ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII3605.1 suspect: Pn IG KOG1340 Carbohydrate transport and metabolism Prosaposin
r_klactII3605.1 suspect: Pn IG KOG1340 Lipid transport and metabolism Prosaposin
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII3605.1 1239400 1239564 55
(55 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
CE04112 [IG] KOG1340 Prosaposin 28 2.4
At5g49290 [R] KOG0619 FOG: Leucine rich repeat 27 4.0
Hs4504427 [CE] KOG2368 Hydroxymethylglutaryl-CoA lyase 27 5.3
At1g74180 [R] KOG0619 FOG: Leucine rich repeat 27 5.3
Hs14211903 [O] KOG1870 Ubiquitin C-terminal hydrolase 26 9.0
>CE04112 [IG] KOG1340 Prosaposin
Length = 402
Score = 28.1 bits (61), Expect = 2.4
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 7/41 (17%)
Query: 2 NKALNLFAKGALPEL-------FTKMSLNCSKEQLSTSTSK 35
+KA N+F +P+L FT+ L CS L ++TSK
Sbjct: 168 HKACNIFVSSVIPDLMTEMKDMFTEKELMCSNMGLCSATSK 208
>At5g49290 [R] KOG0619 FOG: Leucine rich repeat
Length = 888
Score = 27.3 bits (59), Expect = 4.0
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 13 LPELFTKMSLNCSKEQLSTSTSKCFSKLVDMDDLISSFHL 52
L +LF +LN S LS+ FSKL D++ L S+++
Sbjct: 719 LGDLFKLRALNLSHNFLSSHIPDSFSKLQDIESLDLSYNM 758
>Hs4504427 [CE] KOG2368 Hydroxymethylglutaryl-CoA lyase
Length = 325
Score = 26.9 bits (58), Expect = 5.3
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 11 GALPELFTKMSLNCSKEQ 28
GA ELFTK ++NCS E+
Sbjct: 128 GAASELFTKKNINCSIEE 145
>At1g74180 [R] KOG0619 FOG: Leucine rich repeat
Length = 951
Score = 26.9 bits (58), Expect = 5.3
Identities = 15/40 (37%), Positives = 24/40 (59%)
Query: 13 LPELFTKMSLNCSKEQLSTSTSKCFSKLVDMDDLISSFHL 52
L +L +LN S+ LS+S FSKL D++ L S+++
Sbjct: 778 LGDLSKLRALNLSRNLLSSSIPANFSKLKDIESLDLSYNM 817
>Hs14211903 [O] KOG1870 Ubiquitin C-terminal hydrolase
Length = 1274
Score = 26.2 bits (56), Expect = 9.0
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 13 LPELFTKMSLNCSKEQLSTSTSKCFSKLVDMDDLISSFHL 52
LP++ +K L+ SKE L S ++ ++ D +S H+
Sbjct: 1081 LPQIGSKNKLSSSKENLDASKENGAGQICELADALSRGHV 1120
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.317 0.129 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,841,498
Number of Sequences: 60738
Number of extensions: 69305
Number of successful extensions: 212
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 207
Number of HSP's gapped (non-prelim): 5
length of query: 55
length of database: 30,389,216
effective HSP length: 31
effective length of query: 24
effective length of database: 28,506,338
effective search space: 684152112
effective search space used: 684152112
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)