ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII3581 good L KOG0989 Replication, recombination and repair Replication factor C, subunit RFC4
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII3581 1230397 1231452 352
(352 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YJR068w [L] KOG0989 Replication factor C subunit RFC4 488 e-138
SPAC23D3.02 [L] KOG0989 Replication factor C subunit RFC4 343 2e-94
Hs4506491 [L] KOG0989 Replication factor C subunit RFC4 312 5e-85
At1g21690 [L] KOG0989 Replication factor C subunit RFC4 281 8e-76
7293390 [L] KOG0989 Replication factor C subunit RFC4 237 2e-62
CE01268 [L] KOG0989 Replication factor C subunit RFC4 226 4e-59
CE29044 [L] KOG0990 Replication factor C subunit RFC5 212 6e-55
Hs6677723 [L] KOG0990 Replication factor C subunit RFC5 202 8e-52
At1g77470 [L] KOG0990 Replication factor C subunit RFC5 201 1e-51
YNL290w [L] KOG0990 Replication factor C subunit RFC5 198 9e-51
At1g63160 [L] KOG0991 Replication factor C subunit RFC2 193 3e-49
CE17139 [L] KOG0991 Replication factor C subunit RFC2 190 3e-48
7292439 [L] KOG0991 Replication factor C subunit RFC2 187 2e-47
Hs4506487 [L] KOG0991 Replication factor C subunit RFC2 186 3e-47
SPAC1687.03c [L] KOG0991 Replication factor C subunit RFC2 184 2e-46
YOL094c [L] KOG0991 Replication factor C subunit RFC2 182 6e-46
7297692 [L] KOG0990 Replication factor C subunit RFC5 181 1e-45
ECU02g0290 [L] KOG0990 Replication factor C subunit RFC5 171 1e-42
ECU09g1330 [L] KOG0991 Replication factor C subunit RFC2 162 7e-40
ECU02g0680 [L] KOG0989 Replication factor C subunit RFC4 147 3e-35
SPAPJ698.01c [L] KOG0990 Replication factor C subunit RFC5 134 3e-31
At5g27740 [DL] KOG2035 Replication factor C subunit RFC3 128 1e-29
YBR087w [DL] KOG2035 Replication factor C subunit RFC3 120 4e-27
ECU10g0780i [DL] KOG2035 Replication factor C subunit RFC3 120 4e-27
Hs4506489 [DL] KOG2035 Replication factor C subunit RFC3 110 2e-24
CE05396 [DL] KOG2035 Replication factor C subunit RFC3 110 2e-24
SPBC83.14c [DL] KOG2035 Replication factor C subunit RFC3 108 1e-23
7297827 [DL] KOG2035 Replication factor C subunit RFC3 94 2e-19
SPAC27E2.10c [L] KOG0990 Replication factor C subunit RFC5 92 9e-19
ECU05g1530 [L] KOG1968 Replication factor C subunit RFC1 (large ... 92 9e-19
At1g14460 [L] KOG0989 Replication factor C subunit RFC4 90 4e-18
At1g24290 [L] KOG2028 ATPase related to the helicase subunit of ... 89 1e-17
At2g02480 [L] KOG0989 Replication factor C subunit RFC4 85 1e-16
At4g24790 [L] KOG0989 Replication factor C subunit RFC4 83 5e-16
At5g45720 [L] KOG0989 Replication factor C subunit RFC4 79 1e-14
YOR217w [L] KOG1968 Replication factor C subunit RFC1 (large sub... 75 2e-13
At4g18820 [L] KOG0989 Replication factor C subunit RFC4 70 6e-12
SPBC23E6.07c [L] KOG1968 Replication factor C subunit RFC1 (larg... 68 2e-11
YNL218w [L] KOG2028 ATPase related to the helicase subunit of th... 58 2e-08
CE20613 [L] KOG1968 Replication factor C subunit RFC1 (large sub... 58 2e-08
Hs22058826 [L] KOG0990 Replication factor C subunit RFC5 54 3e-07
SPAC26H5.02c [L] KOG2028 ATPase related to the helicase subunit ... 51 2e-06
SPBC902.02c [DL] KOG1969 DNA replication checkpoint protein CHL1... 50 5e-06
7296805 [L] KOG1968 Replication factor C subunit RFC1 (large sub... 50 5e-06
>YJR068w [L] KOG0989 Replication factor C subunit RFC4
Length = 353
Score = 488 bits (1255), Expect = e-138
Identities = 238/329 (72%), Positives = 279/329 (84%)
Query: 22 KPWVEKYRPRKLDDVAAQDHAVTVLKRTLQTANLPHMLFYGPPGTGKTSTILALTKELYG 81
+PWVEKYRP+ LD+V AQDHAVTVLK+TL++ANLPHMLFYGPPGTGKTSTILALTKELYG
Sbjct: 25 QPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYG 84
Query: 82 PHLSNSRVLELNASDERGISIVREKVKNFARLTVSKPSESDLANYPCPPYKIIILDEADS 141
P L SR+LELNASDERGISIVREKVKNFARLTVSKPS+ DL NYPCPPYKIIILDEADS
Sbjct: 85 PDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADS 144
Query: 142 MTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDSSNALSRLQFI 201
MTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALD+SNA+ RL+FI
Sbjct: 145 MTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRFI 204
Query: 202 ANEESLKYEDGVLERILDISQGDLRKAITLLQSAAKIVLQNDDANTITLKHANELSGTIH 261
+ +E++K +DGVLERILDIS GDLR+ ITLLQSA+K D IT EL+G +
Sbjct: 205 SEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGVVP 264
Query: 262 EEILQDLINVIKGKDLNKIIDKVQEFVNQGWSAASALTQLHEYYIKNESYDTEFKNKVSW 321
+IL +++ +K D ++I V F+ GWSAAS + QLHEYYI N+++DT FKN++SW
Sbjct: 265 HDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNFDTNFKNQISW 324
Query: 322 LLFDSDSKLTNGASEHLQMLNLAMKVSQL 350
LLF +DS+L NG +EH+Q+LNL +K+SQL
Sbjct: 325 LLFTTDSRLNNGTNEHIQLLNLLVKISQL 353
>SPAC23D3.02 [L] KOG0989 Replication factor C subunit RFC4
Length = 340
Score = 343 bits (880), Expect = 2e-94
Identities = 174/326 (53%), Positives = 235/326 (71%), Gaps = 8/326 (2%)
Query: 23 PWVEKYRPRKLDDVAAQDHAVTVLKRTLQTANLPHMLFYGPPGTGKTSTILALTKELYGP 82
PWVE YRP+ LD V++Q+ V VLK+TL + NLPHMLFYG PGTGKTSTILAL++EL+GP
Sbjct: 20 PWVELYRPKTLDQVSSQESTVQVLKKTLLSNNLPHMLFYGSPGTGKTSTILALSRELFGP 79
Query: 83 HLSNSRVLELNASDERGISIVREKVKNFARLTVSKPSESDLANYPCPPYKIIILDEADSM 142
L SRVLELNASDERGISI+REKVK+FA+ TV+ + YPCPP+KIIILDEADSM
Sbjct: 80 QLMKSRVLELNASDERGISIIREKVKSFAKTTVTNKVDG----YPCPPFKIIILDEADSM 135
Query: 143 TADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDSSNALSRLQFIA 202
T DAQ+ALRRTME+Y+ +TRFCLICNY+TRIIDPL+SRCSK+RFK LD+ N + RL+FIA
Sbjct: 136 TQDAQAALRRTMESYARITRFCLICNYMTRIIDPLSSRCSKYRFKPLDNENMVKRLEFIA 195
Query: 203 NEESLKYEDGVLERILDISQGDLRKAITLLQSAAKIVLQNDDANTITLKHANELSGTIHE 262
++++ E GV+ +++ S GD+RKAIT LQSAA + IT+ EL+G +
Sbjct: 196 ADQAVSMEPGVVNALVECSGGDMRKAITFLQSAANL----HQGTPITISSVEELAGAVPY 251
Query: 263 EILQDLINVIKGKDLNKIIDKVQEFVNQGWSAASALTQLHEYYIKNESYDTEFKNKVSWL 322
I++ L++ K+++ I ++ +G+S L+QLH+ +K E+ + K K+
Sbjct: 252 NIIRSLLDTAYTKNVSNIETLSRDVAAEGYSTGIILSQLHDVLLKEETLSSPVKYKIFMK 311
Query: 323 LFDSDSKLTNGASEHLQMLNLAMKVS 348
L + D +L +GA E LQ+L+L +S
Sbjct: 312 LSEVDKRLNDGADETLQLLDLLSSIS 337
>Hs4506491 [L] KOG0989 Replication factor C subunit RFC4
Length = 363
Score = 312 bits (799), Expect = 5e-85
Identities = 169/332 (50%), Positives = 227/332 (67%), Gaps = 8/332 (2%)
Query: 18 KGQAKPWVEKYRPRKLDDVAAQDHAVTVLKRTLQTANLPHMLFYGPPGTGKTSTILALTK 77
K + PWVEKYRP+ +D+VA Q+ V VLK++L+ A+LP++LFYGPPGTGKTSTILA +
Sbjct: 34 KAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAAR 93
Query: 78 ELYGPHLSNSRVLELNASDERGISIVREKVKNFARLTVSKPSESDLANYPCPPYKIIILD 137
EL+GP L RVLELNASDERGI +VREKVKNFA+LTVS S SD PCPP+KI+ILD
Sbjct: 94 ELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVS-GSRSD--GKPCPPFKIVILD 150
