ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII3495 good DL KOG1969 Cell cycle control, cell division, chromosome partitioning DNA replication checkpoint protein CHL12/CTF18
r_klactII3495 good DL KOG1969 Replication, recombination and repair DNA replication checkpoint protein CHL12/CTF18
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII3495 1203608 1201320 -763
(763 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YMR078c [DL] KOG1969 DNA replication checkpoint protein CHL12/CTF18 637 0.0
SPBC902.02c [DL] KOG1969 DNA replication checkpoint protein CHL1... 248 3e-65
Hs14777079 [DL] KOG1969 DNA replication checkpoint protein CHL12... 186 1e-46
At1g04730 [DL] KOG1969 DNA replication checkpoint protein CHL12/... 157 6e-38
CE06149 [DL] KOG1969 DNA replication checkpoint protein CHL12/CTF18 157 8e-38
7295770 [DL] KOG1969 DNA replication checkpoint protein CHL12/CTF18 152 1e-36
At1g77620 [L] KOG1968 Replication factor C subunit RFC1 (large s... 96 2e-19
YOR217w [L] KOG1968 Replication factor C subunit RFC1 (large sub... 92 4e-18
Hs15011931 [L] KOG1968 Replication factor C subunit RFC1 (large ... 84 8e-16
7296805 [L] KOG1968 Replication factor C subunit RFC1 (large sub... 83 1e-15
SPBC23E6.07c [L] KOG1968 Replication factor C subunit RFC1 (larg... 83 2e-15
CE20613 [L] KOG1968 Replication factor C subunit RFC1 (large sub... 81 5e-15
ECU05g1530 [L] KOG1968 Replication factor C subunit RFC1 (large ... 81 7e-15
Hs19923605 [L] KOG1968 Replication factor C subunit RFC1 (large ... 71 5e-12
7292439 [L] KOG0991 Replication factor C subunit RFC2 67 1e-10
Hs4506491 [L] KOG0989 Replication factor C subunit RFC4 60 2e-08
7293390 [L] KOG0989 Replication factor C subunit RFC4 59 3e-08
CE22399 [L] KOG1968 Replication factor C subunit RFC1 (large sub... 52 3e-06
>YMR078c [DL] KOG1969 DNA replication checkpoint protein CHL12/CTF18
Length = 741
Score = 637 bits (1644), Expect = 0.0
Identities = 336/752 (44%), Positives = 479/752 (63%), Gaps = 66/752 (8%)
Query: 33 DPNVKTFVSSNGSVIPLRKKRKDPAQI-----------DTSWSADEAYGININALLDRIE 81
+ ++ FVSS G + L+KK PA++ DT W +D+ YGININ LLD+IE
Sbjct: 35 EEDIHAFVSSTGETVQLKKK---PAKLATGNISLYTNPDTVWRSDDTYGININYLLDKIE 91
Query: 82 NDVGDSTPTNNLQPQXXXXXXXXXXRLSSGNTLWTEKWRPHKFLDLVGNERLNRRVLFWL 141
D T P ++ S +TLW EKWRP KFLDLVGNE+ NRR+L WL
Sbjct: 92 ASGDDRTNAQKTSP--------ITGKIGS-DTLWVEKWRPKKFLDLVGNEKTNRRMLGWL 142
Query: 142 RQWSPLVFDEELPELTTFKKHSNPENDASDEYADPLKRPMKRILLIHGPPGIGKTSVAHV 201
RQW+P VF E+LP+L T E + SD DPLKRP K+ILL+HGPPGIGKTSVAHV
Sbjct: 143 RQWTPAVFKEQLPKLPT-------EKEVSDMELDPLKRPPKKILLLHGPPGIGKTSVAHV 195
Query: 202 VAKQAGYSVMEINASDERAGDRVRHKVQNALFNHTFNDKPVCLIADEIDGSVENGFIKVL 261
+AKQ+G+SV EINASDERAG V+ K+ N LFNHTF+ PVCL+ADEIDGS+E+GFI++L
Sbjct: 196 IAKQSGFSVSEINASDERAGPMVKEKIYNLLFNHTFDTNPVCLVADEIDGSIESGFIRIL 255
Query: 262 LDIIKSDSKATHDLITGRTGKDHHFKSSARLQXXXXXXXXLLTRPIIAVCNNVYANALEK 321
+DI++SD KAT+ L+ G+ K + R + LLTRPII +CNN+YA +LEK
Sbjct: 256 VDIMQSDIKATNKLLYGQPDKKDKKRKKKRSK--------LLTRPIICICNNLYAPSLEK 307
Query: 322 LRPHSEIIHFQKPSENALMERLEYVCKKEKVHVSKTLLKELAVLSQGDVRNSLNNLQFMT 381
L+P EII ++PS+ L+ERL +C KE +++ + +L L+QGDVRN +NNLQF+
Sbjct: 308 LKPFCEIIAVKRPSDTTLLERLNLICHKENMNIPIKAINDLIDLAQGDVRNCINNLQFLA 367
Query: 382 KNGFDKDKLVTNG---SDAEWTDDKRKDIGITWFKICNSIFKRDPYLDVKLQLKNLLRDV 438
N +D ++ + W KD I+WFKI N +F++DP+ D+K Q LL V
Sbjct: 368 SNVDSRDSSASDKPACAKNTWASSN-KDSPISWFKIVNQLFRKDPHRDIKEQFYELLNQV 426
Query: 439 ETSGNYERIIEGCFTLFPEVNYSDHGVTKPGRISDWLFFNDRMFQSLFEHNGELLRYCAF 498
E +GN +RI++GCF +FP V YSD+G+ KP ISDWLFF+D M+QS++ HNGELLRY A
