ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactII3647 good T KOG3329 Signal transduction mechanisms RAN guanine nucleotide release factor
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactII3647 1256190 1256780 197
(197 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YJR074w [T] KOG3329 RAN guanine nucleotide release factor 185 4e-47
At1g69680 [T] KOG3329 RAN guanine nucleotide release factor 70 1e-12
SPCC1840.01c [T] KOG3329 RAN guanine nucleotide release factor 68 7e-12
Hs7705529 [T] KOG3329 RAN guanine nucleotide release factor 58 1e-08
Hs11426755 [T] KOG3329 RAN guanine nucleotide release factor 56 3e-08
Hs7661826 [T] KOG3329 RAN guanine nucleotide release factor 50 3e-06
>YJR074w [T] KOG3329 RAN guanine nucleotide release factor
Length = 218
Score = 185 bits (469), Expect = 4e-47
Identities = 93/190 (48%), Positives = 134/190 (69%), Gaps = 8/190 (4%)
Query: 8 ELYGGAISTVIPKTFLDASMLRQVPDTQEVFVNSRRENEPSEDGLGFDESVIVDLMQRVE 67
ELYGGAI+TV+P F+DAS LR+VPDTQEV+VNSRR+ E EDGL +ES+IVDL++ V+
Sbjct: 37 ELYGGAITTVVPPGFIDASTLREVPDTQEVYVNSRRDEEEFEDGLATNESIIVDLLETVD 96
Query: 68 ENNDRKALDIHLAEISELNGSQKWTVIDHQEQTELKSQTCIVVETAYKWGKQSMKETVVM 127
+++ ++A H+ +++ELNG+ KW + + T +V+E A KWGK + +TVV+
Sbjct: 97 KSDLKEAWQFHVEDLTELNGTTKWEALQEDTVQQGTKFTGLVMEVANKWGKPDLAQTVVI 156
Query: 128 CVALLRLDQFDTDVIISVHVPISSEQELKAMEQAIAQNSPEKLPQRVHASYSLLRDMISS 187
VAL+RL QFDTDV+IS++VP++ E+ +Q S ++LP R HA Y LL++M+
Sbjct: 157 GVALIRLTQFDTDVVISINVPLTKEE--------ASQASNKELPARCHAVYQLLQEMVRK 208
Query: 188 FKVEDPSLFA 197
F V D SLFA
Sbjct: 209 FHVVDTSLFA 218
>At1g69680 [T] KOG3329 RAN guanine nucleotide release factor
Length = 186
Score = 70.5 bits (171), Expect = 1e-12
Identities = 60/196 (30%), Positives = 94/196 (47%), Gaps = 32/196 (16%)
Query: 9 LYGGAISTVIPKTFLDASMLRQVPDTQEVFVNSRRENEPSEDGLGFDESVIVDLMQRVEE 68
L+GGAISTV P+ F D S +RQVPD QEVFV+ R DES+I +L+ E
Sbjct: 11 LFGGAISTVFPQRFQDVSNIRQVPDHQEVFVDPSR-----------DESLIFELLDFKAE 59
Query: 69 NNDRKALDIHLAEISELNGSQKWTVIDHQEQTE---LKSQTCIVVETAYKWGKQSMKETV 125
D + L +++ ++ + +I+ E E L + V T ++ E V
Sbjct: 60 VGDIGSASWFLNDLASEQDAEGFQLIEQSEVIEAPGLSFRNISAVATT------AIGEMV 113
Query: 126 VMCVALLRLDQFDTDVIISVHVPI-----SSEQELKAMEQAIAQNSPEKLPQRVHASYSL 180
VA +RL DTDV+++ + PI S + A+ + K+P +
Sbjct: 114 Y--VANIRLKGVDTDVLVTAYEPILINPLSESADAVGSGLAVPASQSGKMPM-----CDI 166
Query: 181 LRDMISSFKVEDPSLF 196
++ +S+FKV D +LF
Sbjct: 167 IKQSLSTFKVNDWNLF 182
>SPCC1840.01c [T] KOG3329 RAN guanine nucleotide release factor
Length = 190
Score = 68.2 bits (165), Expect = 7e-12
Identities = 49/202 (24%), Positives = 94/202 (46%), Gaps = 26/202 (12%)
Query: 8 ELYGGAISTVIPKTFLDASMLRQVPDTQEVFVNSRRENEPSEDGLGFDESVIVDLMQRVE 67
+L+GGA+ P FLDAS+LRQ+PD QEVF+ +EN +VI++L++++E
Sbjct: 3 QLFGGALCADFPPKFLDASVLRQIPDNQEVFLQDSKEN----------LTVIIELLEKIE 52
Query: 68 ENNDRKALDIHLAEISELNGSQKWTV----------IDHQEQTELKSQTCIVVETAYKWG 117
+ D H I+ N + + + + + + + + G
Sbjct: 53 KPFDGSVAAYHFNSIAFDNDASQRVIWRDKSLGEDDFEGMRSEKASGSSVQGCQRVLEKG 112
Query: 118 KQSMKE--TVVMCVALLRLDQFDTDVIISVHVPISSEQELKAMEQAIAQNSPEKLPQRVH 175
K++ + V + V ++ L F TD++ISV+ P+ + + + +N P V
Sbjct: 113 KRNPESATNVAIFVNVITLIDFQTDIVISVNAPLPNTSSVPSS----VENIPPSDQSIVR 168
Query: 176 ASYSLLRDMISSFKVEDPSLFA 197