Query: 138 EADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDSSNALSR 197
EADSMT+ AQ+ALRRTME S TRFCLICNYV+RII+PL SRCSKFRFK L R
Sbjct: 151 EADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQR 210
Query: 198 LQFIANEESLKYEDGVLERILDISQGDLRKAITLLQSAAKIVLQNDDANTITLKHANELS 257
L IA +E++K D + ++ +S+GDLRKAIT LQSA ++ IT K +++
Sbjct: 211 LLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLT----GGKEITEKVITDIA 266
Query: 258 GTIHEEILQDLINVIKGKDLNKIIDKVQEFVNQGWSAASALTQLHEYYIKNESYDTEFKN 317
G I E + + + +K+ V++ +++G +A + QLH+ ++N D + K+
Sbjct: 267 GVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEGHAATQLVNQLHDVVVENNLSDKQ-KS 325
Query: 318 KVSWLLFDSDSKLTNGASEHLQMLNLAMKVSQ 349
++ L + D L +GA EHLQ+++L V Q
Sbjct: 326 IITEKLAEVDKCLADGADEHLQLISLCATVMQ 357
>At1g21690 [L] KOG0989 Replication factor C subunit RFC4
Length = 336
Score = 281 bits (720), Expect = 8e-76
Identities = 157/321 (48%), Positives = 207/321 (63%), Gaps = 21/321 (6%)
Query: 21 AKPWVEKYRPRKLDDVAAQDHAVTVLKRTLQTANLPHMLFYGPPGTGKTSTILALTKELY 80
++PWVEKYRP+++ DVA Q+ V VL TLQTA+ PHMLFYGPPGTGKT+T LA+ +L+
Sbjct: 8 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLF 67
Query: 81 GPHLSNSRVLELNASDERGISIVREKVKNFARLTVSKPSESDLANYPCPPYKIIILDEAD 140
GP L SRVLELNASD+RGI++VR K+K+FA + V S + YPCP +KIIILDEAD
Sbjct: 68 GPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVG--SNHRQSGYPCPSFKIIILDEAD 125
Query: 141 SMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDSSNALSRLQF 200
SMT DAQ+ALRRTMETYS VTRF ICNY++RII+PLASRC+KFRFK L +R+
Sbjct: 126 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILH 185
Query: 201 IANEESLKYEDGVLERILDISQGDLRKAITLLQSAAKIVLQNDDANTITLKHANELSGT- 259
I NEE L + L + ISQGDLR+AIT LQSA ++ +TIT +SG
Sbjct: 186 ICNEEGLSLDGEALSTLSSISQGDLRRAITYLQSATRLF-----GSTITSTDLLNVSGVR 240
Query: 260 ------IHE------EILQDLINVIKGKDLNKIIDKVQEFVNQGWSAASALTQLHEYYIK 307
+H+ E++ L K D + +V V +G+ A+ + QL + +
Sbjct: 241 MKLTQYLHKCMVVPLEVVNKLFTACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAE 300
Query: 308 NESYDTEF-KNKVSWLLFDSD 327
+S T+ K K+ L ++D
Sbjct: 301 ADSDITDMQKAKICKCLAETD 321
>7293390 [L] KOG0989 Replication factor C subunit RFC4
Length = 288
Score = 237 bits (604), Expect = 2e-62
Identities = 134/286 (46%), Positives = 181/286 (62%), Gaps = 7/286 (2%)
Query: 58 MLFYGPPGTGKTSTILALTKELYGPHLSNSRVLELNASDERGISIVREKVKNFARLTVSK 117
ML YGPPGTGKTSTILA +++++G + R+LELNASDERGI++VR K+KNF++L+ S
Sbjct: 1 MLLYGPPGTGKTSTILAASRQIFGD-MFKDRILELNASDERGINVVRTKIKNFSQLSASS 59
Query: 118 PSESDLANYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPL 177
PCPP+KIIILDEADSMT AQSALRRTME S TRFCLICNYV+RII P+
Sbjct: 60 VRPD---GKPCPPFKIIILDEADSMTHAAQSALRRTMEKESRSTRFCLICNYVSRIIVPI 116
Query: 178 ASRCSKFRFKALDSSNALSRLQFIANEESLKYEDGVLERILDISQGDLRKAITLLQSAAK 237
SRCSKFRFKAL + RL++I E +K ED + I+ IS GDLR+AIT LQS +
Sbjct: 117 TSRCSKFRFKALGEDKVIDRLKYICEMEGVKIEDDAYKSIVKISGGDLRRAITTLQSCYR 176
Query: 238 IVLQNDDANTITLKHANELSGTIHEEILQDLINVIKGKDLNKIIDKVQEFVNQGWSAASA 297
+ NT L E+SG I E L+D + V + + ++ V+E +S
Sbjct: 177 LKGPEHIINTADL---FEMSGVIPEYYLEDYLEVCRSGNYERLEQFVREIGFSAYSVGQM 233
Query: 298 LTQLHEYYIKNESYDTEFKNKVSWLLFDSDSKLTNGASEHLQMLNL 343
+ Q E+ + + + K + L + +L +G SE+LQ+++L
Sbjct: 234 MEQFVEFIVHHPGLNDPQKATICDKLGECCFRLQDGGSEYLQIMDL 279
>CE01268 [L] KOG0989 Replication factor C subunit RFC4
Length = 334
Score = 226 bits (576), Expect = 4e-59
Identities = 110/221 (49%), Positives = 157/221 (70%), Gaps = 5/221 (2%)
Query: 24 WVEKYRPRKLDDVAAQDHAVTVLKRTLQTANLPHMLFYGPPGTGKTSTILALTKELYGPH 83
W EKYRP+ LDD+A QD VT+LK LQ +LPH+LFYGPPGTGKTS LA ++L+ +
Sbjct: 17 WTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPHLLFYGPPGTGKTSAALAFCRQLFPKN 76
Query: 84 LSNSRVLELNASDERGISIVREKVKNFARLTVSKPSESDLANYPCPPYKIIILDEADSMT 143
+ + RVL+LNASDERGI++VR+K+++F++ ++ D+ KIIILDE D+MT
Sbjct: 77 IFHDRVLDLNASDERGIAVVRQKIQSFSKSSLGHSHREDVLK-----LKIIILDEVDAMT 131
Query: 144 ADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDSSNALSRLQFIAN 203
+AQ+A+RR +E +S TRF LICNYV+R+I P+ SRC+KFRFK+L + + RL+ I +
Sbjct: 132 REAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPAEIQVQRLRTICD 191
Query: 204 EESLKYEDGVLERILDISQGDLRKAITLLQSAAKIVLQNDD 244
E D L+++++ S+GDLR+A+ LQS A I+ DD
Sbjct: 192 AEGTPMSDDELKQVMEYSEGDLRRAVCTLQSLAPILKSGDD 232
>CE29044 [L] KOG0990 Replication factor C subunit RFC5
Length = 388
Score = 212 bits (540), Expect = 6e-55
Identities = 128/341 (37%), Positives = 187/341 (54%), Gaps = 33/341 (9%)
Query: 23 PWVEKYRPRKLDDVAAQDHAVTVLKRTLQTANLPHMLFYGPPGTGKTSTILALTKELYGP 82
PWVEKYRP KLD++ A + V L + ++ LPH+LFYGPPGTGKT+T+LA +++Y P
Sbjct: 30 PWVEKYRPSKLDELVAHEQIVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLAAARQMYSP 89
Query: 83 HLSNSRVLELNASDERGISIVREKVKNFARLTVSKPSESDLANYPCPPYKIIILDEADSM 142
S VLELNASDERGI +VR + NFA+ T + S +N P+K++ILDEAD+M
Sbjct: 90 TKMASMVLELNASDERGIDVVRNTIVNFAQ-TKGLQAFSTSSNTGTVPFKLVILDEADAM 148
Query: 143 TADAQSALR--------------------RTMETYSGVTRFCLICNYVTRIIDPLASRCS 182
T DAQ+ALR R +E Y+ RFC+ICNY+ I+ + SRC+
Sbjct: 149 TKDAQNALRRLDKTDYEQNIIIHNVNIYFRVIEKYTDNVRFCIICNYLASIVPAIQSRCT 208
Query: 183 KFRFKALDSSNALSRLQFIANEESLKYEDGVLERILDISQGDLRKAITLLQSAA---KIV 239
+FRF LD + RL++I E LK + +L +S+GD+R I LQS A V
Sbjct: 209 RFRFAPLDQKLIVPRLEYIVETEQLKMTPDGKDALLIVSKGDMRTVINTLQSTAMSFDTV 268
Query: 240 LQNDDANTITLKHANELSGTIHEEILQDLINVIKGKDLNKIIDKVQEFVNQGWSAASALT 299
+N I E+ +E+++ L+N K +N I K+ E G++ +T
Sbjct: 269 SENTVYQCIGQPTPKEM-----KEVVKTLLNDPSKKCMNTIQTKLFE---NGYALQDVIT 320
Query: 300 QLHEYYIKNESYDTEFKNKVSWLLFDSDSKLTNGASEHLQM 340
LH++ + D E + + L + + L+ G S Q+
Sbjct: 321 HLHDFVFTLDIPD-EAMSAIITGLGEVEENLSTGCSNETQL 360
>Hs6677723 [L] KOG0990 Replication factor C subunit RFC5
Length = 340
Score = 202 bits (513), Expect = 8e-52
Identities = 116/337 (34%), Positives = 193/337 (56%), Gaps = 20/337 (5%)
Query: 9 KQKLNPSDGKGQAKPWVEKYRPRKLDDVAAQDHAVTVLKRTLQTANLPHMLFYGPPGTGK 68
KQ+ P+ K + PWVEKYRP+ L+D+ + ++ +++ + LPH+L YGPPGTGK
Sbjct: 7 KQQEQPAATKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGK 66
Query: 69 TSTILALTKELYGPHLSNSRVLELNASDERGISIVREKVKNFARL-TVSKPSESDLANYP 127
TSTILA K+LY S VLELNASD+RGI I+R + +FA T+ K
Sbjct: 67 TSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKG-------- 118
Query: 128 CPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFK 187
+K++ILDEAD+MT DAQ+ALRR +E ++ TRFCLICNY+++II L SRC++FRF
Sbjct: 119 ---FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFG 175
Query: 188 ALDSSNALSRLQFIANEESLKYEDGVLERILDISQGDLRKAITLLQSAAKIVLQNDDANT 247
L + RL+ + EE + + ++ ++ +S GD+R+A+ +LQS N
Sbjct: 176 PLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQST------NMAFGK 229
Query: 248 ITLKHANELSGTIHEEILQDLINVIKGKDLNKIIDKVQEFVN-QGWSAASALTQLHEYYI 306
