSSVE 229
T+ + + +C +G+ LD Q +LK FGI AAEF+V + YY + +SVE
Sbjct: 180 TLLADFPLCTEGQQLDSRQTRLLKLFGITAAEFKVGLLGYYSKKGASVE 228
>Hs18490987 [A] KOG0816 Protein involved in mRNA turnover
Length = 239
Score = 163 bits (412), Expect = 2e-40
Identities = 84/231 (36%), Positives = 140/231 (60%), Gaps = 13/231 (5%)
Query: 1 MPRSKRSKLVTLAQTDKKGRENKERIFDEVREALDSFRYAWVLHLEDVRTPVLQEIRSSW 60
MP+SKR K V+L +T KKG E K+ + +E+R+ +D+++Y ++ + ++R L++IR++W
Sbjct: 1 MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60
Query: 61 VGSKLIMGKRKVLVKALGEKPEEEYKENLAKLCKHCSGVTGLLFTNEPVDVVEDYFKAYV 120
S++ GK KV++ ALG P +EYK+NL ++ K G GLLFTN + V ++F Y
Sbjct: 61 KHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKRLRGEVGLLFTNRTKEEVNEWFTKYT 120
Query: 121 RADFSRPKSKAPLSFTIPAGIVYSRGGQIPEEEDVPMIHSLEPTLRNKFKIPTKIKNGKI 180
D++R +KA + ++ G + E P HS+EP LR + +PT +K G +
Sbjct: 121 EMDYARAGNKAAFTVSLDPGPL----------EQFP--HSMEPQLR-QLGLPTALKRGVV 167
Query: 181 TIESPYLVCEKGKTLDVTQALILKQFGIAAAEFRVKVAAYYDNETSSVEQI 231
T+ S Y VC++G L QA +LK FG AEF+V + +D+++ +Q+
Sbjct: 168 TLLSDYEVCKEGDVLTPEQARVLKLFGYEMAEFKVTIKYMWDSQSGRFQQM 218
>7303797 [A] KOG0816 Protein involved in mRNA turnover
Length = 256
Score = 127 bits (320), Expect = 1e-29
Identities = 79/216 (36%), Positives = 123/216 (56%), Gaps = 14/216 (6%)
Query: 1 MPRSKRSKLVTLAQTDKKGRENKERIFDEVREALDSFRYAWVLHLEDVRTPVLQEIRSSW 60
MPRSKR K V+L +TD+KG K+RI D++R + + +V ++++R +L+++R
Sbjct: 1 MPRSKRDKKVSLTKTDRKGLAWKQRIVDDIRFCVGKYPNIFVFQVQNMRNSLLKDLRQEL 60
Query: 61 V-GSKLIMGKRKVLVKALGEKPEEEYKENLAKLCKHCSGVTGLLFTNEPVDVVEDYFKAY 119
S+ I GK +V+ LG EE + L KL K +G GLLFT++ + V ++ + Y
Sbjct: 61 KKNSRFIFGKNRVMQIGLGRTKSEEVEPELHKLSKRLTGQVGLLFTDKSKEEVLEWAENY 120
Query: 120 VRADFSRPKSKAPLSFTIPAGIVYSRGGQIPEEEDVPMIHSLEPTLRNKFKIPTKIKNGK 179
+++R A + T+PAG P E+ HS+EP LR+ +PTK++ G
Sbjct: 121 WAVEYARSGFVATETVTLPAG---------PLED---FAHSMEPHLRS-LGLPTKLEKGI 167
Query: 180 ITIESPYLVCEKGKTLDVTQALILKQFGIAAAEFRV 215
+T+ S Y VCE+GK L QA ILK G A+FR+
Sbjct: 168 VTLYSDYTVCEEGKVLTPEQARILKLVGKPMAKFRL 203
>At1g25260 [A] KOG0816 Protein involved in mRNA turnover
Length = 231
Score = 121 bits (304), Expect = 7e-28
Identities = 75/221 (33%), Positives = 117/221 (52%), Gaps = 24/221 (10%)
Query: 1 MPRSKRSKLVTLAQTDKKGRENKERIFDEVREALDSFRYAWVLHLEDVRTPVLQEIRSSW 60
MP+SKR + VTL++T KKGRE+KE I + +REA++ + +V E++R +E R +