Sbjct: 427 ELNGNSDRILQGCFNIFPYVKYSDNGIRKPANISDWLFFHDLMYQSMYAHNGELLRYSAL 486
Query: 499 TPLEFFVMFGDIANKDELKVKTNSFEIKERERASLNLLDVINSKCSITSMI---YANKQT 555
PL FF FGDIANKD++++K + +E +E +RA+ +++ +I S+ S + + ++++
Sbjct: 487 VPLVFFQTFGDIANKDDIRMKNSEYEQRELKRANSDIVSLIMRHISVQSPLMASFTDRKS 546
Query: 556 LLMEILPMVDEILSTDLSRVRDAQIRQRSLDLVIPLFHDFQLQIQQSTNP--DTRNALVV 613
L+ EILP +D ++S+D +++R+ +++Q ++ ++ L FQL + Q+ + D R L +
Sbjct: 547 LIFEILPYLDSMISSDFNKIRNLKLKQAIMEELVQLLKSFQLNLIQNRSEGFDVRGGLTI 606
Query: 614 DPPLDQIVLLDGKKLREVITKRPIALKFSLAKLEEEKIRKRALDRVMRDKETNENNRKRQ 673
DPP+D++VLL+ K + EV KR L LAK+EE + +KR +D+V D+ ++ ++
Sbjct: 607 DPPIDEVVLLNPKHINEVQHKRANNLSSLLAKIEENRAKKRHIDQVTEDRLQSQEMHSKK 666
Query: 674 KMEGTGSRS--VDFFKDQYNSIKTTAENASLVAPPTKKTRSAFSFTRESTPTTXXXXXXX 731
G S S +DFFK+QY +K T E T+KT +
Sbjct: 667 VKTGLNSSSSTIDFFKNQYGLLKQTQE-----LEETQKTIGS------------DETNQA 709
Query: 732 XXXXXXMRIWVKYKEGFSNAVRKNISWSQLWE 763
++IWVKY EGFSNAVRKN++W+ LWE
Sbjct: 710 DDCNQTVKIWVKYNEGFSNAVRKNVTWNNLWE 741
>SPBC902.02c [DL] KOG1969 DNA replication checkpoint protein CHL12/CTF18
Length = 960
Score = 248 bits (632), Expect = 3e-65
Identities = 182/662 (27%), Positives = 315/662 (47%), Gaps = 70/662 (10%)
Query: 114 LWTEKWRPHKFLDLVGNERLNRRVLFWLRQWSPLVFDEE-LPELTTFKKHSNPENDASDE 172
LW + +RP F DL+G+ER++R + W++ W P VF + L + + + N SD
Sbjct: 352 LWVDTYRPQLFRDLLGDERVHRAAMHWIKAWDPCVFGKSRLQPSKSMRFNPRFTNITSDS 411
Query: 173 YADPLKRPMKRILLIHGPPGIGKTSVAHVVAKQAGYSVMEINASDERAGDRVRHKVQNAL 232
RP KRI+++ G G GKT++AHV+A QAGY V+EINASD+R V KV +A+
Sbjct: 412 -----DRPDKRIMMLTGLAGAGKTTLAHVIAHQAGYKVLEINASDDRTAHTVHEKVSSAI 466
Query: 233 FNHT-FNDKPVCLIADEIDGSVENGFIKVLLDIIKSDSKATHDLITGRTGKDHHFKSSAR 291
NH+ + +P C+I DEIDG + F++ LL +++SD KAT G + K FK
Sbjct: 467 SNHSALSSQPTCVIVDEIDGG-DPAFVRALLSLLESDEKATEYSQAGNSKKKKKFKK--- 522
Query: 292 LQXXXXXXXXLLTRPIIAVCNNVYANALEKLRPHSEIIHFQKPSENALMERLEYVCKKEK 351
L RPII +CN++Y AL LRP+++II+F+ P + +L+ RL +C+ E
Sbjct: 523 -----------LCRPIICICNDLYTPALRPLRPYAQIIYFRPPPQASLVGRLRTICRNEN 571
Query: 352 VHVSKTLLKELAVLSQGDVRNSLNNLQFMTKNGFDKD----KLVTNGSDAEWTDDKRKDI 407
+ V L L + D+R+ +N+LQ ++ N D KL+ S++ T + +
Sbjct: 572 IAVDSRSLTLLTDIYNSDIRSCINSLQLLSLNNKRIDSETIKLLQPKSNSFSTSSLIQSL 631
Query: 408 GITW-FKICNSIFKRDPYLDVKLQLKNLLRDVETSGNYERIIEGCFTLFPEVNYSDHGVT 466
+ K +I P L LL ++ + + E ++ CF + ++ ++D ++
Sbjct: 632 FLQLDNKQIRAIEASQPTYS---HLDALLARIDGANDSESVLMNCFHTYLDLPFTDSLLS 688
Query: 467 KPGRISDWLFFNDRMFQSLFEHNGELLRYCAFTPLEFFVMFGDIANKDELKVKTNSFEIK 526
KP S+WL+F D++ ++ N EL RY ++ + F ++ + E
Sbjct: 689 KPALTSEWLYFFDQLHSQCYKGNYELWRYIPYSIIHFHYLYATPEKCRLPHPPRSDLEAL 748
Query: 527 ERERASLNLLDVINSKCSITSMIYANKQTLLMEILPMVDEILSTDLSRVRDAQIRQ---R 583
+ R +LD S + ++++L+E++ + ++ L + D+ R
Sbjct: 749 KLYRTRKEILDSFISTLNAYENQMHGERSILLELIRTILITINPTLKQKEDSMPRSALPS 808
Query: 584 SLDLVIPLFHDFQLQIQQSTNPDTRNALVVDPPLDQIVLLDGKKLREVITKRPIALKFSL 643
++ I + + + L+ QQ D ++PPLD E++ P +
Sbjct: 809 KIEHAINILNHYNLRFQQLPVGDGNYVYRLEPPLD-----------ELVWDAPTSSYSVR 857
Query: 644 AKLEEEKIRKRALD---RVMRDKETNEN-NRKRQKMEGTGSRSVDFFKDQYNSIKTTAEN 699
L +E ++KR D + + D T+ N +RKR+ + DFF + K+ A
Sbjct: 858 QMLSQELLKKRLADIKKQTLTDNPTSSNSSRKRKDFNSGKAIKRDFFGRIISEPKSEAVT 917
Query: 700 ASLVAPPTKKTRSAFSFTRESTPTTXXXXXXXXXXXXXMRIWVKYKEGFSNAVRKNISWS 759
++ A T + I +K+ +GFSNAVRK IS +
Sbjct: 918 SNNAALNTGDHPVSIKHA----------------------INIKFHDGFSNAVRKPISLN 955
Query: 760 QL 761
++
Sbjct: 956 EI 957
>Hs14777079 [DL] KOG1969 DNA replication checkpoint protein CHL12/CTF18
Length = 1003
Score = 186 bits (472), Expect = 1e-46
Identities = 171/712 (24%), Positives = 313/712 (43%), Gaps = 82/712 (11%)