+T + +G + + ++++ + +D + E +G + LT++H ++
Sbjct: 230 VTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRNITELKTLKGLALHDILTEIH-LFV 288
Query: 307 KNESYDTEFKNKVSWLLFDSDSKLTNGASEHLQMLNL 343
+ + + + + D + +L+ G +E +Q+ +L
Sbjct: 289 HRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQLSSL 325
>At1g77470 [L] KOG0990 Replication factor C subunit RFC5
Length = 369
Score = 201 bits (511), Expect = 1e-51
Identities = 119/325 (36%), Positives = 185/325 (56%), Gaps = 11/325 (3%)
Query: 18 KGQAKPWVEKYRPRKLDDVAAQDHAVTVLKRTLQTANLPHMLFYGPPGTGKTSTILALTK 77
+ +A PWVEKYRP+ LDDVAA + + R LPH+L YGPPGTGKTSTILA+ +
Sbjct: 35 QSKATPWVEKYRPQSLDDVAAHRDIIDTIDRLTNENKLPHLLLYGPPGTGKTSTILAVAR 94
Query: 78 ELYGPHLSNSRVLELNASDERGISIVREKVKNFARLTVSKPSESDLANYPCPPYKIIILD 137
+LYGP N +LELNASD+RGI +VR+++++FA +S + K+++LD
Sbjct: 95 KLYGPKYRNM-ILELNASDDRGIDVVRQQIQDFASTQSFSLGKSSV--------KLVLLD 145
Query: 138 EADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDSSNALSR 197
EAD+MT DAQ ALRR +E Y+ TRF LI N+V +II L SRC++FRF LD + R
Sbjct: 146 EADAMTKDAQFALRRVIEKYTKSTRFALIGNHVNKIIPALQSRCTRFRFAPLDGVHMSQR 205
Query: 198 LQFIANEESLKYEDGVLERILDISQGDLRKAITLLQSA--AKIVLQNDDANTITLKHANE 255
L+ + E L D L ++ +S GD+RKA+ +LQS A + +++ IT +
Sbjct: 206 LKHVIEAERLVVSDCGLAALVRLSNGDMRKALNILQSTHMASKEITEEESKQITEEDVYL 265
Query: 256 LSGTIHEEILQDLINVIKGKDLNKIIDKVQEFVNQGWSAASALTQLHEYYIKNESYDTEF 315
+G + ++ + + + K ++ V E + A + + +I +
Sbjct: 266 CTGNPLPKDIEQISHWLLNKPFDECYKDVSEIKTRKGLAIVDIVKEITLFIFKIKMPSAV 325
Query: 316 KNKVSWLLFDSDSKLTNGASEHLQM 340
+ ++ L D + +L+ G ++ LQ+
Sbjct: 326 RVQLINDLADIEYRLSFGCNDKLQL 350
>YNL290w [L] KOG0990 Replication factor C subunit RFC5
Length = 340
Score = 198 bits (504), Expect = 9e-51
Identities = 124/334 (37%), Positives = 182/334 (54%), Gaps = 45/334 (13%)
Query: 23 PWVEKYRPRKLDDVAAQDHAVTVLKRTLQTANLPHMLFYGPPGTGKTSTILALTKELYGP 82
PWVEKYRP LD+V Q+ +T +++ + LPH+LFYGPPGTGKTSTI+AL +E+YG
Sbjct: 14 PWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK 73
Query: 83 HLSNSRVLELNASDERGISIVREKVKNFA--RLTVSKPSESDLANYPCPPYKIIILDEAD 140
+ SN VLELNASD+RGI +VR ++K+FA R SK +K+IILDEAD
Sbjct: 74 NYSNM-VLELNASDDRGIDVVRNQIKDFASTRQIFSKG------------FKLIILDEAD 120
Query: 141 SMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDSSNALSRLQF 200
+MT AQ+ALRR +E Y+ TRFC++ NY ++ L SRC++FRF+ L R+
Sbjct: 121 AMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIAN 180
Query: 201 IANEESLKYEDGVLERILDISQGDLRKAITLLQSAAKIVLQNDDANTITLKHANELSGTI 260
+ E LK + ++++S GD+R+ + +LQS K L N D + I+ E G
Sbjct: 181 VLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQS-CKATLDNPDEDEISDDVIYECCGAP 239
Query: 261 HEEILQDLINVIKGKD-------LNKI--------IDKVQEFVNQGWSAASALTQLHEYY 305
L+ ++ I D LNK+ ID ++ V L +Y
Sbjct: 240 RPSDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVK----------ILEDYE 289
Query: 306 IKNESYDTEFKNKVSWLLFDSDSKLTNGASEHLQ 339
++NE K L D + ++ G ++ +Q
Sbjct: 290 LQNEETRVHLLTK----LADIEYSISKGGNDQIQ 319
>At1g63160 [L] KOG0991 Replication factor C subunit RFC2
Length = 333
Score = 193 bits (491), Expect = 3e-49
Identities = 125/341 (36%), Positives = 182/341 (52%), Gaps = 31/341 (9%)
Query: 15 SDGKGQAKPWVEKYRPRKLDDVAAQDHAVTVLKRTLQTANLPHMLFYGPPGTGKTSTILA 74
S G G +PWVEKYRP K+ D+ + AV+ L+ + N+P+++ GPPGTGKT++ILA
Sbjct: 8 STGDGYNEPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILA 67
Query: 75 LTKELYGPHLSNSRVLELNASDERGISIVREKVKNFARLTVSKPSESDLANYPCPPYKII 134
L EL G + + VLELNASD+RGI +VR K+K FA+ V+ P +K++
Sbjct: 68 LAHELLGTNYKEA-VLELNASDDRGIDVVRNKIKMFAQKKVTLPPGR---------HKVV 117
Query: 135 ILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDSSNA 194
ILDEADSMT+ AQ ALRRT+E YS TRF L CN +II+P+ SRC+ RF L
Sbjct: 118 ILDEADSMTSGAQQALRRTIEIYSNSTRFALACNTSAKIIEPIQSRCALVRFSRLSDQQI 177
Query: 195 LSRLQFIANEESLKYEDGVLERILDISQGDLRKAITLLQ---SAAKIVLQNDDANTITLK 251
L RL + E + Y LE I+ + GD+R+A+ LQ S V Q +
Sbjct: 178 LGRLLVVVAAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFSFVNQENVFKVCDQP 237
Query: 252 HANELSGTIHEEILQDLINVIKGKDLNKIIDKVQEFVNQGWSAASALTQLHEYYIKN--- 308
H + + NV++ K + D +++ + G+S +T L IKN
Sbjct: 238 HPLHVKNIVR--------NVLESK-FDIACDGLKQLYDLGYSPTDIITTLFR-IIKNYDM 287
Query: 309 -ESYDTEFKNKVSWLLFDSDSKLTNGASEHLQMLNLAMKVS 348
E EF + + + ++ +G +LQ+ L K+S
Sbjct: 288 AEYLKLEFMKETGF----AHMRICDGVGSYLQLCGLLAKLS 324
>CE17139 [L] KOG0991 Replication factor C subunit RFC2
Length = 334
Score = 190 bits (482), Expect = 3e-48
Identities = 108/284 (38%), Positives = 163/284 (57%), Gaps = 16/284 (5%)
Query: 18 KGQAKPWVEKYRPRKLDDVAAQDHAVTVLKRTLQTANLPHMLFYGPPGTGKTSTILALTK 77
K Q PWVEKYRP+ L D+ ++ V LK N+P+++ GPPG GKT+++ AL +
Sbjct: 6 KQQLAPWVEKYRPKVLADIVGNENIVERLKVIGHEGNVPNIVLSGPPGCGKTTSVWALAR 65
Query: 78 ELYGPHLSNSRVLELNASDERGISIVREKVKNFARLTVSKPSESDLANYPCPPYKIIILD 137
EL G + + VLELNASDERGI +VR ++K FA+ V+ P +KIIILD
Sbjct: 66 ELLGDKVKEA-VLELNASDERGIDVVRHRIKTFAQTKVTLPEGR---------HKIIILD 115
Query: 138 EADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDSSNALSR 197
EADSMT AQ ALRRTME Y+ TRF L CN +II+P+ SRC+ R+ L L+R
Sbjct: 116 EADSMTDGAQQALRRTMEMYTKTTRFALACNQSEKIIEPIQSRCALLRYTKLSPVQLLTR 175
Query: 198 LQFIANEESLKYEDGVLERILDISQGDLRKAITLLQSAAKIVLQNDDANTITLKHANELS 257
++ +A E + Y+DG LE IL +QGD+R+A+ LQ+ + ++ ++
Sbjct: 176 VKEVAKAEKVNYDDGGLEAILFTAQGDMRQALNNLQATVNAY------ELVNKENVLKVC 229
Query: 258 GTIHEEILQDLINVIKGKDLNKIIDKVQEFVNQGWSAASALTQL 301
H +++ +++ + + + EF G+S+ ++ L
Sbjct: 230 DEPHPDLMIKMLHYCTDRKFFEASKIIHEFHRLGFSSDDIVSTL 273
>7292439 [L] KOG0991 Replication factor C subunit RFC2
Length = 331
Score = 187 bits (476), Expect = 2e-47
Identities = 117/333 (35%), Positives = 175/333 (52%), Gaps = 17/333 (5%)
Query: 15 SDGKGQAKPWVEKYRPRKLDDVAAQDHAVTVLKRTLQTANLPHMLFYGPPGTGKTSTILA 74
+D K PW+EKYRP K ++ + V L N P+++ GPPG GKT+TI
Sbjct: 9 ADDKRSHLPWIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQC 68
Query: 75 LTKELYGPHLSNSRVLELNASDERGISIVREKVKNFARLTVSKPSESDLANYPCPPYKII 134
L + L G + VLELNAS+ERGI +VR K+K FA+ V+ P +KI+
Sbjct: 69 LARILLGDSYKEA-VLELNASNERGIDVVRNKIKMFAQQKVTLPRGR---------HKIV 118
Query: 135 ILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDSSNA 194
ILDEADSMT AQ ALRRTME YS TRF L CN +II+P+ SRC+ RF L +
Sbjct: 119 ILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQV 178
Query: 195 LSRLQFIANEESLKYEDGVLERILDISQGDLRKAITLLQSAAKIVLQNDDANTITLKHAN 254
L++L +A E L Y + LE I+ +QGD+R+ + LQS A+ IT ++
Sbjct: 179 LAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNLQSTAQ------GFGDITAENVF 232
Query: 255 ELSGTIHEEILQDLINVIKGKDLNKIIDKVQEFVNQGWSAASALTQLHEYYIKNESYDTE 314
++ H ++L+++I+ D++K + + G+S + + K + D
Sbjct: 233 KVCDEPHPKLLEEMIHHCAANDIHKAYKILAKLWKLGYSPEDIIANIFR-VCKRINIDEH 291
Query: 315 FKNKVSWLLFDSDSKLTNGASEHLQMLNLAMKV 347
K + + K+ +G + LQ+ L K+