Sbjct: 1 MPKSKRDRPVTLSKTKKKGREHKECIVNGIREAVEKYSSVYVFSFENMRNIKFKEFRQQF 60
Query: 61 -VGSKLIMGKRKVLVKALGEKPEEEYKENLAKLCKHCSGVTGLLFTNEPVDVVEDYFKAY 119
K +G KV+ ALG E+E + + K+ K G TGLL T+ P + VE F AY
Sbjct: 61 RHNGKFFLGSNKVMQVALGRSAEDELRSGIYKVSKLLRGDTGLLVTDMPKEEVESLFNAY 120
Query: 120 VRADFSRPKSKAPLSFTIPAGIVYSRGGQIPEEEDVPM---IHSLEPTLRNKFKIPTKIK 176
+DFSR G I E + P+ H +EP LR K ++P ++
Sbjct: 121 EDSDFSRT-------------------GSIAVETEGPLEQFTHEMEPLLR-KLEMPVRLN 160
Query: 177 NGKITIESPYLVCEKGKTLDVTQALILKQFGIAAAEFRVKV 217
G + + + ++VCE+GK L A IL+ + A F++ +
Sbjct: 161 KGTVELVADFVVCEEGKQLSPKSAHILRLLRMKMATFKLNL 201
>CE04360 [A] KOG0816 Protein involved in mRNA turnover
Length = 220
Score = 106 bits (265), Expect = 2e-23
Identities = 68/225 (30%), Positives = 113/225 (50%), Gaps = 14/225 (6%)
Query: 1 MPRSKRSKLVTLAQTDKKGRENKERIFDEVREALDSFRYAWVLHLEDVRTPVLQEIRSSW 60
M RS+R K V+L + KK ++ K + +EVR ++D ++ ++ + ++R+ IR +
Sbjct: 1 MARSRRDKNVSLTKVKKKTKDTKNNLVNEVRASVDQYKNLFIFTIANMRSTRFIAIRQKY 60
Query: 61 V-GSKLIMGKRKVLVKALGEKPEEEYKENLAKLCKHCSGVTGLLFTNEPVDVVEDYFKAY 119
S+ GK V+ ALG++ +EY L K G GL+FTN VE F
Sbjct: 61 KENSRFFFGKNNVISIALGKQKSDEYANQLHKASAILKGQCGLMFTNMSKKEVEAEFSEA 120
Query: 120 VRADFSRPKSKAPLSFTIPAGIVYSRGGQIPEEEDVPMIHSLEPTLRNKFKIPTKIKNGK 179
D++R A + +P G + S+EP LR K +PTK+ G
Sbjct: 121 SEEDYARVGDVATETVVLPEGPISQ------------FAFSMEPQLR-KLGLPTKLDKGV 167
Query: 180 ITIESPYLVCEKGKTLDVTQALILKQFGIAAAEFRVKVAAYYDNE 224
IT+ + VC++G+ L V QA ILK F + ++FR+ A+++ +
Sbjct: 168 ITLYQQFEVCKEGEPLTVEQAKILKHFEVKMSQFRLIFKAHWNKK 212
>Hs17480164 [A] KOG0816 Protein involved in mRNA turnover
Length = 103
Score = 68.2 bits (165), Expect = 1e-11
Identities = 40/114 (35%), Positives = 61/114 (53%), Gaps = 13/114 (11%)
Query: 76 ALGEKPEEEYKENLAKLCKHCSGVTGLLFTNEPVDVVEDYFKAYVRADFSRPKSKAPLSF 135
ALG+ P +E K+NL + K G GLLFTN + V ++F Y D++R +KA +
Sbjct: 3 ALGQSPPDENKDNLHHVSKRLRGEVGLLFTNRTKEEVNEWFTKYTEMDYARAGNKAAFTA 62
Query: 136 TIPAGIVYSRGGQIPEEEDVPMIHSLEPTLRNKFKIPTKIKNGKITIESPYLVC 189
++ +G + E P HS+EP L + +PT +K G +T+ S Y VC
Sbjct: 63 SLDSGPL----------EQFP--HSMEPQL-TQLALPTALKRGVVTLLSNYEVC 103
>SPCC18.14c [J] KOG0815 60S acidic ribosomal protein P0
Length = 312
Score = 64.3 bits (155), Expect = 1e-10
Identities = 54/211 (25%), Positives = 96/211 (44%), Gaps = 31/211 (14%)
Query: 20 RENKERIFDEVREALDSFRYAWVLHLEDVRTPVLQEIRSSWVGS-KLIMGKRKVLVKAL- 77