Query: 109 SSGNTLWTEKWRPHKFLDLVGNERLNRRVLFWLRQWSPLVFDEELP-------------- 154
+S + LW +++ P + +L+ ++ NR +L WL+ W +VF E P
Sbjct: 304 ASSHCLWVDEFAPRHYTELLSDDFTNRCLLKWLKLWDLVVFGHERPSRKPRPSVEPARVS 363
Query: 155 -ELTT---FKKHSNPENDASDEYADPLKRPMKRILLIHGPPGIGKTSVAHVVAKQAGYSV 210
E T +K H + + DP +RP +++ L+ GPPG+GKT++AHV+A+ AGYSV
Sbjct: 364 KEATAPGKWKSHEQVLEEMLEAGLDPSQRPKQKVALLCGPPGLGKTTLAHVIARHAGYSV 423
Query: 211 MEINASDERAGDRVRHKVQNALFNHTF---NDKPVCLIADEIDGSVENGFIKVLLDIIKS 267
+E+NASD+R+ + R +++ A + KP CL+ DEIDG+ I VLL I+
Sbjct: 424 VEMNASDDRSPEVFRTRIEAATQMESVLGAGGKPNCLVIDEIDGA-PVAAINVLLSIL-- 480
Query: 268 DSKATHDLITGRTGKDHHFKSSARLQXXXXXXXXLLTRPIIAVCNNVYANALEKLRPHSE 327
+ K ++ G G R + LL RPII +CN+ +A +L +L+ +
Sbjct: 481 NRKGPQEV--GPQGPAVPSGGGRRRR----AEGGLLMRPIICICNDQFAPSLRQLKQQAF 534
Query: 328 IIHFQKPSENALMERLEYVCKKEKVHVSKTLLKELAVLSQGDVRNSLNNLQFMTKNGFDK 387
++HF + L++RL+ V ++ + +L L + D+R +N LQF+ G +
Sbjct: 535 LLHFPPTLPSRLVQRLQEVSLRQGMRADPGVLAALCEKTDNDIRACINTLQFLYSRGQRE 594
Query: 388 DKLVTNGSDAEWTDDKRKDIGITW---FKICNSIFKR---DPYL---------------- 425
+ + D+R+ + W F++ + +R DP L
Sbjct: 595 LSVRDVQATRVGLKDQRRGLFSVWQEVFQLPRAQRRRVGQDPALPADTLLLGDGDAGSLT 654
Query: 426 DVKLQLKNLLRDVETSGNYERIIEGCFTLFPEVNYSDHGVTKPGRISDWLFFNDRMFQSL 485
+ +L ++G +E++++G F F + D + DWL F+D + +
Sbjct: 655 SASQRFYRVLHAAASAGEHEKVVQGLFDNFLRLRLRDSSLGAVCVALDWLAFDDLLAGAA 714
Query: 486 FEHNG-ELLRYCAFTPLEFFVMFGDIANKDELKVKTNSFEIKERERASLNLLDVINSKCS 544
+LLRY F P+ F V+F ++ + ++ E + R NL+ + S +
Sbjct: 715 HHSQSFQLLRYPPFLPVAFHVLFAS-SHTPRITFPSSQQEAQNRMSQMRNLIQTLVSGIA 773
Query: 545 ITSMIYANKQTLLMEILPMVDEIL-------STDLSRVRDAQIRQRSLDLVIPLFHDFQL 597
+ A Q LL++ L ++ +IL ST L R+ Q L ++ + L
Sbjct: 774 PATRSRATPQALLLDALCLLLDILAPKLRPVSTQLYSTREKQ----QLASLVGTMLAYSL 829
Query: 598 QIQQSTNPDTRNALVVDPPLDQIVL---LDGKKLREVITKRPIALKFSLAKLEEEKIRKR 654
+Q PD + ++P ++++ L +K TK+ IA + + K+ R
Sbjct: 830 TYRQERTPDGQYIYRLEPNVEELCRFPELPARKPLTYQTKQLIAREIEVEKMR----RAE 885
Query: 655 ALDRVMRDKETNENNRKRQ-KMEGTGSRSV--DFFKDQYNSIKTTAENASLVAPPTKK-- 709
A RV + + + + + G G + V ++ ++ A+ P K
Sbjct: 886 ASARVENSPQVDGSPPGLEGLLGGIGEKGVHRPAPRNHEQRLEHIMRRAAREEQPEKDFF 945
Query: 710 -----TRSAFSFTRESTPTTXXXXXXXXXXXXXMRIWVKYKEGFSNAVRKNI 756
+A ++ P +W ++ EG SNAVR+++
Sbjct: 946 GRVVVRSTAVPSAGDTAPEQDSVERRMGTAVGRSEVWFRFNEGVSNAVRRSL 997
>At1g04730 [DL] KOG1969 DNA replication checkpoint protein CHL12/CTF18
Length = 954
Score = 157 bits (397), Expect = 6e-38
Identities = 124/428 (28%), Positives = 198/428 (45%), Gaps = 74/428 (17%)
Query: 114 LWTEKWRPHKFLDLVGNERLNRRVLFWLRQWSPLVFDEELPE-----LTTFKKHSNPEND 168
LW +K+ P F +L+ +E+ NR VL WL+QW VF E+ L+ K+HS +
Sbjct: 233 LWVDKYSPSSFTELLSDEQTNREVLLWLKQWDASVFGSEIRSTTEAVLSALKRHSTTSHH 292
Query: 169 ASDEYADPLKR---------------------------------------PMKRILLIHG 189
+ A K+ P ++ILL+ G
Sbjct: 293 QKSDSAFTRKKQFNRWSKESFGYSKNAEVSNTNTADINDLWNKKSKLTGPPEQKILLLCG 352
Query: 190 PPGIGKTSVAHVVAKQAGYSVMEINASDERAGDRVRHKVQNA--LFNHTFNDKPVCLIAD 247
PG+GKT++AH+ AK GY V+EINASDER+ + ++ + + + T + +P CL+ D
Sbjct: 353 APGLGKTTLAHIAAKHCGYRVVEINASDERSASAIETRILDVVQMNSVTADSRPKCLVID 412
Query: 248 EIDGSVENGFIKVLLDIIKSDSKATHDLITGRTGKDHHFKSSARLQXXXXXXXXLLTRPI 307
EIDG++ +G K +D+I A TG+ ++ SS + L+RP+
Sbjct: 413 EIDGALGDG--KGAVDVILKMVLAERKHATGKENVENVKTSSKK-----DRRTAPLSRPV 465
Query: 308 IAVCNNVYANALEKLRPHSEIIHFQKPSENALM-------ERLEYVCKKEKVHVSKTLLK 360
I +CN++YA AL LR +++ F +P+ + ++ +RL+Y+C E + L
Sbjct: 466 ICICNDLYAPALRPLRQIAKVHIFVQPTVSRVVNRLICVNDRLKYICNMEGMKARSFALS 525
Query: 361 ELAVLSQGDVRNSLNNLQFMTKNGFDKDKLVTNGSDAEWTDDKRKDIGITWFKICNSIF- 419