Sbjct: 292 LKLDFIREIGITHMKIIDGINSLLQLTALLAKL 324
>Hs4506487 [L] KOG0991 Replication factor C subunit RFC2
Length = 354
Score = 186 bits (473), Expect = 3e-47
Identities = 100/212 (47%), Positives = 139/212 (65%), Gaps = 10/212 (4%)
Query: 23 PWVEKYRPRKLDDVAAQDHAVTVLKRTLQTANLPHMLFYGPPGTGKTSTILALTKELYGP 82
PWVEKYRP KL+++ + V+ L+ + N+P+++ GPPGTGKT++IL L + L GP
Sbjct: 37 PWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 96
Query: 83 HLSNSRVLELNASDERGISIVREKVKNFARLTVSKPSESDLANYPCPPYKIIILDEADSM 142
L ++ +LELNAS++RGI +VR K+K FA+ V+ P +KIIILDEADSM
Sbjct: 97 ALKDA-MLELNASNDRGIDVVRNKIKMFAQQKVTLPKGR---------HKIIILDEADSM 146
Query: 143 TADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDSSNALSRLQFIA 202
T AQ ALRRTME YS TRF L CN +II+P+ SRC+ R+ L + L+RL +
Sbjct: 147 TDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVI 206
Query: 203 NEESLKYEDGVLERILDISQGDLRKAITLLQS 234
+E + Y D LE I+ +QGD+R+A+ LQS
Sbjct: 207 EKERVPYTDDGLEAIIFTAQGDMRQALNNLQS 238
>SPAC1687.03c [L] KOG0991 Replication factor C subunit RFC2
Length = 342
Score = 184 bits (467), Expect = 2e-46
Identities = 111/280 (39%), Positives = 156/280 (55%), Gaps = 18/280 (6%)
Query: 23 PWVEKYRPRKLDDVAAQDHAVTVLKRTLQTANLPHMLFYGPPGTGKTSTILALTKELYGP 82
PWVEKYRP LDD+ + + LK + N+PH++ G PG GKT++IL L L GP
Sbjct: 22 PWVEKYRPIVLDDIVGNEETIDRLKVIAKEGNMPHLVISGMPGIGKTTSILCLAHALLGP 81
Query: 83 HLSNSRVLELNASDERGISIVREKVKNFARLTVSKPSESDLANYPCPPYKIIILDEADSM 142
VLELNASDERGI +VR ++K FA+ V P +KIIILDEADSM
Sbjct: 82 AYKEG-VLELNASDERGIDVVRNRIKAFAQKKVILPPGR---------HKIIILDEADSM 131
Query: 143 TADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDSSNALSRLQFIA 202
TA AQ ALRRTME YS TRF L CN +II+P+ SRC+ R+ L L RL I
Sbjct: 132 TAGAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRCAILRYSRLTDQQVLQRLLNIC 191
Query: 203 NEESLKYEDGVLERILDISQGDLRKAITLLQS-AAKIVLQNDDANTITLKHANELSGTIH 261
E + Y D L ++ ++GD+R+A+ LQS A L N + + A++ S
Sbjct: 192 KAEKVNYTDDGLAALIMTAEGDMRQAVNNLQSTVAGFGLVNGEN---VFRVADQPSPV-- 246
Query: 262 EEILQDLINVIKGKDLNKIIDKVQEFVNQGWSAASALTQL 301
+ ++ + +++ ++K+Q + G+SA +T +
Sbjct: 247 --AIHAMLTACQSGNIDVALEKLQGIWDLGFSAVDIVTNM 284
>YOL094c [L] KOG0991 Replication factor C subunit RFC2
Length = 323
Score = 182 bits (462), Expect = 6e-46
Identities = 117/333 (35%), Positives = 175/333 (52%), Gaps = 24/333 (7%)
Query: 23 PWVEKYRPRKLDDVAAQDHAVTVLKRTLQTANLPHMLFYGPPGTGKTSTILALTKELYGP 82
PWVEKYRP+ L D+ + L++ + N+PHM+ G PG GKT+++ L EL G
Sbjct: 10 PWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGR 69
Query: 83 HLSNSRVLELNASDERGISIVREKVKNFARLTVSKPSESDLANYPCPPYKIIILDEADSM 142
++ VLELNASD+RGI +VR ++K+FA+ + P +KI+ILDEADSM
Sbjct: 70 SYADG-VLELNASDDRGIDVVRNQIKHFAQKKLHLPPGK---------HKIVILDEADSM 119
Query: 143 TADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDSSNALSRLQFIA 202
TA AQ ALRRTME YS TRF CN +II+PL SRC+ R+ L + L RL I
Sbjct: 120 TAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLQII 179
Query: 203 NEESLKYEDGVLERILDISQGDLRKAITLLQSAAK---IVLQNDDANTITLKHANELSGT 259
E +KY + LE I+ ++GD+R+AI LQS +V ++ + H +
Sbjct: 180 KLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIVDSPHPLIVKKM 239
Query: 260 IHEEILQDLINVIKGKDLNKIIDKVQEFVNQGWSAASALTQLHEYYIKNESYDTEFKNKV 319
+ L+D I +++ DL K + V + L Q+ ES E ++
Sbjct: 240 LLASNLEDSIQILR-TDLWKKGYSSIDIVTTSFRVTKNLAQV------KESVRLEMIKEI 292
Query: 320 SWLLFDSDSKLTNGASEHLQMLNLAMKVSQLYN 352
+ ++ G +LQ+ ++ K+ +L N
Sbjct: 293 GL----THMRILEGVGTYLQLASMLAKIHKLNN 321
>7297692 [L] KOG0990 Replication factor C subunit RFC5
Length = 297
Score = 181 bits (460), Expect = 1e-45
Identities = 109/285 (38%), Positives = 164/285 (57%), Gaps = 15/285 (5%)
Query: 55 LPHMLFYGPPGTGKTSTILALTKELYGPHLSNSRVLELNASDERGISIVREKVKNFARLT 114
LPH+LFYGPPGTGKTSTILA ++LY P S VLELNASD+RGI IVR ++ NFA
Sbjct: 9 LPHLLFYGPPGTGKTSTILACARQLYSPQQFKSMVLELNASDDRGIGIVRGQILNFA--- 65
Query: 115 VSKPSESDLANYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRII 174
C +K+IILDEAD+MT DAQ+ALRR +E Y+ RFC+ICNY+++II
Sbjct: 66 -------STRTIFCDTFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKII 118
Query: 175 DPLASRCSKFRFKALDSSNALSRLQFIANEESLKYEDGVLERILDISQGDLRKAITLLQS 234
L SRC++FRF L + RL+ I E+++ + +L +++GD+RK + +LQS
Sbjct: 119 PALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDGKRALLTLAKGDMRKVLNVLQS 178
Query: 235 AAKIVLQNDDANTITLKHANELSGTIHEEILQDLINVIKGKDLNKIIDKVQEFVNQGWSA 294
+ + + + + L I E+IL+ L++ +D K ++ + +G +
Sbjct: 179 TV-MAFDTVNEDNVYMCVGYPLRQDI-EQILKALLSGSSLEDSFKTVESAK--YARGLAL 234
Query: 295 ASALTQLHEYYIKNESYDTEFKNKVSWLLFDSDSKLTNGASEHLQ 339
+T+LH + ++ E NK+ L + +L G +E Q
Sbjct: 235 EDIITELHLFVMRLE-LPMSVMNKLIVKLAQIEERLAKGCTEVAQ 278
>ECU02g0290 [L] KOG0990 Replication factor C subunit RFC5
Length = 305
Score = 171 bits (433), Expect = 1e-42
Identities = 101/244 (41%), Positives = 150/244 (61%), Gaps = 24/244 (9%)
Query: 26 EKYRPRKLDDVAAQDHAVTVLKRTLQTANLPHMLFYGPPGTGKTSTILALTKELYGPHLS 85
EKYRP L +V V+ L+ +P+MLFYGPPGTGKT++I A+ +L
Sbjct: 7 EKYRPGSLLEVVGNREVVSSLQSISSAGRIPNMLFYGPPGTGKTTSIRAIAN-----NLP 61
Query: 86 NSRVLELNASDERGISIVREKVKNFARLTVSKPSESDLANYPCPPYKIIILDEADSMTAD 145
+ VLELNASDERGI+ VRE +K FA T SK K++ILDEAD M+ D
Sbjct: 62 RTSVLELNASDERGIATVRETIKEFAS-TYSKTM------------KLVILDEADMMSRD 108
Query: 146 AQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDSSNALSRLQFIANEE 205
AQ+ALRR +E +S TRFCLI N++ +II P+ SRC+KFRF + + +R++ I E
Sbjct: 109 AQNALRRIIEDFSANTRFCLIANHLRKIISPILSRCTKFRFGPIGDTE--NRIEEICKRE 166
Query: 206 SLKYEDGVLERILDISQGDLRKAITLLQSAAKIVLQNDDANTITLKHANELS-GTIHEEI 264
S+KY ++ + IS GD+RKA+ +Q + + Q D++N ++ N ++ +++EE+
Sbjct: 167 SIKYTPEGIKAVSRISMGDMRKAVNDIQGISASLGQVDESN---VRRFNGIAPSSVYEEL 223
Query: 265 LQDL 268
++L
Sbjct: 224 FRNL 227
>ECU09g1330 [L] KOG0991 Replication factor C subunit RFC2
Length = 309
Score = 162 bits (410), Expect = 7e-40
Identities = 91/260 (35%), Positives = 147/260 (56%), Gaps = 32/260 (12%)
Query: 25 VEKYRPRKLDDVAAQDHAVTVLKRTLQTANLPHMLFYGPPGTGKTSTILALTKELYGPHL 84
V KY+P ++ D+ + + ++ +++ ++PH+LF GPPGTGKT+ L + L G
Sbjct: 5 VNKYQPSEIQDIVGNEATMELVSLMIESRDMPHLLFTGPPGTGKTTCAKILARRLLG--- 61
Query: 85 SNSRVLELNASDERGISIVREKVKNFARLTVSKPSESDLANYPCPPYKIIILDEADSMTA 144
+ +LELNASDERGI VR +K+FA+ V K E +KIIILDEADSMT
Sbjct: 62 NKEGLLELNASDERGIDTVRTTIKSFAQRRV-KDCE----------FKIIILDEADSMTT 110
Query: 145 DAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDSSNALSRLQFIANE 204
AQ A+RR ME +S RF LICN T+I +P+ SRC+ RF ++ S L RL+ I+
Sbjct: 111 TAQQAMRRVMEIHSSECRFILICNVFTKIFEPIQSRCAILRFDRIEQSVILKRLKEISEG 170
Query: 205 ESLKYEDGVLERILDISQGDLRKAITLLQSAAKIVLQNDDANTITLKHANELSGTIHEEI 264
E ++ L+ ++++S GD+R+++ +LQ+ GT+ ++
Sbjct: 171 EGIRITAEALDLVVELSDGDMRQSLNILQACI------------------NSPGTVDQDY 212