+E+K + F+++R + + +V+++++V + + +R G+ +LIMGK ++ +A+
Sbjct: 5 KESKAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMR 64
Query: 78 ---GEKPEEEYKENLAKLCKHCSGVTGLLFTNEPVDVVEDYFKAYVRADFSRPKSKAPLS 134
+ PE L +L G G +FTN + V + A V A +RP + APL
Sbjct: 65 GIINDMPE------LERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLD 118
Query: 135 FTIPAGIVYSRGGQIPEEEDVPMIHSLEPTLRNKFK---IPTKIKNGKITIESPYLVCEK 191
+PAG +EP + F+ IPTKI G I I S + K
Sbjct: 119 VFVPAGNT-----------------GMEPGKTSFFQALGIPTKITRGTIEITSDVHLVSK 161
Query: 192 GKTLDVTQALILKQFGIAAAEFRVKVAAYYD 222
+ ++A +L I+ + + V YD
Sbjct: 162 DAKVGPSEATLLNMLNISPFTYGMDVLTIYD 192
>7296522 [J] KOG0815 60S acidic ribosomal protein P0
Length = 317
Score = 62.4 bits (150), Expect = 5e-10
Identities = 60/210 (28%), Positives = 96/210 (45%), Gaps = 23/210 (10%)
Query: 20 RENKE----RIFDEVREALDSFRYAWVLHLEDVRTPVLQEIRSSWVG-SKLIMGKRKVLV 74
RENK + F +V E D F +++ ++V + +Q IR+S G + ++MGK ++
Sbjct: 3 RENKAAWKAQYFIKVVELFDEFPKCFIVGADNVGSKQMQNIRTSLRGLAVVLMGKNTMMR 62
Query: 75 KALGEKPEEEYKENLAKLCKHCSGVTGLLFTNEPVDVVED-YFKAYVRADFSRPKSKAPL 133
KA+ + E L KL H G G +FT + V D ++ VRA +RP + APL
Sbjct: 63 KAI--RGHLENNPQLEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRAP-ARPGAIAPL 119
Query: 134 SFTIPAGIVYSRGGQIPEEEDVPMIHSLEPTLRNKFKIPTKIKNGKITIESPYLVCEKGK 193
IPA G PE+ + IPTKI G I I + + + G
Sbjct: 120 HVIIPA----QNTGLGPEKT----------SFFQALSIPTKISKGTIEIINDVPILKPGD 165
Query: 194 TLDVTQALILKQFGIAAAEFRVKVAAYYDN 223
+ ++A +L I+ + + V YD+
Sbjct: 166 KVGASEATLLNMLNISPFSYGLIVNQVYDS 195
>YLR340w [J] KOG0815 60S acidic ribosomal protein P0
Length = 312
Score = 60.1 bits (144), Expect = 3e-09
Identities = 54/212 (25%), Positives = 96/212 (44%), Gaps = 31/212 (14%)
Query: 20 RENKERIFDEVREALDSFRYAWVLHLEDVRTPVLQEIRSSWVG-SKLIMGKRKVLVKA-- 76
RE K F ++RE L+ ++ +V+ +++V + + E+R G + ++MGK ++ +A
Sbjct: 5 REKKAEYFAKLREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIR 64
Query: 77 --LGEKPEEEYKENLAKLCKHCSGVTGLLFTNEPVDVVEDYFKAYVRADFSRPKSKAPLS 134
L + P+ E KL G G +FTNEP+ +++ + A +R + AP
Sbjct: 65 GFLSDLPDFE------KLLPFVKGNVGFVFTNEPLTEIKNVIVSNRVAAPARAGAVAPED 118
Query: 135 FTIPAGIVYSRGGQIPEEEDVPMIHSLEPTLRNKFK---IPTKIKNGKITIESPYLVCEK 191
+ A + +EP + F+ +PTKI G I I S V +
Sbjct: 119 IWVRA-----------------VNTGMEPGKTSFFQALGVPTKIARGTIEIVSDVKVVDA 161
Query: 192 GKTLDVTQALILKQFGIAAAEFRVKVAAYYDN 223