LA ++ D+R+ LN LQF+ K K N D RKD+ + F I IF
Sbjct: 526 ALAEYTECDIRSCLNTLQFLYKK-----KETINVIDIGSQVVGRKDMSKSLFDIWKEIFT 580
Query: 420 ----KRDPYLDVK-LQLKN---LLRDVETSGNYERIIEGCFTLFPEVNYSDHGVTKPGRI 471
KR+ D KN L V + G+Y+ I +G +++Y D + K
Sbjct: 581 TRKMKRERSNDASGSGAKNFDFLHSLVSSRGDYDLIFDGIHENILQLHYHDPVMDKTISC 640
Query: 472 SDWLFFND 479
D L +D
Sbjct: 641 LDGLGTSD 648
>CE06149 [DL] KOG1969 DNA replication checkpoint protein CHL12/CTF18
Length = 850
Score = 157 bits (396), Expect = 8e-38
Identities = 155/599 (25%), Positives = 274/599 (44%), Gaps = 81/599 (13%)
Query: 112 NTLWTEKWRPHKFLDLVGNERLNRRVLFWLRQWSPLVFDEELPELTTFKKHSNPENDASD 171
++LW K+ F DL+ + +NR +L WL+ W VF +++ +L E D
Sbjct: 262 SSLWVNKYEAKNFSDLLSDSTVNRNILTWLKMWDECVFHQKVDDLLASLGEKEREVLHMD 321
Query: 172 EYADPLKRPMKRILLIHGPPGIGKTSVAHVVAKQAGYSVMEINASDERAGDRVRHKVQNA 231
++RP ++LL+ GP G+GK+++A +VA+QAGYS +++NASD R + ++ A
Sbjct: 322 N--GKIRRPSSKMLLLSGPAGLGKSTLARIVARQAGYSTIDVNASDARTVADLNKVLEGA 379
Query: 232 LFNHTFND---KPVCLIADEIDGSVENGFIKVLLDIIKSDSKATHDLITGRTGKDHHFKS 288
+ D +P CLI DEIDG+ + I+ L+ I++ TGK
Sbjct: 380 VKTSRTLDADQRPACLILDEIDGTPID-TIRHLVRCIQA------------TGK------ 420
Query: 289 SARLQXXXXXXXXLLTRPIIAVCNNVYANALEKLRPHSEIIHFQKPSENALMERLEYVCK 348
+ RPII +CNN+Y AL LR + + ++ L +RLE +C
Sbjct: 421 ------------KAIRRPIIGICNNLYTPALRDLRGVAWCVQLVATKQDVLAKRLEEICD 468
Query: 349 KEKVHVSKTLLKELAVLSQGDVRNSLNNLQFMTKNGFDKDKLVTNGSDAEWTDDKRKDIG 408
+E++ + L++L L D+R+S+N LQ++ ++ + E +K K
Sbjct: 469 RERLRCDLSTLRKLCELCANDMRHSINTLQWVAVAARKSNRAIGMKLIHE-VIEKEKGGS 527
Query: 409 ITWFKICNSIFKRDPYLDVKLQLKNL---LRDVE----TSGNYERIIEGCFTLFPEVNYS 461
+ F+ +SI + + D K +K++ + D+E G ER + G ++
Sbjct: 528 ASIFEHWSSILELSKHTDAKGGIKSVRERIFDIERISADHGGEERFVSGL--------HA 579
Query: 462 DHGVTKP----GRISDWLFFND---RMFQSLFEHNGELLRYCAFTPLEFFV-MFGDIANK 513
++ VT P + S W F D ++ SL N +L+Y FFV + +IA
Sbjct: 580 NYLVTLPIGVIRKASTWFLFYDDIQKIVHSL--QNWSVLKYV----FSFFVSLHLNIATH 633
Query: 514 DELKVKTNSFE--IKERERASLNLLDVINSKCSITSMIYANKQTLLMEILPMVDEILSTD 571
+ + E I ++ + S + + S C S A K+ LL++ILP + I+
Sbjct: 634 ARVPIAYPQLEQNIFQKTKESEETISAVRS-CG-QSTRGAPKKELLLDILPFIVNIVQPP 691
Query: 572 LSRVRDAQIRQRSL---DLVIPLFHDFQLQIQQSTNPDTRNALVVDPPLDQIVL--LDGK 626
+ + ++ QR L + + + D+ L + D N L P +D + + LDG
Sbjct: 692 IKPMNESLYNQRELATFNQTVSIMCDYGLTYTATMVKDQVNWLFT-PSIDILTMFPLDGP 750
Query: 627 KLREV--ITKRPIALKFSLAKL---EEEKIRKRALDRVMRDKETNENNRKRQKMEGTGS 680
K + T++ IA K +L ++ E +R + K E+ K++K G+
Sbjct: 751 KRPYLANATRQMIAHKITLMRVRLTESTSNTERISTNADKIKAIVESESKKKKRLSAGA 809
>7295770 [DL] KOG1969 DNA replication checkpoint protein CHL12/CTF18
Length = 1397
Score = 152 bits (385), Expect = 1e-36
Identities = 139/607 (22%), Positives = 254/607 (40%), Gaps = 81/607 (13%)
Query: 58 QIDTSWSADEAYGININALLDRIENDVGDSTPTNNLQPQXXXXXXXXXXRLSSGNTLWTE 117
Q+D + E G + D+I + G+ + + S LW +
Sbjct: 463 QLDLISARGEVVGSLLGEAKDKIWQEAGEIVLSRATAAEDADVTLVNSNANSEPGRLWVD 522
Query: 118 KWRPHKFLDLVGNERLNRRVLFWLRQWSPLVFDEELP--------------------ELT 157
K++P K++DL+ +E NR +L+WL+ W +VF + +L
Sbjct: 523 KYKPRKYIDLLSDEMTNRSLLYWLKMWDKVVFGKAFHSKREQEAVTGEGGTAGGAANQLN 582
Query: 158 TFKKHSNP-----------ENDASDEYADPLKRPMKRILLIHGPPGIGKTSVAHVVAKQA 206
+F K + A + D L RPM+++ L+ GPPG+GKT++AH +A+ A
Sbjct: 583 SFNKRTGKFESNGGWRQRKSRQALNTNVDALGRPMQKVALLCGPPGLGKTTLAHTIARHA 642
Query: 207 GYSVMEINASDERAGDRVRHKVQNAL-FNHTFND--KPVCLIADEIDGSVENGFIKVLLD 263
GY+V EINASD+R+ + + ++N + N+ +P C++ DEIDG+ +
Sbjct: 643 GYNVREINASDDRSPEAFKLALENGTQMSSVLNEDKRPNCIVLDEIDGAPRQS----IDY 698
Query: 264 IIKSDSKATHDLITGRTGKDHHFKSSARLQXXXXXXXXLLTRPIIAVCNNVYANALEKLR 323