Query: 265 LQDLINVIKGKDLNKIIDKV 284
+ +I + K + K++ ++
Sbjct: 213 IIKIIGLPSPKRIEKVLQRL 232
>ECU02g0680 [L] KOG0989 Replication factor C subunit RFC4
Length = 283
Score = 147 bits (370), Expect = 3e-35
Identities = 106/328 (32%), Positives = 168/328 (50%), Gaps = 48/328 (14%)
Query: 24 WVEKYRPRKLDDVAAQDHAVTVLKRTLQTANLPHMLFYGPPGTGKTSTILALTKELYGPH 83
W EKYRP+ D +H +L+ + + P++L YGPPGTGKT+ H
Sbjct: 3 WTEKYRPKSTDAFEGPEHLKNILRNSSGRGH-PNLLLYGPPGTGKTTFA----------H 51
Query: 84 LSNSRVLELNASDERGISIVREKVKNFARLTVSKPSESDLANYPCPPYKIIILDEADSMT 143
L S+ LELNASDERGIS++REK+K +A T+ K K +ILDE +++T
Sbjct: 52 LLASQKLELNASDERGISVIREKIKVYAS-TLGKD-------------KTVILDECENLT 97
Query: 144 ADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDSSNALSRLQFIAN 203
+DAQ LRR +E S TRF I NY ++II PL SR +F +S L+ I +
Sbjct: 98 SDAQHCLRRVIED-SVNTRFIFITNYPSKIIGPLRSRLVSVKFTPTES----KILENIGS 152
Query: 204 EESLKYEDGVLERILDISQGDLRKAITLLQSAAKIVLQNDDANTITLKHANELSGTIHEE 263
+E L Y+ + RIL + DLR+AI +LQ A + + ++ A
Sbjct: 153 KEGLGYDKELYHRILKLCGNDLRRAINVLQGVAPL-------GSFCIEEA-------VGA 198
Query: 264 ILQDLINVIKGKDLNKIIDKVQEFVNQGWSAASALTQLHEYYIKNESYDTEFKNKVSWLL 323
+ Q +++ D ++++ V+EF+ +G+SA + QL +++ E +S L
Sbjct: 199 VPQKTVDMFWEVDRPRVVEYVREFLREGYSALQLIHQLAGSSKGSDAQSAELHLALSLL- 257
Query: 324 FDSDSKLTNGASEHLQMLNLAMKVSQLY 351
+ K +G S+ L + NL + +++
Sbjct: 258 ---EEKSVSGCSDELVLYNLLGRKIEIF 282
>SPAPJ698.01c [L] KOG0990 Replication factor C subunit RFC5
Length = 142
Score = 134 bits (336), Expect = 3e-31
Identities = 69/136 (50%), Positives = 92/136 (66%), Gaps = 11/136 (8%)
Query: 17 GKGQAKPWVEKYRPRKLDDVAAQDHAVTVLKRTLQTANLPHMLFYGPPGTGKTSTILALT 76
G PWVEKYRP L+DV + ++ L++ + + +PHMLFYGPPGTGKTSTILA
Sbjct: 18 GSESTLPWVEKYRPANLEDVVSHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILACA 77
Query: 77 KELYGPHLSNSRVLELNASDERGISIVREKVKNFARLTVSKPSESDLANYPCPPYKIIIL 136
+++YGP+ N +++ELNASD+RGI VRE++KNFA S +K+IIL
Sbjct: 78 RKIYGPNYRN-QLMELNASDDRGIDAVREQIKNFASTRQIFAS----------TFKMIIL 126
Query: 137 DEADSMTADAQSALRR 152
DEAD+MT AQ+ALRR
Sbjct: 127 DEADAMTLAAQNALRR 142
>At5g27740 [DL] KOG2035 Replication factor C subunit RFC3
Length = 354
Score = 128 bits (321), Expect = 1e-29
Identities = 78/239 (32%), Positives = 123/239 (50%), Gaps = 35/239 (14%)
Query: 24 WVEKYRPRKLDDVAAQDHAVTVLKRTLQTANLPHMLFYGPPGTGKTSTILALTKELYGPH 83
WV+KYRP+ LD V + LK+ + + PH+LFYGP G+GK + I+AL K++YG
Sbjct: 3 WVDKYRPKSLDKVIVHEDIAQKLKKLVSEQDCPHLLFYGPSGSGKKTLIMALLKQIYGAS 62
Query: 84 --------------------------LSNSRVLELNASDE--RGISIVREKVKNFARLTV 115
LS++ +EL SD + IV+E +K A+
Sbjct: 63 AEKVKVENRAWKVDAGSRTIDLELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAK--- 119
Query: 116 SKPSESDLANYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIID 175
++P ++ YK+++L+E D ++ +AQ +LRRTME YS R L CN +++ +
Sbjct: 120 NRPIDTKGKK----GYKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTE 175
Query: 176 PLASRCSKFRFKALDSSNALSRLQFIANEESLKYEDGVLERILDISQGDLRKAITLLQS 234
+ SRC R A + L+F+A +ESL+ G RI + S LR+AI L++
Sbjct: 176 AIKSRCLNVRINAPSQEEIVKVLEFVAKKESLQLPQGFAARIAEKSNRSLRRAILSLET 234
>YBR087w [DL] KOG2035 Replication factor C subunit RFC3
Length = 354
Score = 120 bits (300), Expect = 4e-27
Identities = 100/351 (28%), Positives = 170/351 (47%), Gaps = 46/351 (13%)
Query: 24 WVEKYRPRKLDDVAAQDHAVTVLKRTL-QTANLPHMLFYGPPGTGKTSTILALTKELYGP 82
WV+KYRP+ L+ ++ + LK Q +LPH+L YGP GTGK + +AL + ++GP
Sbjct: 4 WVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGP 63
Query: 83 HL------------SNSRVLELNA-SDERGISIVREKVKNFARLTVSK------------ 117
+ +++R LELN S + I + N R+ + +
Sbjct: 64 GVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVD 123
Query: 118 --PSESDLANYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIID 175
S+ LA+ YK +I++EA+S+T DAQ+ALRRTME YS R ++C+ ++ II
Sbjct: 124 FQDSKDGLAHR----YKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIA 179
Query: 176 PLASRCSKFRFKALDSSNALSRLQFIANEESLKYE-DGVLERILDISQGDLRKAITLLQS 234
P+ SRC R A S + L + E ++ E +L+RI S G+LR ++ +L+S
Sbjct: 180 PIKSRCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLES 239
Query: 235 AAKIVLQNDDANTITLKHANELSGTIHEEILQDLI-NVIKGKDLNKIID---KVQEFVNQ 290
A N + LK ++ + ++ L ++K + +N +I+ + + +
Sbjct: 240 MAL-------NNELALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAH 292
Query: 291 GWSAASALTQLHEYYIKNESYDTEFKNKVSWL--LFDSDSKLTNGASEHLQ 339
A L +L + E+ +T K+ + +FD L N A HL+
Sbjct: 293 CIPANIILKELTFSLLDVETLNTTNKSSIIEYSSVFDERLSLGNKAIFHLE 343
>ECU10g0780i [DL] KOG2035 Replication factor C subunit RFC3
Length = 354
Score = 120 bits (300), Expect = 4e-27
Identities = 76/234 (32%), Positives = 124/234 (52%), Gaps = 29/234 (12%)
Query: 24 WVEKYRPRKLDDVAAQDHAVTVLKR-TLQTANLPHMLFYGPPGTGKTSTILALTKELYGP 82
W+EKYRPR D++ ++ A +LK TL+T +PHM+ +G G GK + +L L LYG
Sbjct: 3 WIEKYRPRSFDEMIGREEASGLLKSYTLET--IPHMIVHGRSGHGKKTVLLCLVNHLYGS 60
Query: 83 H----------LSNSRVLELN--ASDE-----------RGISIVREKVKNFARLTVSKPS 119
LS ++ +E++ SDE ++++ +K + +KP
Sbjct: 61 IPEMKIRTTEVLSGAKKIEVSYMESDEYVEISPSRYGYHDRAVIQSIIKEMGQ---TKPI 117
Query: 120 ESDLANYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLAS 179
S LA P K++++ A+ +T +AQ+ALRRT+E YSGV R L+CN ++R+I+P+ S
Sbjct: 118 LSMLARSRRAPIKLVVITSAEELTLEAQAALRRTIEVYSGVLRVVLVCNELSRLIEPIRS 177
Query: 180 RCSKFRFKALDSSNALSRLQFIANEESLKYEDGVLERILDISQGDLRKAITLLQ 233
RC R + S + I +E+ L I S GD+R+A+ +L+
Sbjct: 178 RCFFLRIPGFSDEDVTSNMCRILEKENYTVPKETLVEICRESGGDMRRALCVLE 231
>Hs4506489 [DL] KOG2035 Replication factor C subunit RFC3
Length = 356
Score = 110 bits (276), Expect = 2e-24
Identities = 69/236 (29%), Positives = 107/236 (45%), Gaps = 32/236 (13%)
Query: 24 WVEKYRPRKLDDVAAQDHAVTVLKRTLQTANLPHMLFYGPPGTGKTSTILALTKELYGPH 83
WV+KYRP L + L+ +Q + PH+L YGP G GK + I+ + +ELYG
Sbjct: 4 WVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVG 63
Query: 84 LSNSRV-----------------------LELNASDERGIS--IVREKVKNFARLTVSKP 118
+ R+ LE+N SD +++E +K A+
Sbjct: 64 VEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQ------ 117
Query: 119 SESDLANYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLA 178
L +K+++L E D +T DAQ ALRRTME Y R L CN +++I P+
Sbjct: 118 -SQQLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIR 176
Query: 179 SRCSKFRFKALDSSNALSRLQFIANEESLKYEDGVLERILDISQGDLRKAITLLQS 234
SRC R A + L + +E L + R+ + S +LRKA+ + ++
Sbjct: 177 SRCLAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEA 232
>CE05396 [DL] KOG2035 Replication factor C subunit RFC3
Length = 354
Score = 110 bits (276), Expect = 2e-24
Identities = 82/283 (28%), Positives = 135/283 (46%), Gaps = 27/283 (9%)
Query: 24 WVEKYRPRKLDDVAAQDHAVTVLK--RTLQTANLPHMLFYGPPGTGKTSTILALTKELYG 81
WV+KYRP+ L D+ + + L +PH+LF GP G GK + I L +ELYG