G + ++A +L I+ F + V YDN
Sbjct: 162 GNKVGQSEASLLNLLNISPFTFGLTVVQVYDN 193
>Hs4506667 [J] KOG0815 60S acidic ribosomal protein P0
Length = 317
Score = 59.3 bits (142), Expect = 5e-09
Identities = 51/202 (25%), Positives = 87/202 (42%), Gaps = 17/202 (8%)
Query: 23 KERIFDEVREALDSFRYAWVLHLEDVRTPVLQEIRSSWVGSKLI-MGKRKVLVKALGEKP 81
K F ++ + LD + +++ ++V + +Q+IR S G ++ MGK ++ KA+ +
Sbjct: 10 KSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAI--RG 67
Query: 82 EEEYKENLAKLCKHCSGVTGLLFTNEPVDVVEDYFKAYVRADFSRPKSKAPLSFTIPAGI 141
E L KL H G G +FT E + + D A +R + AP T+PA
Sbjct: 68 HLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPA-- 125
Query: 142 VYSRGGQIPEEEDVPMIHSLEPTLRNKFKIPTKIKNGKITIESPYLVCEKGKTLDVTQAL 201
G PE + + I TKI G I I S + + G + ++A
Sbjct: 126 --QNTGLGPE----------KTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEAT 173
Query: 202 ILKQFGIAAAEFRVKVAAYYDN 223
+L I+ F + + +DN
Sbjct: 174 LLNMLNISPFSFGLVIQQVFDN 195
>Hs20536934 [J] KOG0815 60S acidic ribosomal protein P0
Length = 317
Score = 58.2 bits (139), Expect = 1e-08
Identities = 51/202 (25%), Positives = 87/202 (42%), Gaps = 17/202 (8%)
Query: 23 KERIFDEVREALDSFRYAWVLHLEDVRTPVLQEIRSSWVGSKLI-MGKRKVLVKALGEKP 81
K F ++ + LD + +++ ++V + +Q+IR S G ++ MGK ++ KA+ +
Sbjct: 10 KSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKVVVLMGKNTMMRKAI--RG 67
Query: 82 EEEYKENLAKLCKHCSGVTGLLFTNEPVDVVEDYFKAYVRADFSRPKSKAPLSFTIPAGI 141
E L KL H G G +FT E + + D A +R + AP T+PA
Sbjct: 68 HLENNPALEKLLPHIWGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPA-- 125
Query: 142 VYSRGGQIPEEEDVPMIHSLEPTLRNKFKIPTKIKNGKITIESPYLVCEKGKTLDVTQAL 201
G PE + + I TKI G I I S + + G + ++A
Sbjct: 126 --QNTGLGPE----------KTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEAT 173
Query: 202 ILKQFGIAAAEFRVKVAAYYDN 223
+L I+ F + + +DN
Sbjct: 174 LLNMLNISPFSFGLVIQQVFDN 195
>ECU07g0820 [J] KOG0815 60S acidic ribosomal protein P0
Length = 290
Score = 54.3 bits (129), Expect = 1e-07
Identities = 56/225 (24%), Positives = 97/225 (42%), Gaps = 29/225 (12%)
Query: 5 KRSKLVTLAQTDKKGRENKERIFDEVREALDSFRYAWVLHLEDVRTPVLQEIRSSWVGS- 63
KR K T K +E KE ++ R+ +++ ++ +E+V + L++I+ W G+
Sbjct: 16 KREKFFHPGMTRKDAKERKELTYERARKLFETYSRFALVKIENVVSTQLKDIKRQWGGNA 75
Query: 64 KLIMGKRKVLVKALGE--KPEEEYKENLAKLCKHCSGVTGLLFTNEPVDVVEDYFKAYVR 121
+L+MGK + +A+ + KPE SGV L+ DV +FK R
