ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII3541 good K KOG2907 Transcription RNA polymerase I transcription factor TFIIS, subunit A12.2/RPA12
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII3541 1215461 1215940 160
(160 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YJR063w [K] KOG2907 RNA polymerase I transcription factor TFIIS ... 187 5e-48
SPCC1259.03 [K] KOG2907 RNA polymerase I transcription factor TF... 129 1e-30
7300774 [K] KOG2907 RNA polymerase I transcription factor TFIIS ... 79 3e-15
Hs7657709 [K] KOG2907 RNA polymerase I transcription factor TFII... 78 6e-15
CE08185 [K] KOG2907 RNA polymerase I transcription factor TFIIS ... 63 2e-10
At4g07950 [K] KOG2906 RNA polymerase III subunit C11 59 2e-09
At1g01210 [K] KOG2906 RNA polymerase III subunit C11 58 6e-09
ECU08g1330 [K] KOG2907 RNA polymerase I transcription factor TFI... 56 2e-08
Hs7706499 [K] KOG2906 RNA polymerase III subunit C11 54 7e-08
At3g25940 [K] KOG2907 RNA polymerase I transcription factor TFII... 49 4e-06
>YJR063w [K] KOG2907 RNA polymerase I transcription factor TFIIS subunit
A12.2/RPA12
Length = 125
Score = 187 bits (475), Expect = 5e-48
Identities = 87/125 (69%), Positives = 105/125 (83%), Gaps = 1/125 (0%)
Query: 37 MSVVGSLIFCLECGDLLDGQESSQGK-IRCNQCNASYNSSKFQNLKVVTSTNDKSFPSKI 95
MSVVGSLIFCL+CGDLL+ + G + C+QC A Y S+F NLKVVT+T D +FPS +
Sbjct: 1 MSVVGSLIFCLDCGDLLENPNAVLGSNVECSQCKAIYPKSQFSNLKVVTTTADDAFPSSL 60
Query: 96 RSKKSLVKTSIAKNELKDGAIINEKCPKCANDKMHYHTLQLRSADEGATVFYTCTACGYR 155
R+KKS+VKTS+ KNELKDGA I EKCP+C N++M+YHTLQLRSADEGATVFYTCT+CGY+
Sbjct: 61 RAKKSVVKTSLKKNELKDGATIKEKCPQCGNEEMNYHTLQLRSADEGATVFYTCTSCGYK 120
Query: 156 FRTNN 160
FRTNN
Sbjct: 121 FRTNN 125
>SPCC1259.03 [K] KOG2907 RNA polymerase I transcription factor TFIIS subunit
A12.2/RPA12
Length = 119
Score = 129 bits (325), Expect = 1e-30
Identities = 64/124 (51%), Positives = 81/124 (64%), Gaps = 5/124 (4%)
Query: 37 MSVVGSLIFCLECGDLLDGQESSQGKIRCNQCNASYNSSKFQNLKVVTSTNDKSFPSKIR 96
MS +GSLIFC ECG+LL+ + C+QC + Y S +F NL V T ++ +FPS ++
Sbjct: 1 MSAIGSLIFCSECGNLLESTTAQW--TTCDQCQSVYPSEQFANLVVETKSSASAFPSALK 58
Query: 97 SKKSLVKTSIAKNELKDGAIINEKCPKCANDKMHYHTLQLRSADEGATVFYTCTACGYRF 156
K S+V+ K E A I EKCPKC ND M +HTLQLRSADEG+TVFY C C Y+F
Sbjct: 59 LKHSIVQVESQKEE---AATIEEKCPKCGNDHMTFHTLQLRSADEGSTVFYECPRCAYKF 115
Query: 157 RTNN 160
TNN
Sbjct: 116 STNN 119
>7300774 [K] KOG2907 RNA polymerase I transcription factor TFIIS subunit
A12.2/RPA12
Length = 120
Score = 78.6 bits (192), Expect = 3e-15
Identities = 42/117 (35%), Positives = 62/117 (52%), Gaps = 7/117 (5%)
Query: 45 FCLECGDLLDGQESSQGKIRCNQCNASYNSSKFQNLKVVTSTNDKSF-PSKIRSKKSLVK 103
FC CG +L + +G + C C + + K + + ++ PSK+ ++
Sbjct: 10 FCPSCGSILP-ELQVKGNVICYNCKKEFQPDVYSGEKSEFTIHFNTYDPSKVFNRTKRES 68
Query: 104 TSIAKNELKDGAIINEKCPKCANDKMHYHTLQLRSADEGATVFYTCTACGYRFRTNN 160
S A DG ++ KCPKC +DKM Y TLQLRSADEG TVF+TC C ++ N+
Sbjct: 69 ESDA-----DGPVVERKCPKCNHDKMSYATLQLRSADEGQTVFFTCLKCKFKESENS 120
>Hs7657709 [K] KOG2907 RNA polymerase I transcription factor TFIIS subunit
A12.2/RPA12
Length = 126
Score = 77.8 bits (190), Expect = 6e-15
Identities = 40/120 (33%), Positives = 61/120 (50%), Gaps = 8/120 (6%)
Query: 36 CMSVVGSLIFCLECGDLLDGQESSQGKIRCNQCNASYNSSKFQNLKVVTSTNDKSFPSKI 95
C S L FC +CG +L +Q + C +C + N F+ V TS
Sbjct: 10 CSSFQSDLDFCSDCGSVLP-LPGAQDTVTCIRCGFNINVRDFEGKVVKTSV-------VF 61
Query: 96 RSKKSLVKTSIAKNELKDGAIINEKCPKCANDKMHYHTLQLRSADEGATVFYTCTACGYR 155
+ + S+ + G +++ +CP+C ++ M YHT Q+RSADEG TVFYTCT C ++
Sbjct: 62 HQLGTAMPMSVEEGPECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQ 121