++K S A + + + K H +L RPII +CN+VY AL LR
Sbjct: 699 LVKFISDAVYTKVKAKGAKAEH---------------NVLKRPIICICNDVYDPALRPLR 743
Query: 324 PHSEIIHFQKPSENALMERLEYVCKKEKVHVSKTLLKELAVLSQGDVRNSLNNLQFMTKN 383
+ A + L + KE++ L LA S DVR+ ++++QF
Sbjct: 744 ------------QVAFVVTLVKIAFKEQLKTDFGSLIALAEKSGNDVRSCISSMQF---- 787
Query: 384 GFDKDKLVTNGSDAEWTDDKRKDIGITWFKICNSIFK-RDPYLDVKLQLKNLLRDVETSG 442
F+ K D + +KD F + ++IF+ + P + + + +
Sbjct: 788 -FNAQKHSLTLQDVLNNNLGQKDRHQGLFAVWDAIFRIQRPRKTLHTDANKVDEPAQVTM 846
Query: 443 NYERIIEGCFTLFPEVNYSDHGVTKPGRISDWLFFNDRM-FQSLFEHNGELLRYCAFTPL 501
+ P+ N++ GV + + W F D + Q + N + Y + +
Sbjct: 847 TNTSVTTRVRNKMPDPNFT--GVCEALK---WFCFTDTVQHQISRQQNYSVYPYLQYGFV 901
Query: 502 EFFVMFGDIANKDELKVKTNSFEIKERERASLNLLDVINSKCSITSMIYANKQTLLMEIL 561
+ ++F +A ++ T FE +++ N+ + + +++ TLL++ +
Sbjct: 902 AWHLLFATLA-WPKIAFPTRGFEFQQKSTNQRNIFQALCKGVTTSALGVGQGGTLLLDTV 960
Query: 562 PMVDEILSTDLSRVRDAQI---RQRSLDLVIPLFHDFQLQIQQSTNPDTRNALVVDPPLD 618
P++ ILS L V + Q+ L I + D L Q + + +P LD
Sbjct: 961 PLLKRILSPQLRSVAVQLLSPKEQQDLRHTIEVMVDLGLTFVQVKSQEGHYVFQTEPDLD 1020
Query: 619 QIVLLDG 625
+ G
Sbjct: 1021 ALSAFPG 1027
>At1g77620 [L] KOG1968 Replication factor C subunit RFC1 (large subunit)
Length = 1151
Score = 96.3 bits (238), Expect = 2e-19
Identities = 78/299 (26%), Positives = 130/299 (43%), Gaps = 15/299 (5%)
Query: 112 NTLWTEKWRPHKFLDLVGNERLNRRVLFWLRQWSPLVFDEELPELTTFKKHS-----NPE 166
N LW +K++P ++ GN + + WLRQW F L++ + S N
Sbjct: 310 NRLWVDKYQPRSASEVCGNTESVKVMNEWLRQWYERGFQPNKDFLSSDEDKSQDADYNCS 369
Query: 167 NDASDEYADPLKRPMKRILLIHGPPGIGKTSVAHVVAKQAGYSVMEINASDERAGDRVRH 226
SD + K +LLI GP G GK++ H AK+ G+ ++E N S+ R+G VR
Sbjct: 370 ESDSDSEKSGAEDSQKNVLLIVGPAGSGKSAAIHACAKEQGFKILESNTSECRSGTVVRQ 429
Query: 227 KVQNALFNHTFNDKPVCLIADEIDGSVENGFIKVLLDI-IKSDSKATHDLITGRTGKDHH 285
K AL +++ + L DG+ ++V+ + I++D LI D
Sbjct: 430 KFGEALKSYSLSRSLDPLFNSCTDGNGVEDVVEVMPVLHIQNDGANLKPLILFE-DVDIC 488
Query: 286 FKSSARLQXXXXXXXXLLTRPIIAVCNNV---YANALEKLRPHSEIIHFQKPSENALMER 342
F L P++ N+ + LE++ I+F PS+ L
Sbjct: 489 FAEDRGLVSAIQQIAVKAKGPVVLTANDKNHGLPDNLERIE-----IYFSLPSKEELFNH 543
Query: 343 LEYVCKKEKVHVSKTLLKELAVLSQGDVRNSLNNLQFMTKNGFDKDKLVTNGSDAEWTD 401
L VC E+V V+ L+E+ GD+R ++ LQF ++ + + V N + + D
Sbjct: 544 LSLVCAAEEVKVNHGSLEEMTTFCGGDIRKAIMQLQFWFQSKPKRARKVKNTGNQDLFD 602
>YOR217w [L] KOG1968 Replication factor C subunit RFC1 (large subunit)
Length = 861
Score = 91.7 bits (226), Expect = 4e-18
Identities = 81/332 (24%), Positives = 135/332 (40%), Gaps = 79/332 (23%)
Query: 114 LWTEKWRPHKFLDLVGNERLNRRVLFWLRQWSPLVFDEELPELTTFKKHSNPENDASDEY 173
LWT K+ P + GN+ ++ WL W E + +FK + D S +
Sbjct: 297 LWTVKYAPTNLQQVCGNKGSVMKLKNWLANW-------ENSKKNSFK---HAGKDGSGVF 346
Query: 174 ADPLKRPMKRILLIHGPPGIGKTSVAHVVAKQAGYSVMEINASDERAGDRVRHKVQNALF 233
R +++GPPGIGKT+ AH+VA++ GY ++E NASD R+ + V+NAL
Sbjct: 347 ---------RAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALD 397
Query: 234 N-------------HTFNDKPVCLIADEIDG--SVENGFIKVLLDIIKSDSKATHDLITG 278
N N K +I DE+DG + G + L + S
Sbjct: 398 NMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTS--------- 448
Query: 279 RTGKDHHFKSSARLQXXXXXXXXLLTRPIIAVCNNVYANALEKLRPHSEI---IHFQKPS 335
P+I +CN L K+RP + I F++P
Sbjct: 449 --------------------------TPLILICNE---RNLPKMRPFDRVCLDIQFRRPD 479
Query: 336 ENALMERLEYVCKKEKVHVSKTLLKELAVLSQGDVRNSLNNLQFMTKNGFDKDKLVTNGS 395
N++ RL + +EK + ++ L ++GD+R +N L ++ K + + +
Sbjct: 480 ANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLSTISTT----TKTINHEN 535
Query: 396 DAEWTDDKRKDIGITWFKICNSIFKRDPYLDV 427
E + K+I + F I + + Y D+