Sbjct: 4 WVDKYRPKDLLGKDGVDYHIEQANHLKFLSADCMPHLLFCGPSGAGKKTRIKCLLRELYG 63
Query: 82 PHL-------------SNSRVLELNASDERGISIVREKVKNFARLTVSK-----PSESDL 123
+ SN ++ S I + V + R+ V S +
Sbjct: 64 VGVEKTQLIMKSFTSPSNKKLEIQTVSSNYHIEMTPSDVGIYDRVVVQDLVKEMAQTSQI 123
Query: 124 ANYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSK 183
+ +K+++L EADS+T DAQ LRRTME Y+ + L C ++RII+PL SRC
Sbjct: 124 ESTSQRSFKVVVLCEADSLTRDAQHGLRRTMEKYANNCKIVLSCESLSRIIEPLQSRCII 183
Query: 184 FRFKALDSSNALSRLQFIANEESLKYEDGVLERILDISQGDLRKAITLLQSAAKIVLQND 243
A + L+ + ES + VL++I++ S+G+LR+AI L+ A ++ ++
Sbjct: 184 INVPAPTDEDVTKVLRKVIERESFLLPENVLQKIVEKSEGNLRRAI-LMTEALRMENESG 242
Query: 244 DANTITLKHANELSGTIHEEILQDLINVIKGKDLNKIIDKVQE 286
A ++ + E +Q+ +I K + ++ KV+E
Sbjct: 243 VAESVVIPVPE------WEIYIQETARLILQKQSSDMLLKVRE 279
>SPBC83.14c [DL] KOG2035 Replication factor C subunit RFC3
Length = 358
Score = 108 bits (270), Expect = 1e-23
Identities = 72/231 (31%), Positives = 115/231 (49%), Gaps = 22/231 (9%)
Query: 24 WVEKYRPRKLDDVAAQDHAVTVLKRTLQTANLPHMLFYGPPGTGKTSTILALTKELYGPH 83
W+++YRP+ L + L T PH+L YGP G GK + ++A+ +ELYGP
Sbjct: 3 WLDQYRPKTLASLDYHKQLSERLISLSSTNEFPHLLVYGPSGAGKKTRVVAILRELYGPG 62
Query: 84 LS------------NSRVLELN-ASDERGISIVREKVKNFARLT-------VSKPSESDL 123
+S+ L++N S + I V N+ R+ V++ ++ DL
Sbjct: 63 SEKLKIDQRTFLTPSSKKLQINIVSSLHHLEITPSDVGNYDRVIMQELLKDVAQSAQVDL 122
Query: 124 ANYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSK 183
+K+++++ AD +T DAQ+ALRRTME YS R LI N ++II+P+ SR
Sbjct: 123 QAKKI--FKVVVINVADELTRDAQAALRRTMEKYSNNIRLILIANSTSKIIEPIRSRTLM 180
Query: 184 FRFKALDSSNALSRLQFIANEESLKYEDGVLERILDISQGDLRKAITLLQS 234
R A + + I + L+ D +L I + +LRKAI LL++
Sbjct: 181 VRVAAPTPEEIILVMSKILTAQGLEAPDSLLNNIANNCDRNLRKAILLLET 231
>7297827 [DL] KOG2035 Replication factor C subunit RFC3
Length = 318
Score = 94.4 bits (233), Expect = 2e-19
Identities = 89/323 (27%), Positives = 144/323 (44%), Gaps = 49/323 (15%)
Query: 59 LFYGPPGTGKTSTILALTKELYGPHL-------------SNSRV----------LELNAS 95
+FYGP G GK + I+ L +E+YG + SN +V LE+N S
Sbjct: 1 MFYGPSGAGKKTRIMCLLREMYGSGVERLRSETMTFTTPSNRKVEVMTVSSNYHLEVNPS 60
Query: 96 DERGI--SIVREKVKNFAR---LTVSKPSESDLANYPCPPYKIIILDEADSMTADAQSAL 150
D ++V + +K A+ + +S E +K+I++ E D +T DAQ AL
Sbjct: 61 DAGMYDRTVVIDLIKQVAQTHQIEISGQRE----------FKVIVISEGDELTKDAQHAL 110
Query: 151 RRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDSSNALSRLQFIANEESLKYE 210
RRTME Y R + N +RII + SRC R A + + +S LQ E L
Sbjct: 111 RRTMEKYVATCRIIISVNSTSRIIPAIRSRCLGIRVAAPNETEIVSILQNTCKREGLALP 170
Query: 211 DGVLERILDISQGDLRKAITLLQSAAKIVLQNDDANTITLKHANELSGTIH-EEILQDLI 269
+ +R++D S+ +LR+A+ +L+ AAK+ AN + +L + E +I
Sbjct: 171 VELAKRVVDKSERNLRRALLMLE-AAKVAKAPFTAN----QEIPDLDWQVFLRETASQII 225
Query: 270 NVIKGKDLNKIIDKVQEFVNQGWSAASALTQLHEYYIKNESYDTEFKNKVSWLLFDSDSK 329
+ L KI +++ E + QG L E + N D K K + + +
Sbjct: 226 SEQTPAKLEKIRERLYELLTQGVPPNLIFRGLVEQLVNN--CDMSIKAKTLEFATEYEHR 283
Query: 330 LTNGASEHLQMLNLAMKVSQLYN 352
+ +GA + +L V+Q N
Sbjct: 284 MQSGAK---HIFHLEAFVAQFMN 303
>SPAC27E2.10c [L] KOG0990 Replication factor C subunit RFC5
Length = 224
Score = 92.4 bits (228), Expect = 9e-19
Identities = 43/104 (41%), Positives = 66/104 (63%)
Query: 131 YKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALD 190
+K+IILDEAD+MT AQ+ALRR +E Y+ RFC+ICNY+ +I + SRC++FRF+ L
Sbjct: 3 FKMIILDEADAMTLAAQNALRRVIEKYTKNVRFCIICNYINKISPAIQSRCTRFRFQPLP 62
Query: 191 SSNALSRLQFIANEESLKYEDGVLERILDISQGDLRKAITLLQS 234
+ + E + +L +S+GD+RKA+ +LQ+
Sbjct: 63 PKEIEKTVDHVIQSEHCNIDPDAKMAVLRLSKGDMRKALNILQA 106
>ECU05g1530 [L] KOG1968 Replication factor C subunit RFC1 (large subunit)
Length = 568
Score = 92.4 bits (228), Expect = 9e-19
Identities = 71/223 (31%), Positives = 101/223 (44%), Gaps = 17/223 (7%)
Query: 17 GKGQAKPWVEKYRPRKLDDVAAQDHAVTVLKRTLQ-TANLPHMLFYGPPGTGKTSTILAL 75
G + W EKYRP K D++ V L+ LQ +L G PG GKT+T +
Sbjct: 106 GSASSGVWSEKYRPSKRDEIVGNQGIVKQLEDYLQGRTKYKAVLLSGQPGIGKTTTAHVV 165
Query: 76 TKELYGPHLSNSRVLELNASDERGISIVREKVKNF-ARLTVSKPSESDLANYPCPPYKII 134
K L V+E NASD R + KVK F + ++ +P S K++
Sbjct: 166 CKSL------GLNVIEFNASDVRSKLEISNKVKAFVSSQSILRPGSSKS--------KVL 211
Query: 135 ILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRI-IDPLASRCSKFRFKALDSSN 193
I+DE D M++D V ICN I L+S C RF+ D+
Sbjct: 212 IMDEVDGMSSDRGGIPELISIVKETVVPIICICNDRNNPKIRTLSSYCLDLRFRKPDARQ 271
Query: 194 ALSRLQFIANEESLKYEDGVLERILDISQGDLRKAITLLQSAA 236
LSR++ I + E K DG+L I+ GD+R I+++QS A
Sbjct: 272 ILSRVKQILDMEGKKIPDGLLNEIISRGAGDIRYTISMVQSIA 314
>At1g14460 [L] KOG0989 Replication factor C subunit RFC4
Length = 1102
Score = 90.1 bits (222), Expect = 4e-18
Identities = 80/300 (26%), Positives = 136/300 (44%), Gaps = 44/300 (14%)
Query: 26 EKYRPRKLDDVAAQDHAVTVLKRTLQTANLPHM-LFYGPPGTGKTSTILALT-------- 76
+KY+P D++ Q V L ++ + H+ LF GP GTGKTST L+
Sbjct: 426 QKYKPMFFDELIGQSIVVQSLMNAVKKGRVAHVYLFQGPRGTGKTSTARILSAALNCDVV 485
Query: 77 ----------KELYGPHLSNSR-VLELNASDERGISIVREKVKNFARLTVSKPSESDLAN 125
KE L SR +LEL+A + G VR +K L P S
Sbjct: 486 TEEMKPCGYCKECSDYMLGKSRDLLELDAGKKNGAEKVRYLLKKLLTLA---PQSSQR-- 540
Query: 126 YPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIID----PLASRC 181
YK+ ++DE + + +L + +E + + +F +C +T +D + SRC
Sbjct: 541 -----YKVFVIDECHLLPSRTWLSLLKFLE--NPLQKFVFVC--ITTDLDNVPRTIQSRC 591
Query: 182 SKFRFKALDSSNALSRLQFIANEESLKYEDGVLERILDISQGDLRKAITLLQSAAKIVLQ 241
K+ F + + + RL+ IA++E+L E L+ I + G LR A T+L+ + +
Sbjct: 592 QKYIFNKVRDGDIVVRLRKIASDENLDVESQALDLIALNADGSLRDAETMLEQLSLM--- 648
Query: 242 NDDANTITLKHANELSGTIHEEILQDLINVIKGKDLNKIIDKVQEFVNQGWSAASALTQL 301
IT+ NEL G + ++ L +L+ + D + + K +E ++ G ++QL
Sbjct: 649 ---GKRITVDLVNELVGVVSDDKLLELLELALSSDTAETVKKARELLDLGADPILMMSQL 705
>At1g24290 [L] KOG2028 ATPase related to the helicase subunit of the Holliday
junction resolvase
Length = 525
Score = 89.0 bits (219), Expect = 1e-17
Identities = 80/294 (27%), Positives = 134/294 (45%), Gaps = 35/294 (11%)
Query: 8 KKQKLNPSDGKGQAKPWVEKYRPRKLDDVAAQDHAVT---VLKRTLQTANLPHMLFYGPP 64
K+ KL+ S + Q +P E+ RPR LDDV QDH ++ +L+ +++ LP ++F+GPP
Sbjct: 88 KRHKLSSSSHR-QHQPLSERMRPRTLDDVVGQDHLLSPSSLLRSAVESNRLPSIVFWGPP 146
Query: 65 GTGKTSTILALTKELYGPHLSNSRVLELNASDERGISIVREKVKNFARLTVSKPSESDLA 124
GTGKTS +L P L R + L+A G+ VR+ V++ RL + +
Sbjct: 147 GTGKTSIAKSLINSSKDPSL--YRFVSLSAVTS-GVKDVRDAVESAKRLNLEGRKRT--- 200
Query: 125 NYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKF 184
++ +DE Q +E S + N +I PL SRC
Sbjct: 201 --------VLFMDEVHRFNKSQQDTFLPVIEDGSILFIGATTENPSFHLITPLLSRCRVL 252
Query: 185 RFKALDSSNALSRLQFIANE------ESLKYEDGVLERILDISQGDLRKAITLLQSAAKI 238
L ++ + L+ ++ S++ +D V+E + + GD R A+ L+ +A +
Sbjct: 253 TLNPLKPNHVETLLRRAVDDSERGLPNSVEVDDSVIEFLANNCDGDARVALNALEISATM 312
Query: 239 ---------VLQNDDA-NTITLKH-ANELSGTIHEEILQDLINVIKGKDLNKII 281