Sbjct: 76 ELLMGKNSAIRRAIADLGKPE-------------LSGVYDLV----KGDVCFVFFKGNAR 118
Query: 122 ADFSRPKSKAPLSFTIPAGIVYSRGGQIPEEEDVPMIHSLEPTLRNKFK---IPTKIKNG 178
D + + G V R + I + P + F+ I TKI G
Sbjct: 119 -DIKKAIDENVREACAKVGNVAQRDVWVES-----CITGMTPDKTSYFQALGIATKITKG 172
Query: 179 KITIESPYLVCEKGKTLDVTQALILKQFGIAAAEFRVKVAAYYDN 223
K+ I SPY V +G + +QA +L I +++ + Y++
Sbjct: 173 KVEIISPYKVLSEGDKVGPSQANLLGMLNIKPFCYKMTMHQIYED 217
>At2g40010 [J] KOG0815 60S acidic ribosomal protein P0
Length = 317
Score = 53.9 bits (128), Expect = 2e-07
Identities = 51/226 (22%), Positives = 99/226 (43%), Gaps = 23/226 (10%)
Query: 17 KKGRENKERIFD-EVREALDSFRYAWVLHLEDVRTPVLQEIRSSWVG-SKLIMGKRKVLV 74
K + K+ ++D ++ + L+ + V+ ++V + LQ IR G S ++MGK ++
Sbjct: 4 KATKAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMK 63
Query: 75 KALGEKPEEEYKENLAKLCKHCSGVTGLLFTNEPVDVVEDYFKAYVRADFSRPKSKAPLS 134
+++ ++ + L G GL+FT + V + Y +R AP+
Sbjct: 64 RSVRIHADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPID 123
Query: 135 FTIPAGIVYSRGGQIPEEEDVPMIHSLEPTLRNKFK---IPTKIKNGKITIESPYLVCEK 191
+ G L+P+ + F+ IPTKI G + I +P + +K
Sbjct: 124 VVVQPGNT-----------------GLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKK 166
Query: 192 GKTLDVTQALILKQFGIAAAEFRVKVAAYYDN-ETSSVEQININMD 236
G + ++A +L + GI + + V + YDN + E +N+ D
Sbjct: 167 GDKVGSSEAALLAKLGIRPFSYGLVVESVYDNGSVFNPEVLNLTED 212
>At3g11250 [J] KOG0815 60S acidic ribosomal protein P0
Length = 323
Score = 52.0 bits (123), Expect = 7e-07
Identities = 48/212 (22%), Positives = 91/212 (42%), Gaps = 22/212 (10%)
Query: 17 KKGRENKERIFD-EVREALDSFRYAWVLHLEDVRTPVLQEIRSSWVG-SKLIMGKRKVLV 74
K + K+ +D ++ + +D + V+ ++V + LQ IR G S ++MGK ++
Sbjct: 3 KATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMK 62
Query: 75 KALGEKPEEEYKENLAKLCKHCSGVTGLLFTNEPVDVVEDYFKAYVRADFSRPKSKAPLS 134
+++ E + L G GL+FT + V + Y +R AP+
Sbjct: 63 RSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPID 122
Query: 135 FTIPAGIVYSRGGQIPEEEDVPMIHSLEPTLRNKFK---IPTKIKNGKITIESPYLVCEK 191
+ G L+P+ + F+ IPTKI G + I +P + ++
Sbjct: 123 VVVQPGNT-----------------GLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQ 165
Query: 192 GKTLDVTQALILKQFGIAAAEFRVKVAAYYDN 223
G + ++A +L + GI + + V + YDN
Sbjct: 166 GDKVGSSEAALLAKLGIRPFSYGLVVQSVYDN 197
>At3g09200 [J] KOG0815 60S acidic ribosomal protein P0
Length = 320