>CE08185 [K] KOG2907 RNA polymerase I transcription factor TFIIS subunit
A12.2/RPA12
Length = 119
Score = 62.8 bits (151), Expect = 2e-10
Identities = 33/108 (30%), Positives = 54/108 (49%), Gaps = 8/108 (7%)
Query: 45 FCLECGDLLDGQESSQGKIRCNQCNASYNSSKFQNLKVVTSTNDKSFPSKIRSKKSLVKT 104
FC CG +L+ + + C C+ + + + V S +K + ++++ T
Sbjct: 12 FCGYCGAILELPAQAPATVSCKVCSTRWAVK--ERVDQVVSRVEKIY------ERTVADT 63
Query: 105 SIAKNELKDGAIINEKCPKCANDKMHYHTLQLRSADEGATVFYTCTAC 152
+N+ A+++ C KC + K Y T+Q RSADEG TVFYTC C
Sbjct: 64 DGIENDESADAVVDHICTKCGHSKASYSTMQTRSADEGQTVFYTCLKC 111
>At4g07950 [K] KOG2906 RNA polymerase III subunit C11
Length = 106
Score = 59.3 bits (142), Expect = 2e-09
Identities = 34/117 (29%), Positives = 55/117 (46%), Gaps = 19/117 (16%)
Query: 45 FCLECGDLLDGQESSQGKIRCNQCNASYNSSKFQNLKVVTSTNDKSFPSKIRSKKSLVKT 104
FC CG+LL + + C+ C N + +I+ K+ LVK
Sbjct: 3 FCPTCGNLLRYEGGGSSRFFCSTCPYVANIER---------------RVEIKKKQLLVKK 47
Query: 105 SI----AKNELKDGAIINEKCPKCANDKMHYHTLQLRSADEGATVFYTCTACGYRFR 157
SI K+++ A CP+C +DK ++ ++Q+RSADE + FY C C + +R
Sbjct: 48 SIEPVVTKDDIPTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCLKCEFTWR 104
>At1g01210 [K] KOG2906 RNA polymerase III subunit C11
Length = 106
Score = 57.8 bits (138), Expect = 6e-09
Identities = 34/118 (28%), Positives = 56/118 (46%), Gaps = 21/118 (17%)
Query: 45 FCLECGDLLDGQESSQGKIRCNQCN-ASYNSSKFQNLKVVTSTNDKSFPSKIRSKKSLVK 103
FC CG+LL + + C+ C +Y + + I+ K+ LVK
Sbjct: 3 FCPTCGNLLRYEGGGNSRFFCSTCPYVAYIQRQVE----------------IKKKQLLVK 46
Query: 104 TSI----AKNELKDGAIINEKCPKCANDKMHYHTLQLRSADEGATVFYTCTACGYRFR 157
SI K+++ A CP+C +DK ++ ++Q+RSADE + FY C C + +R
Sbjct: 47 KSIEAVVTKDDIPTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCLKCEFTWR 104
>ECU08g1330 [K] KOG2907 RNA polymerase I transcription factor TFIIS subunit
A12.2/RPA12
Length = 99
Score = 55.8 bits (133), Expect = 2e-08
Identities = 25/42 (59%), Positives = 30/42 (70%), Gaps = 1/42 (2%)
Query: 114 GAIINEKCPKCANDKMHYHTLQLRSADEGATVFYTCTACGYR 155
GA I +CP C ++M Y+T QLRS DEG TVFY+C CGYR
Sbjct: 54 GAKIKHRCPACGAEEMMYNTAQLRSTDEGQTVFYSC-KCGYR 94
>Hs7706499 [K] KOG2906 RNA polymerase III subunit C11
Length = 108
Score = 54.3 bits (129), Expect = 7e-08
Identities = 35/118 (29%), Positives = 57/118 (47%), Gaps = 15/118 (12%)
Query: 43 LIFCLECGDLLDGQESSQ-GKIRCNQCNASYNSSKFQNLKVVTSTNDKSFPSKIRSKKSL 101
L+FC CG+ L +E + + CN C +N + ++ +P K++ +
Sbjct: 2 LLFCPGCGNGLIVEEGQRCHRFACNTCPYVHN--------ITRKVTNRKYP-KLKEVDDV 52
Query: 102 VKTSIAKNELKDGAIINEKCPKCANDKMHYHTLQLRSADEGATVFYTC--TACGYRFR 157
+ + A + A E CPKC + + ++ LQ RSADE T FY C CG+R+R
Sbjct: 53 LGGAAAWENVDSTA---ESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWR 107
>At3g25940 [K] KOG2907 RNA polymerase I transcription factor TFIIS subunit
A12.2/RPA12
Length = 91
Score = 48.5 bits (114), Expect = 4e-06
Identities = 20/40 (50%), Positives = 26/40 (65%)
Query: 117 INEKCPKCANDKMHYHTLQLRSADEGATVFYTCTACGYRF 156
I + C KC + ++ Y T Q RSADEG T +YTC C +RF
Sbjct: 49 IKKACEKCQHPELVYTTRQTRSADEGQTTYYTCPNCAHRF 88
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.319 0.130 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,518,800
Number of Sequences: 60738
Number of extensions: 312347
Number of successful extensions: 2103
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2087
Number of HSP's gapped (non-prelim): 10
length of query: 160
length of database: 30,389,216
effective HSP length: 98
effective length of query: 62
effective length of database: 24,436,892
effective search space: 1515087304
effective search space used: 1515087304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)