Sbjct: 536 INEISKAWEKNIALKPFDIAHKMLDGQIYSDI 567
>Hs15011931 [L] KOG1968 Replication factor C subunit RFC1 (large subunit)
Length = 1148
Score = 84.0 bits (206), Expect = 8e-16
Identities = 77/325 (23%), Positives = 132/325 (39%), Gaps = 68/325 (20%)
Query: 112 NTLWTEKWRPHKFLDLVG---NERLNRRVLFWLRQWSPLVFDEELPELTTFKKHSNPEND 168
N LW +K++P ++G ++ ++L WLR W E+ F K S ++
Sbjct: 583 NLLWVDKYKPTSLKTIIGQQGDQSCANKLLRWLRNWQKSS-SEDKKHAAKFGKFSGKDDG 641
Query: 169 ASDEYADPLKRPMKRILLIHGPPGIGKTSVAHVVAKQAGYSVMEINASDERAGDRVRHKV 228
+S + A L+ GPPG+GKT+ A +V ++ GYS +E+NASD R+ ++ V
Sbjct: 642 SSFKAA-----------LLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKSSLKAIV 690
Query: 229 QNALFNHTFN-----------DKPVCLIADEIDGSVEN---GFIKVLLDIIKSDSKATHD 274
+L N + LI DE+DG N G I+ L+ +IK H
Sbjct: 691 AESLNNTSIKGFYSNGAASSVSTKHALIMDEVDGMAGNEDRGGIQELIGLIK------HT 744
Query: 275 LITGRTGKDHHFKSSARLQXXXXXXXXLLTRPIIAVCNNVYANALEKLRPHSEIIHFQKP 334
I PII +CN+ + L + + FQ+P
Sbjct: 745 KI-----------------------------PIICMCNDRNHPKIRSLVHYCFDLRFQRP 775
Query: 335 SENALMERLEYVCKKEKVHVSKTLLKELAVLSQGDVRNSLNNLQFMTKNGFDKDKLVTNG 394
+ + + KE + + + E+ + + D+R L+NL + K +T
Sbjct: 776 RVEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNLSMWCA----RSKALTYD 831
Query: 395 SDAEWTDDKRKDIGITWFKICNSIF 419
+ +KDI + F + +F
Sbjct: 832 QAKADSHRAKKDIKMGPFDVARKVF 856
>7296805 [L] KOG1968 Replication factor C subunit RFC1 (large subunit)
Length = 986
Score = 83.2 bits (204), Expect = 1e-15
Identities = 69/285 (24%), Positives = 118/285 (41%), Gaps = 68/285 (23%)
Query: 115 WTEKWRPHKFLDLVGNERLNRRV---LFWLRQWSPLVFDEELPELTTFKKHSNP--ENDA 169
W +K +P ++VG V + WL +W + P+ NP +ND
Sbjct: 423 WVDKHKPTSIKEIVGQAGAASNVTKLMNWLSKWYVNHDGNKKPQ------RPNPWAKNDD 476
Query: 170 SDEYADPLKRPMKRILLIHGPPGIGKTSVAHVVAKQAGYSVMEINASDERAGDRVRHKVQ 229
Y + L+ GPPGIGKT+ A +V K+ G+ +E NASD R+ ++ +V
Sbjct: 477 GSFY---------KAALLSGPPGIGKTTTATLVVKELGFDAVEFNASDTRSKRLLKDEVS 527
Query: 230 NALFNHTFN----------DKPVCLIADEIDGSVEN---GFIKVLLDIIKSDSKATHDLI 276
L N + + + LI DE+DG N G ++ L+ +IK S
Sbjct: 528 TLLSNKSLSGYFTGQGQAVSRKHVLIMDEVDGMAGNEDRGGMQELIALIKDSS------- 580
Query: 277 TGRTGKDHHFKSSARLQXXXXXXXXLLTRPIIAVCNNVYANALEKLRPHSEIIHFQKPSE 336
PII +CN+ + L + + FQ+P
Sbjct: 581 ----------------------------IPIICMCNDRNHPKIRSLVNYCYDLRFQRPRL 612
Query: 337 NALMERLEYVCKKEKVHVSKTLLKELAVLSQGDVRNSLNNLQFMT 381
+ ++ +C KEKV +S ++E+ + D+R S+N++ ++
Sbjct: 613 EQIKGKIMSICFKEKVKISPAKVEEIIAATNNDIRQSINHIALLS 657
>SPBC23E6.07c [L] KOG1968 Replication factor C subunit RFC1 (large subunit)
Length = 934
Score = 82.8 bits (203), Expect = 2e-15
Identities = 69/272 (25%), Positives = 119/272 (43%), Gaps = 45/272 (16%)
Query: 109 SSGNTLWTEKWRPHKFLDLVGNERLNRRVLFWLRQWSPLVFDEELPELTTFKKHSNPEND 168
S + +WT K+ P D+ GN+ + +++ WL+ + H N +++
Sbjct: 355 SQPSQIWTSKYAPTSLKDICGNKGVVQKLQKWLQDY-----------------HKNRKSN 397
Query: 169 ASDEYADPLKRPMKRILLIHGPPGIGKTSVAHVVAKQAGYSVMEINASDERAGDRVRHKV 228
+ D L + + +L+ GPPGIGKT+ AH+VAK GY V+E+NASD R+ + +
Sbjct: 398 FNKPGPDGLG--LYKAVLLSGPPGIGKTTAAHLVAKLEGYDVLELNASDTRS----KRLL 451
Query: 229 QNALFNHTFNDKPVCLIADEIDGSVENGFIKVLLDIIKSDSKATHDLITGRTGKDHHFKS 288
LF T + + + +D+ KS D I G + D
Sbjct: 452 DEQLFGVTDSQSLAGYFGTKANP----------VDMAKSRLVLIMDEIDGMSSGDRGGVG 501
Query: 289 SARLQXXXXXXXXLLTRPIIAVCNNVYANALEKLRPHSEI---IHFQKPSENALMERLEY 345
+ PII +CN+ A KLRP + F++P N++ R+
Sbjct: 502 QLNMIIKKSMI------PIICICND---RAHPKLRPLDRTTFDLRFRRPDANSMRSRIMS 552
Query: 346 VCKKEKVHVSKTLLKELAVLSQGDVRNSLNNL 377
+ +E + +S + +L +Q D+R +N L
Sbjct: 553 IAYREGLKLSPQAVDQLVQGTQSDMRQIINLL 584