Score = 51.6 bits (122), Expect = 1e-06
Identities = 48/212 (22%), Positives = 91/212 (42%), Gaps = 22/212 (10%)
Query: 17 KKGRENKERIFD-EVREALDSFRYAWVLHLEDVRTPVLQEIRSSWVG-SKLIMGKRKVLV 74
K + K+ +D ++ + +D + V+ ++V + LQ IR G S ++MGK ++
Sbjct: 3 KATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMK 62
Query: 75 KALGEKPEEEYKENLAKLCKHCSGVTGLLFTNEPVDVVEDYFKAYVRADFSRPKSKAPLS 134
+++ E + L G GL+FT + V + Y +R AP+
Sbjct: 63 RSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPID 122
Query: 135 FTIPAGIVYSRGGQIPEEEDVPMIHSLEPTLRNKFK---IPTKIKNGKITIESPYLVCEK 191
+ G L+P+ + F+ IPTKI G + I +P + ++
Sbjct: 123 VVVQPGNT-----------------GLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQ 165
Query: 192 GKTLDVTQALILKQFGIAAAEFRVKVAAYYDN 223
G + ++A +L + GI + + V + YDN
Sbjct: 166 GDKVGSSEAALLAKLGIRPFSYGLVVQSVYDN 197
>CE09655 [J] KOG0815 60S acidic ribosomal protein P0
Length = 312
Score = 50.1 bits (118), Expect = 3e-06
Identities = 46/208 (22%), Positives = 90/208 (43%), Gaps = 25/208 (12%)
Query: 23 KERIFDEVREALDSFRYAWVLHLEDVRTPVLQEIRSSWVG-SKLIMGKRKVLVKAL---- 77
K F ++ E + + ++ +++V + +QEIR + G ++++MGK ++ KAL
Sbjct: 10 KANYFTKLVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTMIRKALRGHL 69
Query: 78 GEKPEEEYKENLAKLCKHCSGVTGLLFTNEPVDVVEDYFKAYVRADFSRPKSKAPLSFTI 137
G+ P +L KL H G +FT E + + + ++ + AP +
Sbjct: 70 GKNP------SLEKLLPHIVENVGFVFTKEDLGEIRSKLLENRKGAPAKAGAIAPCDVKL 123
Query: 138 PAGIVYSRGGQIPEEEDVPMIHSLEPTLRNKFKIPTKIKNGKITIESPYLVCEKGKTLDV 197
P G PE+ + +IPTKI G I I + + ++G +
Sbjct: 124 PP----QNTGMGPEKT----------SFFQALQIPTKIARGTIEILNDVHLIKEGDKVGA 169
Query: 198 TQALILKQFGIAAAEFRVKVAAYYDNET 225
+++ +L G+ + + V YD+ T
Sbjct: 170 SESALLNMLGVTPFSYGLVVRQVYDDGT 197
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.134 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,333,818
Number of Sequences: 60738
Number of extensions: 639963
Number of successful extensions: 1681
Number of sequences better than 1.0e-05: 17
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1662
Number of HSP's gapped (non-prelim): 17
length of query: 238
length of database: 30,389,216
effective HSP length: 103
effective length of query: 135
effective length of database: 24,133,202
effective search space: 3257982270
effective search space used: 3257982270
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)