V+ DDA + KH A + +G H ++ L ++G D N I
Sbjct: 313 ATTRAGTDAVVSIDDAKEALQCKHLAYDKAGEQHYNLISALHKSMRGGDANAAI 366
>At2g02480 [L] KOG0989 Replication factor C subunit RFC4
Length = 1153
Score = 85.1 bits (209), Expect = 1e-16
Identities = 76/318 (23%), Positives = 133/318 (40%), Gaps = 44/318 (13%)
Query: 26 EKYRPRKLDDVAAQDHAVTVLKRTLQTANL-PHMLFYGPPGTGKTSTILALTKELYGPHL 84
+KYRP +++ Q V L ++ + + P LF GP GTGKTST + L
Sbjct: 453 QKYRPMFFEELIGQSIVVQSLMNAVKRSRIAPVYLFQGPRGTGKTSTARIFSAALNCVAT 512
Query: 85 SNSRVL------------------ELNASDERGISIVREKVKNFARLTVSKPSESDLANY 126
+ EL+ ++++G VR +KN + P S +
Sbjct: 513 EEMKPCGYCKECNDFMSGKSKDFWELDGANKKGADKVRYLLKNLPTIL---PRNSSM--- 566
Query: 127 PCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRF 186
YK+ ++DE + + + + +E F I + + + SRC KF F
Sbjct: 567 ----YKVFVIDECHLLPSKTWLSFLKFLENPLQKVVFIFITTDLENVPRTIQSRCQKFLF 622
Query: 187 KALDSSNALSRLQFIANEESLKYEDGVLERILDISQGDLRKAITLLQSAAKIVLQNDDAN 246
L S+ + RL+ IA++E+L + L+ I + G LR A T+L+ + +
Sbjct: 623 DKLKDSDIVVRLKKIASDENLDVDLHALDLIAMNADGSLRDAETMLEQLSLL------GK 676
Query: 247 TITLKHANELSGTIHEEILQDLINVIKGKDLNKIIDKVQEFVNQGWSAASALTQLHE--- 303
IT NEL G + +E L +L+ + D + + + +E ++ G ++QL
Sbjct: 677 RITTALVNELVGVVSDEKLLELLELALSSDTAETVKRARELLDLGADPIVLMSQLASLIM 736
Query: 304 ------YYIKNESYDTEF 315
Y + +E Y F
Sbjct: 737 DIIAGTYKVVDEKYSNAF 754
>At4g24790 [L] KOG0989 Replication factor C subunit RFC4
Length = 815
Score = 83.2 bits (204), Expect = 5e-16
Identities = 76/331 (22%), Positives = 149/331 (44%), Gaps = 20/331 (6%)
Query: 26 EKYRPRKLDDVAAQDHAVTVLKRTLQTANLPHM-LFYGPPGTGKTSTILALTKELYG-PH 83
+K+RP+ D++ Q+ V L T+ + + LF+GP GTGKTST L
Sbjct: 243 QKFRPKSFDELVGQEVVVKCLLSTILRGRITSVYLFHGPRGTGKTSTSKIFAAALNCLSQ 302
Query: 84 LSNSRVLELNASDERGISIVREKVKNFARLTVSKPS--ESDLANYPCPP----YKIIILD 137
++SR L + + S V +++PS S + + PP +K+ I+D
Sbjct: 303 AAHSRPCGLCSECKSYFSGRGRDVMETDSGKLNRPSYLRSLIKSASLPPVSSRFKVFIID 362
Query: 138 EADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDSSNALSR 197
E + + L +++ +S + F L+ + + ++ + SR K+ F + ++ ++
Sbjct: 363 ECQLLCQETWGTLLNSLDNFSQHSVFILVTSELEKLPRNVLSRSQKYHFSKVCDADISTK 422
Query: 198 LQFIANEESLKYEDGVLERILDISQGDLRKAITLLQSAAKIVLQNDDANTITLKHANELS 257
L I EE + ++ G ++ I S G LR A +L + + IT A +L
Sbjct: 423 LAKICIEEGIDFDQGAVDFIASKSDGSLRDAEIMLDQLSLL------GKRITTSLAYKLI 476
Query: 258 GTIHEEILQDLINVIKGKDLNKIIDKVQEFVNQGWSAASALTQLHEYYIKNESYDTEFKN 317
G + ++ L DL+++ D + + + +E + ++QL + + +++ +
Sbjct: 477 GVVSDDELLDLLDLAMSSDTSNTVIRARELMRSKIDPMQLISQLANVIMDIIAGNSQESS 536
Query: 318 KVSWLLFDSDSKLTNGAS-EHLQMLNLAMKV 347
+ L F LT S E +Q L A+K+
Sbjct: 537 SATRLRF-----LTRHTSEEEMQKLRNALKI 562
>At5g45720 [L] KOG0989 Replication factor C subunit RFC4
Length = 900
Score = 79.0 bits (193), Expect = 1e-14
Identities = 67/291 (23%), Positives = 126/291 (43%), Gaps = 28/291 (9%)
Query: 24 WVEKYRPRKLDDVAAQDHAVTVLKRTLQTANLPHM-LFYGPPGTGKTSTILALTKELYGP 82
+ +KY PR D+ Q+ V L + + + +F+GP GTGKTS + L
Sbjct: 345 FTQKYAPRTFRDLLGQNLVVQALSNAIAKRRVGLLYVFHGPNGTGKTSCARVFARALNCH 404
Query: 83 HLSNSRVLELNAS----DERGISIVREK--VKNFA------RLTVSKPSESDLANYPCPP 130
S+ + +S D+ +RE VK+F + + + + L
Sbjct: 405 STEQSKPCGVCSSCVSYDDGKNRYIREMGPVKSFDFENLLDKTNIRQQQKQQL------- 457
Query: 131 YKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALD 190
++I D+ D+M+ D + L + ++ F L+C+ + + + SRC KF F L
Sbjct: 458 --VLIFDDCDTMSTDCWNTLSKIVDRAPRRVVFVLVCSSLDVLPHIIVSRCQKFFFPKLK 515
Query: 191 SSNALSRLQFIANEESLKYEDGVLERILDISQGDLRKAITLLQSAAKIVLQNDDANTITL 250
+ + LQ IA++E + + L+ + S G LR A L+ + + I++
Sbjct: 516 DVDIIDSLQLIASKEEIDIDKDALKLVASRSDGSLRDAEMTLEQLSLL------GTRISV 569
Query: 251 KHANELSGTIHEEILQDLINVIKGKDLNKIIDKVQEFVNQGWSAASALTQL 301
E+ G I +E L DL+++ D + ++ + G + ++QL
Sbjct: 570 PLVQEMVGLISDEKLVDLLDLALSADTVNTVKNLRIIMETGLEPLALMSQL 620
>YOR217w [L] KOG1968 Replication factor C subunit RFC1 (large subunit)
Length = 861
Score = 74.7 bits (182), Expect = 2e-13
Identities = 69/257 (26%), Positives = 110/257 (41%), Gaps = 33/257 (12%)
Query: 22 KPWVEKYRPRKLDDVAAQDHAVTVLKRTL------QTANLPHM-----------LFYGPP 64
K W KY P L V +V LK L + + H + YGPP
Sbjct: 296 KLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPP 355
Query: 65 GTGKTSTILALTKELYGPHLSNSRVLELNASDERGISIVREKVKNFA--RLTVSKPSESD 122
G GKT+ + +EL +LE NASD R +++ VKN V ++
Sbjct: 356 GIGKTTAAHLVAQEL------GYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNE 409
Query: 123 LANYPCPPYKIIILDEADSMTADAQSALRRTMETYSGV-TRFCLICNYVTRI-IDPLASR 180
A + +II+DE D M+ + + + + T LICN + P
Sbjct: 410 EAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRPFDRV 469
Query: 181 CSKFRFKALDSSNALSRLQFIANEESLKYEDGVLERILDISQGDLRKAITLLQSAAKIVL 240
C +F+ D+++ SRL IA E K + V++R++ ++GD+R+ I LL +
Sbjct: 470 CLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLSTI----- 524
Query: 241 QNDDANTITLKHANELS 257
+ TI ++ NE+S
Sbjct: 525 -STTTKTINHENINEIS 540
>At4g18820 [L] KOG0989 Replication factor C subunit RFC4
Length = 1057
Score = 69.7 bits (169), Expect = 6e-12
Identities = 68/298 (22%), Positives = 134/298 (44%), Gaps = 17/298 (5%)
Query: 20 QAKPWVEKYRPRKLDDVAAQDHAVTVLKRTLQTANLPHM-LFYGPPGTGKTSTILALTKE 78
Q + EKY P+ D+ Q+ V L + L + +F+GP GTGKTS +
Sbjct: 429 QHQSLTEKYTPKTFRDLLGQNLVVQALSNAVARRKLGLLYVFHGPNGTGKTSCARIFARA 488
Query: 79 LYGPHLSNSR---VLELNASDERGISI-VRE--KVKNFARLTVSKPSESDLANYPCPPYK 132
L + + S + G S +RE V N+ + + ++ P +
Sbjct: 489 LNCHSMEQPKPCGTCSSCVSHDMGKSWNIREVGPVGNYDFEKIMDLLDGNVMVSSQSP-R 547
Query: 133 IIILDEADSMTADAQSALRRTMETYSGV-TRFCLICNYVTRIIDPLASRCSKFRFKALDS 191
+ I D+ D++++D +AL + ++ + F L+C+ + + + SRC KF F L
Sbjct: 548 VFIFDDCDTLSSDCWNALSKVVDRAAPRHVVFILVCSSLDVLPHVIISRCQKFFFPKLKD 607
Query: 192 SNALSRLQFIANEESLKYEDGVLERILDISQGDLRKAITLLQSAAKI-------VLQNDD 244
++ + LQ+IA++E ++ + L+ I S G LR A L+ + + ++Q
Sbjct: 608 ADIVYSLQWIASKEEIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 667
Query: 245 ANTITLKHANELS-GTIHEEILQDLINVIKGKDLNKIIDKVQEFVNQGWSAASALTQL 301
+ ++ H +L G + +E L DL+++ D + ++ + + ++QL
Sbjct: 668 SIVLSHHHIKQLKVGLVSDEKLVDLLDLALSADTVNTVKNLRTIMETSVEPLALMSQL 725
>SPBC23E6.07c [L] KOG1968 Replication factor C subunit RFC1 (large subunit)
Length = 934
Score = 67.8 bits (164), Expect = 2e-11
Identities = 67/251 (26%), Positives = 108/251 (42%), Gaps = 39/251 (15%)
Query: 24 WVEKYRPRKLDDVAAQDHAVTVLKRTLQ--------TANLPH---------MLFYGPPGT 66
W KY P L D+ V L++ LQ N P +L GPPG
Sbjct: 361 WTSKYAPTSLKDICGNKGVVQKLQKWLQDYHKNRKSNFNKPGPDGLGLYKAVLLSGPPGI 420
Query: 67 GKTSTILALTKELYGPHLSNSRVLELNASDERGISIVREKV------KNFARLTVSKPSE 120
GKT+ + K L VLELNASD R ++ E++ ++ A +K +
Sbjct: 421 GKTTAAHLVAK------LEGYDVLELNASDTRSKRLLDEQLFGVTDSQSLAGYFGTKANP 474
Query: 121 SDLANYPCPPYKIIILDEADSMTADAQSALRR-TMETYSGVTRFCLICNYVTRI-IDPLA 178