>CE20613 [L] KOG1968 Replication factor C subunit RFC1 (large subunit)
Length = 839
Score = 81.3 bits (199), Expect = 5e-15
Identities = 88/344 (25%), Positives = 143/344 (40%), Gaps = 76/344 (22%)
Query: 115 WTEKWRPHKFLDLVG---NERLNRRVLFWLRQWSPLVFDEELPELTTFKKHSNPENDASD 171
W +K++P + +LVG ++ ++L W++ W+ L E KK P S
Sbjct: 280 WVDKYKPKRMGELVGQNGDKSPINKLLEWIKDWAK----HNLGEGAKIKK-PKPAPWMSS 334
Query: 172 EYADPLKRPMKRILLIHGPPGIGKTSVAHVVAKQAGYSVMEINASDERAGDRVRHKVQNA 231
+ K L+ G PG+GKT+ A++ +Q G ++E+NASD R+ + K+
Sbjct: 335 QDGTSFKAA-----LLSGSPGVGKTTCAYMACQQLGLQLVEMNASDVRSKKHLEAKIGEL 389
Query: 232 LFNHT----FNDKPVC----------LIADEIDGSVEN---GFIKVLLDIIKSDSKATHD 274
+H F K LI DE+DG N I L+ IIK +SK
Sbjct: 390 SGSHQIEQFFGAKKCAPQDNQKVHHILIMDEVDGMSGNEDRAGISELIQIIK-ESKI--- 445
Query: 275 LITGRTGKDHHFKSSARLQXXXXXXXXLLTRPIIAVCNNVYANALEKLRPHSEIIHFQKP 334
PII +CN+ + L + + F KP
Sbjct: 446 -------------------------------PIICICNDRQHPKIRTLANYCYDLRFPKP 474
Query: 335 SENALMERLEYVCKKEKVHVSKTLLKELAVLSQGDVRNSLNNLQFMTKNG----FDKDKL 390
+ R+ +C +EK+ + K L E+ LS DVR ++ NLQ +K KD
Sbjct: 475 RVETIRSRMMTICSQEKMKIGKEELDEIIELSGHDVRQTIYNLQMRSKGVGAKINQKDMA 534
Query: 391 VTNGS------DAEWTDDKRKDIGITWFKICNSIFKRDPYLDVK 428
V S D+ T +++++ T + I +F +D YL++K
Sbjct: 535 VDAFSAARRLLDSRTTLMEKQEMFFTDYGIM-PLFVQDNYLNMK 577
>ECU05g1530 [L] KOG1968 Replication factor C subunit RFC1 (large subunit)
Length = 568
Score = 80.9 bits (198), Expect = 7e-15
Identities = 66/275 (24%), Positives = 116/275 (42%), Gaps = 75/275 (27%)
Query: 109 SSGNTLWTEKWRPHKFLDLVGNERLNRRVLFWLRQWSPLVFDEELPELTTFKKHSNPEND 168
S+ + +W+EK+RP K ++VGN+ + +++ +L+
Sbjct: 107 SASSGVWSEKYRPSKRDEIVGNQGIVKQLEDYLQG------------------------- 141
Query: 169 ASDEYADPLKRPMKRILLIHGPPGIGKTSVAHVVAKQAGYSVMEINASDERAGDRVRHKV 228
R + +L+ G PGIGKT+ AHVV K G +V+E NASD R+ + +KV
Sbjct: 142 ----------RTKYKAVLLSGQPGIGKTTTAHVVCKSLGLNVIEFNASDVRSKLEISNKV 191
Query: 229 QNALFNHTF----NDKPVCLIADEIDG-SVENGFIKVLLDIIKSDSKATHDLITGRTGKD 283
+ + + + + K LI DE+DG S + G I L+ I+K
Sbjct: 192 KAFVSSQSILRPGSSKSKVLIMDEVDGMSSDRGGIPELISIVKE---------------- 235
Query: 284 HHFKSSARLQXXXXXXXXLLTRPIIAVCNNVYANALEKLRPHSEIIHFQKPSENALMERL 343
PII +CN+ + L + + F+KP ++ R+
Sbjct: 236 -------------------TVVPIICICNDRNNPKIRTLSSYCLDLRFRKPDARQILSRV 276
Query: 344 EYVCKKEKVHVSKTLLKELAVLSQGDVRNSLNNLQ 378
+ + E + LL E+ GD+R +++ +Q
Sbjct: 277 KQILDMEGKKIPDGLLNEIISRGAGDIRYTISMVQ 311
>Hs19923605 [L] KOG1968 Replication factor C subunit RFC1 (large subunit)
Length = 1204
Score = 71.2 bits (173), Expect = 5e-12
Identities = 36/133 (27%), Positives = 70/133 (52%), Gaps = 4/133 (3%)
Query: 114 LWTEKWRPHKFLDLVGNERLNRRVLFWLRQWSPLVFDEELPELTTFKKHSNPENDASDEY 173
LWTEK++P +L+GNE +++ WL+ W EE L + + + ++
Sbjct: 1053 LWTEKYQPQTASELIGNELAIKKLHSWLKDWKRRAELEERQNLKGKRDEKHEDFSGGIDF 1112
Query: 174 A----DPLKRPMKRILLIHGPPGIGKTSVAHVVAKQAGYSVMEINASDERAGDRVRHKVQ 229
D + + +LI GP G+GKT+ + A++ G+ + E+NAS +R+G ++ +++
Sbjct: 1113 KGSSDDEEESRLCNTVLITGPTGVGKTAAVYACAQELGFKIFEVNASSQRSGRQILSQLK 1172
Query: 230 NALFNHTFNDKPV 242
A +H + + V
Sbjct: 1173 EATQSHQVDKQGV 1185
>7292439 [L] KOG0991 Replication factor C subunit RFC2
Length = 331
Score = 67.0 bits (162), Expect = 1e-10
Identities = 69/286 (24%), Positives = 113/286 (39%), Gaps = 95/286 (33%)
Query: 115 WTEKWRPHKFLDLVGNERLNRRVLFWLRQWSPLVFDEELPELTTFKKHSNPENDASDEYA 174
W EK+RP KF ++VGNE + + L+ F N N
Sbjct: 18 WIEKYRPVKFKEIVGNE-------------------DTVARLSVFATQGNAPN------- 51
Query: 175 DPLKRPMKRILLIHGPPGIGKTSVAHVVAK-----QAGYSVMEINASDERAGDRVRHKVQ 229
++I GPPG+GKT+ +A+ +V+E+NAS+ER D VR+K++