A+ ++ + S + D ++FA
Sbjct: 169 AALETIQRVTRSLVLVDKTVFA 190
>Hs7705529 [T] KOG3329 RAN guanine nucleotide release factor
Length = 185
Score = 57.8 bits (138), Expect = 1e-08
Identities = 51/197 (25%), Positives = 89/197 (44%), Gaps = 32/197 (16%)
Query: 9 LYGGAISTVIPKTFLDASMLRQVPDTQEVFVNSRRENEPSEDGLGFDESVIVDLMQRVEE 68
L+GGA S ++P +D S LR VPD QEVF + D+S+IV+L++
Sbjct: 9 LFGGAFSAILPMGAIDVSDLRPVPDNQEVFCHPVT-----------DQSLIVELLELQAH 57
Query: 69 NNDRKALDIHLAEISELNGSQKWTV-----IDHQEQTELKSQTCIVVETAYKWGK--QSM 121
A H ++ + G++ V + + E + Q V+ + K Q +
Sbjct: 58 VRGEAAARYHFEDVGGVQGARAVHVESVQPLSLENLPEGRCQEAWVLSGKQQIAKENQQV 117
Query: 122 KETVVMCVALLRLDQFDTDVIISVHVPISSEQELKAMEQAIAQNSPEKLPQRVHASYSL- 180
+ V + ALLRL Q+ TD++++ + P + + PE L A +SL
Sbjct: 118 AKDVTLHQALLRLPQYQTDLLLTFNQPPPDNR---------SSLGPENLSP---APWSLG 165
Query: 181 -LRDMISSFKVEDPSLF 196
+++S + DP++F
Sbjct: 166 DFEQLVTSLTLHDPNIF 182
>Hs11426755 [T] KOG3329 RAN guanine nucleotide release factor
Length = 186
Score = 56.2 bits (134), Expect = 3e-08
Identities = 53/198 (26%), Positives = 89/198 (44%), Gaps = 33/198 (16%)
Query: 9 LYGGAISTVIPKTFLDASMLRQVPDTQEVFVNSRRENEPSEDGLGFDESVIVDLMQRVEE 68
L+GGA S ++P +D S LR VPD QEVF + D+S+IV+L++
Sbjct: 9 LFGGAFSAILPMGAIDVSDLRPVPDNQEVFCHPVT-----------DQSLIVELLELQAH 57
Query: 69 NNDRKALDIHLAEISELNGSQKWTVIDHQ----EQTELKS--QTCIVVETAYKWGK--QS 120
A H ++ + G++ V Q E L+ Q V+ + K Q
Sbjct: 58 VRGEAAARYHFEDVGGVQGARAVHVESVQPLSLENLALRGRCQEAWVLSGKQQIAKENQQ 117
Query: 121 MKETVVMCVALLRLDQFDTDVIISVHVPISSEQELKAMEQAIAQNSPEKLPQRVHASYSL 180
+ + V + ALLRL Q+ TD++++ + P + + PE L A +SL
Sbjct: 118 VAKDVTLHQALLRLPQYQTDLLLTFNQPPPDNR---------SSLGPENLSP---APWSL 165
Query: 181 --LRDMISSFKVEDPSLF 196
+++S + DP++F
Sbjct: 166 GDFEQLVTSLTLHDPNIF 183
>Hs7661826 [T] KOG3329 RAN guanine nucleotide release factor
Length = 185
Score = 49.7 bits (117), Expect = 3e-06
Identities = 51/197 (25%), Positives = 90/197 (44%), Gaps = 32/197 (16%)
Query: 9 LYGGAISTVIPKTFLDASMLRQVPDTQEVFVNSRRENEPSEDGLGFDESVIVDLMQ-RVE 67
L+GGA S ++P +D S LR VPD QEVF + D+S+IV+L++ +
Sbjct: 9 LFGGAFSAILPMGAIDVSDLRPVPDNQEVFCHPVT-----------DQSLIVELLELQAH 57
Query: 68 ENNDR-KALDIHLAEISELNGSQKWTVIDHQE-QTELKS--QTCIVVETAYKWGK--QSM 121
+R + + + G W++ +T L+ Q V+ + K Q +
Sbjct: 58 VRGERLRGTTLRMLVACRGLGLSMWSLFSLSVWRTGLRGRCQEAWVLSGKQQIAKENQQV 117
Query: 122 KETVVMCVALLRLDQFDTDVIISVHVPISSEQELKAMEQAIAQNSPEKLPQRVHASYSL- 180
+ V + ALLRL Q+ TD++++ + P + + PE L A +SL
Sbjct: 118 AKDVTLHQALLRLPQYQTDLLLTFNQPPPDNR---------SSLGPENLSP---APWSLG 165
Query: 181 -LRDMISSFKVEDPSLF 196
+++S + DP++F
Sbjct: 166 DFEQLVTSLTLHDPNIF 182
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.316 0.130 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,408,935
Number of Sequences: 60738
Number of extensions: 449673
Number of successful extensions: 1295
Number of sequences better than 1.0e-05: 6
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1286
Number of HSP's gapped (non-prelim): 6
length of query: 197
length of database: 30,389,216
effective HSP length: 101
effective length of query: 96
effective length of database: 24,254,678
effective search space: 2328449088
effective search space used: 2328449088
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)