D+A ++I+DE D M++ + + + M + ICN + PL
Sbjct: 475 VDMAKSRL----VLIMDEIDGMSSGDRGGVGQLNMIIKKSMIPIICICNDRAHPKLRPLD 530
Query: 179 SRCSKFRFKALDSSNALSRLQFIANEESLKYEDGVLERILDISQGDLRKAITLLQ----S 234
RF+ D+++ SR+ IA E LK +++++ +Q D+R+ I LL S
Sbjct: 531 RTTFDLRFRRPDANSMRSRIMSIAYREGLKLSPQAVDQLVQGTQSDMRQIINLLSTYKLS 590
Query: 235 AAKIVLQNDDA 245
+++ QN A
Sbjct: 591 CSEMTPQNSQA 601
>YNL218w [L] KOG2028 ATPase related to the helicase subunit of the Holliday
junction resolvase
Length = 587
Score = 58.2 bits (139), Expect = 2e-08
Identities = 60/237 (25%), Positives = 96/237 (40%), Gaps = 43/237 (18%)
Query: 23 PWVEKYRPRKLDDVAAQDHAVT----VLKRTLQTANLPHMLFYGPPGTGKTSTILALTKE 78
P EK RP++L D Q H ++ L + ++ +P M+ +GPPG GKTS LTK
Sbjct: 134 PLSEKLRPKELRDYVGQQHILSQDNGTLFKYIKQGTIPSMILWGPPGVGKTSLARLLTKT 193
Query: 79 LYGP----------HLSNSRVLELNASDERGISIVREKVKNFARLTVSKPSESDLANYPC 128
+ + + N + RGI EK K +LT +
Sbjct: 194 ATTSSNESNVGSRYFMIETSATKANTQELRGIF---EKSKKEYQLTKRR----------- 239
Query: 129 PPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKA 188
++ +DE Q L +E + N ++ + L SRC F +
Sbjct: 240 ---TVLFIDEIHRFNKVQQDLLLPHVENGDIILIGATTENPSFQLNNALISRCLIFVLEK 296
Query: 189 LDSSN---ALSRLQFIAN---------EESLKYEDGVLERILDISQGDLRKAITLLQ 233
L+ + LSR + N E LK +LE ++D+S GD R+A+ +L+
Sbjct: 297 LNVNELCIVLSRGIALLNKCRKQVWNIENPLKLSRSILEYVVDLSVGDTRRALNMLE 353
>CE20613 [L] KOG1968 Replication factor C subunit RFC1 (large subunit)
Length = 839
Score = 57.8 bits (138), Expect = 2e-08
Identities = 61/259 (23%), Positives = 104/259 (39%), Gaps = 47/259 (18%)
Query: 17 GKGQAKPWVEKYRPRKLDDVAAQDHAVTVLKRTLQTAN------------------LPHM 58
G A WV+KY+P+++ ++ Q+ + + + L+ P M
Sbjct: 273 GPPPALSWVDKYKPKRMGELVGQNGDKSPINKLLEWIKDWAKHNLGEGAKIKKPKPAPWM 332
Query: 59 -----------LFYGPPGTGKTSTILALTKELYGPHLSNSRVLELNASDERGISIVREKV 107
L G PG GKT+ ++L +++E+NASD R + K+
Sbjct: 333 SSQDGTSFKAALLSGSPGVGKTTCAYMACQQL------GLQLVEMNASDVRSKKHLEAKI 386
Query: 108 KNFARLTVSKPSESDLANYPCPP------YKIIILDEADSMTADAQSALRRTMETYSGVT 161
L+ S E C P + I+I+DE D M+ + A + +
Sbjct: 387 ---GELSGSHQIEQFFGAKKCAPQDNQKVHHILIMDEVDGMSGNEDRAGISELIQIIKES 443
Query: 162 RFCLICNYVTRI---IDPLASRCSKFRFKALDSSNALSRLQFIANEESLKYEDGVLERIL 218
+ +IC R I LA+ C RF SR+ I ++E +K L+ I+
Sbjct: 444 KIPIICICNDRQHPKIRTLANYCYDLRFPKPRVETIRSRMMTICSQEKMKIGKEELDEII 503
Query: 219 DISQGDLRKAITLLQSAAK 237
++S D+R+ I LQ +K
Sbjct: 504 ELSGHDVRQTIYNLQMRSK 522
>Hs22058826 [L] KOG0990 Replication factor C subunit RFC5
Length = 118
Score = 53.9 bits (128), Expect = 3e-07
Identities = 24/52 (46%), Positives = 35/52 (67%)
Query: 154 METYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDSSNALSRLQFIANEE 205
+E ++ TRFCLICNY+++II L SRC++FRF L + RL+ + EE
Sbjct: 15 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEE 66
>SPAC26H5.02c [L] KOG2028 ATPase related to the helicase subunit of the Holliday
junction resolvase
Length = 497
Score = 51.2 bits (121), Expect = 2e-06
Identities = 67/308 (21%), Positives = 118/308 (37%), Gaps = 54/308 (17%)
Query: 8 KKQKLNPSDGKGQAKPWVEKYRPRKLDDVAAQDHAV---TVLKRTLQTANLPHMLFYGPP 64
KK KL D +P E+ RP+ LD+ Q+ V +++ ++ M+ +G
Sbjct: 74 KKTKLTRRD----TRPLAERARPKSLDEYVGQEELVGERGIIRNLIEQDRCNSMILWGSA 129
Query: 65 GTGKT--STILALTKELYGPHLSNSRVLELNASDERGISI--VREKVKNFARLTVSKPSE 120
GTGKT + ++A+T + SR +E++A+ + E +N+ LT K
Sbjct: 130 GTGKTTLARLIAVT--------TKSRFIEISATSTTVADCRKIFEDSQNYLTLTGRK--- 178
Query: 121 SDLANYPCPPYKIIILDEADSMTADAQS----ALRRTMETYSGVTRFCLICNYVTRIIDP 176
II LDE Q + + + T G T N R+
Sbjct: 179 -----------TIIFLDEVHRFNRAQQDIFLPMVEKGLVTLIGATTE----NPSFRLNSA 223
Query: 177 LASRCSKFRFKALDSSNALSRLQFIANEESLK-------YEDGVLERILDISQGDLRKAI 229
L SRC F K L N L ES + E +++ I I+ GD R A+
Sbjct: 224 LISRCPVFVLKKLTRDNVKKILNHACLLESERLGSSMPNVETSIIDYISAITDGDARMAL 283
Query: 230 TLLQSA------AKIVLQNDDANTITLKHANELSGTIHEEILQDLINVIKGKDLNKIIDK 283
L+ + + L++ + + G +H + + ++G D++ +
Sbjct: 284 NALEMSIGMLRQGPLSLEDIKDKLVRSSALYDRVGDVHYDTISAFHKSVRGSDVDATLYY 343
Query: 284 VQEFVNQG 291
+ + G
Sbjct: 344 LGRMLESG 351
>SPBC902.02c [DL] KOG1969 DNA replication checkpoint protein CHL12/CTF18
Length = 960
Score = 50.1 bits (118), Expect = 5e-06
Identities = 55/235 (23%), Positives = 99/235 (41%), Gaps = 22/235 (9%)
Query: 58 MLFYGPPGTGKTSTILALTKELYGPHLSNSRVLELNASDERGISIVREKV----KNFARL 113
M+ G G GKT+ + H + +VLE+NASD+R V EKV N + L
Sbjct: 419 MMLTGLAGAGKTTLAHVIA------HQAGYKVLEINASDDRTAHTVHEKVSSAISNHSAL 472
Query: 114 TVSKPS-----ESDLANYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTR--FCLI 166
+ S+P+ E D + + +L+ + T +Q+ + + + + R C+
Sbjct: 473 S-SQPTCVIVDEIDGGDPAFVRALLSLLESDEKATEYSQAGNSKKKKKFKKLCRPIICIC 531
Query: 167 CNYVTRIIDPLASRCSKFRFKALDSSNALSRLQFIANEESLKYEDGVLERILDISQGDLR 226
+ T + PL F+ ++ + RL+ I E++ + L + DI D+R
Sbjct: 532 NDLYTPALRPLRPYAQIIYFRPPPQASLVGRLRTICRNENIAVDSRSLTLLTDIYNSDIR 591
Query: 227 KAITLLQSAAKIVLQNDDANTITLKHANELSGTIH-EEILQDLINVIKGKDLNKI 280
I LQ + L N ++ T+K S + ++Q L + K + I
Sbjct: 592 SCINSLQ---LLSLNNKRIDSETIKLLQPKSNSFSTSSLIQSLFLQLDNKQIRAI 643
>7296805 [L] KOG1968 Replication factor C subunit RFC1 (large subunit)
Length = 986
Score = 50.1 bits (118), Expect = 5e-06
Identities = 53/241 (21%), Positives = 90/241 (36%), Gaps = 48/241 (19%)
Query: 24 WVEKYRPRKLDDVAAQDHA---VTVLKRTLQTANLPH----------------------- 57
WV+K++P + ++ Q A VT L L + H
Sbjct: 423 WVDKHKPTSIKEIVGQAGAASNVTKLMNWLSKWYVNHDGNKKPQRPNPWAKNDDGSFYKA 482
Query: 58 MLFYGPPGTGKTSTILALTKELYGPHLSNSRVLELNASDERGISIVREKVKNFARLTVSK 117
L GPPG GKT+T + KEL +E NASD R +++++V
Sbjct: 483 ALLSGPPGIGKTTTATLVVKEL------GFDAVEFNASDTRSKRLLKDEVSTLL------ 530
Query: 118 PSESDLANY------PCPPYKIIILDEADSMTADAQSALRRTMETY---SGVTRFCLICN 168
S L+ Y ++I+DE D M + + + S + C+ +
Sbjct: 531 -SNKSLSGYFTGQGQAVSRKHVLIMDEVDGMAGNEDRGGMQELIALIKDSSIPIICMCND 589
Query: 169 YVTRIIDPLASRCSKFRFKALDSSNALSRLQFIANEESLKYEDGVLERILDISQGDLRKA 228
I L + C RF+ ++ I +E +K +E I+ + D+R++
Sbjct: 590 RNHPKIRSLVNYCYDLRFQRPRLEQIKGKIMSICFKEKVKISPAKVEEIIAATNNDIRQS 649
Query: 229 I 229
I
Sbjct: 650 I 650
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.132 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,223,777
Number of Sequences: 60738
Number of extensions: 812509
Number of successful extensions: 3446
Number of sequences better than 1.0e-05: 44
Number of HSP's better than 0.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 3337
Number of HSP's gapped (non-prelim): 50
length of query: 352
length of database: 30,389,216
effective HSP length: 107
effective length of query: 245
effective length of database: 23,890,250
effective search space: 5853111250
effective search space used: 5853111250
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)