Sbjct: 52 ----------IIIAGPPGVGKTTTIQCLARILLGDSYKEAVLELNASNERGIDVVRNKIK 101
Query: 230 NALFNHTFNDKPVCL--------IADEIDGSVENG--FIKVLLDIIKSDSKATHDLITGR 279
F + V L I DE D E ++ ++I S ++
Sbjct: 102 ------MFAQQKVTLPRGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTR--------- 146
Query: 280 TGKDHHFKSSARLQXXXXXXXXLLTRPIIAVCNNVYANALEKLRPHSEIIHFQKPSENAL 339
A+ N +E ++ ++ F K S+ +
Sbjct: 147 ----------------------------FALACNTSEKIIEPIQSRCAMLRFTKLSDAQV 178
Query: 340 MERLEYVCKKEKVHVSKTLLKELAVLSQGDVRNSLNNLQFMTKNGF 385
+ +L V K EK++ ++ L+ + +QGD+R LNNLQ T GF
Sbjct: 179 LAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNLQ-STAQGF 223
>Hs4506491 [L] KOG0989 Replication factor C subunit RFC4
Length = 363
Score = 59.7 bits (143), Expect = 2e-08
Identities = 56/204 (27%), Positives = 83/204 (40%), Gaps = 33/204 (16%)
Query: 185 LLIHGPPGIGKTSVAHVVAKQA------GYSVMEINASDERAGDRVRHKVQNALFNHTFN 238
LL +GPPG GKTS A++ V+E+NASDER VR KV+N
Sbjct: 74 LLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFA------ 127
Query: 239 DKPVCLIADEIDGSVENGFIKVLLDIIKSDSKATHDLITGRTGKDHHFKSSARLQXXXXX 298
+ + DG F V+LD S + A + K+
Sbjct: 128 --QLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESK------------- 172
Query: 299 XXXLLTRPIIAVCNNVYANALEKLRPHSEIIHFQKPSENALMERLEYVCKKEKVHVSKTL 358
T +CN V + +E L F+ S+ +RL + KKE V +S
Sbjct: 173 -----TTRFCLICNYV-SRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEG 226
Query: 359 LKELAVLSQGDVRNSLNNLQFMTK 382
+ L +S+GD+R ++ LQ T+
Sbjct: 227 IAYLVKVSEGDLRKAITFLQSATR 250
>7293390 [L] KOG0989 Replication factor C subunit RFC4
Length = 288
Score = 58.9 bits (141), Expect = 3e-08
Identities = 48/199 (24%), Positives = 85/199 (42%), Gaps = 32/199 (16%)
Query: 185 LLIHGPPGIGKTSVAHVVAKQA-----GYSVMEINASDERAGDRVRHKVQNALFNHTFND 239
+L++GPPG GKTS ++Q ++E+NASDER + VR K++N +
Sbjct: 1 MLLYGPPGTGKTSTILAASRQIFGDMFKDRILELNASDERGINVVRTKIKNFSQLSASSV 60
Query: 240 KPVCLIADEIDGSVENGFIKVLLDIIKSDSKATHDLITGRTGKDHHFKSSARLQXXXXXX 299
+P DG F ++LD S + A + K+
Sbjct: 61 RP--------DGKPCPPFKIIILDEADSMTHAAQSALRRTMEKESR-------------- 98
Query: 300 XXLLTRPIIAVCNNVYANALEKLRPHSEIIHFQKPSENALMERLEYVCKKEKVHVSKTLL 359
+ +CN V + + + F+ E+ +++RL+Y+C+ E V +
Sbjct: 99 ----STRFCLICNYV-SRIIVPITSRCSKFRFKALGEDKVIDRLKYICEMEGVKIEDDAY 153
Query: 360 KELAVLSQGDVRNSLNNLQ 378
K + +S GD+R ++ LQ
Sbjct: 154 KSIVKISGGDLRRAITTLQ 172
>CE22399 [L] KOG1968 Replication factor C subunit RFC1 (large subunit)
Length = 1168
Score = 52.4 bits (124), Expect = 3e-06
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 15/113 (13%)
Query: 140 WLRQWSPLV---FDEELPELTTFKK--------HSNPENDASDEYADPLKRPMKRILLIH 188
WLR+W V + E+ E KK H + E+ + D L+ P L++
Sbjct: 767 WLRRWKRRVRKAMEREIAEQQGKKKKRKRRDEDHESDEDYEVEHQDDDLENP----LVLI 822
Query: 189 GPPGIGKTSVAHVVAKQAGYSVMEINASDERAGDRVRHKVQNALFNHTFNDKP 241
GP G+GKT++ +AKQ ++ I R+G ++ +Q AL +H + +P
Sbjct: 823 GPSGVGKTALFRALAKQENMRIISIGPETGRSGSEIKRNLQEALRSHRVDQQP 875
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.318 0.134 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,222,799
Number of Sequences: 60738
Number of extensions: 1938354
Number of successful extensions: 6289
Number of sequences better than 1.0e-05: 18
Number of HSP's better than 0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 6220
Number of HSP's gapped (non-prelim): 35
length of query: 763
length of database: 30,389,216
effective HSP length: 114
effective length of query: 649
effective length of database: 23,465,084
effective search space: 15228839516
effective search space used: 15228839516
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)