ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactII3474   suspect: LH   L     KOG2401  Replication, recombination and repair                          Predicted MutS-related protein involved in mismatch repair

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactII3474 1198082 1196691 -464 
         (464 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YKL090w [L] KOG2401 Predicted MutS-related protein involved in m...   198   1e-50

>YKL090w [L] KOG2401 Predicted MutS-related protein involved in mismatch
           repair
          Length = 443

 Score =  198 bits (504), Expect = 1e-50
 Identities = 133/476 (27%), Positives = 234/476 (48%), Gaps = 57/476 (11%)

Query: 2   DQHVESLG---QLFPDLPEVKLRNALTSSNNDINLACSILLSEVNSQPKNQQTDHVRELM 58
           D H   L     +FP + + KL+  L  +NND++L   +LL E  +  K+   + + +L 
Sbjct: 7   DDHESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKE--NDDKSTVDNELHQLY 64

Query: 59  SMFPNLSKDSIKKALDTTNGDVDEAIQDLLCVNTLSLEERNSHQSENNHQKGNSLPKDSD 118
            MFP L    IK         V+  I DLL   TL   + N   S ++ ++     K ++
Sbjct: 65  DMFPQLDCSVIKDQFVINEKSVESTISDLLNYETLQKLKDNQANSPDSVKRNE---KKNN 121

Query: 119 WSKLNDNLEIVMKYGDVPRHIAQDLYMEQRLDPIRALIQLIFTYEEQVSKYHLSQLRKPV 178
           W   ND++E ++K+ D P++IAQ+   E   D ++A+I++I  Y      Y     +K V
Sbjct: 122 WESTNDHIESIIKFTDAPKNIAQEYLAENGFDTVKAIIKIILDY------YDKRDFKKDV 175

Query: 179 ----IKPTP-------RVQSQNGFTHQRSRNEKPSPKPDVGIPSKPTKFFQERTYQYDPC 227
               +K +P       RVQS  G  H   +      K    +  +  K  + R+Y++   
Sbjct: 176 DTFKVKRSPNTTVRGGRVQSSTGLAHVLKKG-----KESANVAQESLK--RPRSYKHSLD 228

Query: 228 NEQALALDDLIQSDKKLRAINHKFLERALEYFNGEVAPTVSLAILITERKYAKYTGQYTL 287
           + Q + L++L+  ++ L+AINH+FL++ L++++G+V   ++++ L+ E            
Sbjct: 229 SPQMVELNELVADNRDLKAINHEFLQKCLQFYDGDVVKVLNISSLLIE------------ 276

Query: 288 SLDGKNANGA-QFKYQITPLRAKTVSPSVPTFTAAVIPGTKVKQRTVTTSSLRINESQFR 346
             D KN      F    T          +P F+       ++ +R    ++ ++      
Sbjct: 277 --DDKNITKTWNFDEGFTLTSRDNCKQHLPKFSTP-----QISRRNEVGNTYKLPLHDKE 329

Query: 347 NPEHYKTGLKMIENIMTSPKLDFHGWFPEDAHLVTSECLKRWWKQELSCRELNNQRLNQI 406
            PE     + +I N+  + +LDFHG+ P +A       L +WW +E++ RELN+  +N  
Sbjct: 330 TPEG---AVPVINNLFQTYRLDFHGFLPSEAVSTLKLALNKWWSKEVAERELNSHNINSY 386

Query: 407 --QVMNVPNITIITGRGLHSVGGIPKVRKRIQKFLTENNYNYIEESSLFVVNGKKR 460
             +V  V  + ++TGRG+HS+GGI KVR +++ FL +N+Y + EESS F + GKK+
Sbjct: 387 GSKVQFVSPLIVVTGRGIHSIGGISKVRLQVKSFLEKNHYIFWEESSYFRIEGKKK 442


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.315    0.132    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,753,619
Number of Sequences: 60738
Number of extensions: 1291343
Number of successful extensions: 4153
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4146
Number of HSP's gapped (non-prelim): 1
length of query: 464
length of database: 30,389,216
effective HSP length: 110
effective length of query: 354
effective length of database: 23,708,036
effective search space: 8392644744
effective search space used: 8392644744
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)