ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII0123 good JD KOG2874 Cell cycle control, cell division, chromosome partitioning rRNA processing protein
r_klactIII0123 good JD KOG2874 Translation, ribosomal structure and biogenesis rRNA processing protein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII0123 39576 38587 -330
(330 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YCL059c [JD] KOG2874 rRNA processing protein 511 e-145
SPBC25B2.05 [JD] KOG2874 rRNA processing protein 416 e-116
At5g08420 [JD] KOG2874 rRNA processing protein 362 e-100
7296147 [JD] KOG2874 rRNA processing protein 338 6e-93
Hs21359980 [JD] KOG2874 rRNA processing protein 338 8e-93
HsM20127513 [JD] KOG2874 rRNA processing protein 337 2e-92
CE07920 [JD] KOG2874 rRNA processing protein 300 2e-81
ECU04g0510 [JD] KOG2874 rRNA processing protein 214 1e-55
>YCL059c [JD] KOG2874 rRNA processing protein
Length = 316
Score = 511 bits (1315), Expect = e-145
Identities = 249/311 (80%), Positives = 275/311 (88%), Gaps = 2/311 (0%)
Query: 1 MVSTHNKDKPWDTDEVDKWNIEEFKPEDNKSGLPFAEESSFMTLFPKYREAYLKSVWKDV 60
MVSTHN+DKPWDTD++DKW IEEFK EDN SG PFAEESSFMTLFPKYRE+YLK++W DV
Sbjct: 1 MVSTHNRDKPWDTDDIDKWKIEEFKEEDNASGQPFAEESSFMTLFPKYRESYLKTIWNDV 60
Query: 61 TRSLDAHHIACELNLVEGSMTVKTTRKTYDPAVILKARDLIKLLARSVPFPQAVKILEDD 120
TR+LD H+IAC L+LVEGSMTVKTTRKTYDPA+ILKARDLIKLLARSVPFPQAVKIL+DD
Sbjct: 61 TRALDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQDD 120
Query: 121 VACDVIKIGNFVSNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSVMGPYKGL 180
+ACDVIKIGNFV+NKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVS MGP+KGL
Sbjct: 121 MACDVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGL 180
Query: 181 KEVRRVVEDCMKNVHPIYHIKELMIKRELAKKPELAEEDWSRFLPMFXXXXXXXX--XXX 238
KEVRRVVEDCMKN+HPIYHIKELMIKRELAK+PELA EDWSRFLPMF
Sbjct: 181 KEVRRVVEDCMKNIHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPKKI 240
Query: 239 XXXXXXXYTPFPPAQLPRKVDLEIESGEYFLSKREKEVKKLHERREQQAAKHAEKESERA 298
YTPFPPAQLPRKVDLEIESGEYFLSKREK++KKL+E++E+Q + E++ ERA
Sbjct: 241 RNVEKKVYTPFPPAQLPRKVDLEIESGEYFLSKREKQMKKLNEQKEKQMEREIERQEERA 300
Query: 299 KDFIAPKETDY 309
KDFIAP+E Y
Sbjct: 301 KDFIAPEEEAY 311
>SPBC25B2.05 [JD] KOG2874 rRNA processing protein
Length = 327
Score = 416 bits (1069), Expect = e-116
Identities = 208/303 (68%), Positives = 232/303 (75%), Gaps = 2/303 (0%)
Query: 5 HNKDKPWDTDEVDKWNIEEFKPEDNKSGLPFAEESSFMTLFPKYREAYLKSVWKDVTRSL 64
+ +DKPWDTD++D W IE F +D+K F EESSF TLFPKYRE YL+ VW VTR+L
Sbjct: 20 YRRDKPWDTDDIDHWKIEPFTKDDSKES--FLEESSFATLFPKYREKYLREVWPHVTRAL 77
Query: 65 DAHHIACELNLVEGSMTVKTTRKTYDPAVILKARDLIKLLARSVPFPQAVKILEDDVACD 124
D I C L+LVEGSMTVKTTRKT+DP IL ARDLIKLLARSVPFPQAVKI++D VACD
Sbjct: 78 DKFGITCVLDLVEGSMTVKTTRKTFDPYSILDARDLIKLLARSVPFPQAVKIMQDGVACD 137
Query: 125 VIKIGNFVSNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSVMGPYKGLKEVR 184
+IKIGN + NKERFVKRRQRL+G NG TLKALELLT+CYILVQG TV+VMG YKGLKEVR
Sbjct: 138 IIKIGNILRNKERFVKRRQRLIGTNGQTLKALELLTQCYILVQGTTVAVMGGYKGLKEVR 197
Query: 185 RVVEDCMKNVHPIYHIKELMIKRELAKKPELAEEDWSRFLPMFXXXXXXXXXXXXXXXXX 244
R+VEDCM N+HPIYHIKELMIKRELAK P LA E W RFLP F
Sbjct: 198 RIVEDCMHNIHPIYHIKELMIKRELAKDPTLANESWDRFLPQFKKRNVARRKPAKIRETK 257
Query: 245 XYTPFPPAQLPRKVDLEIESGEYFLSKREKEVKKLHERREQQAAKHAEKESERAKDFIAP 304
YTPFPPAQ P K+DLEIESGEYFL K EKE KK E++EQQ K EKE ER K FI P
Sbjct: 258 EYTPFPPAQPPSKLDLEIESGEYFLKKEEKERKKRAEKKEQQKEKKKEKEKERMKAFIPP 317
Query: 305 KET 307
+E+
Sbjct: 318 EES 320
>At5g08420 [JD] KOG2874 rRNA processing protein
Length = 391
Score = 362 bits (929), Expect = e-100
Identities = 178/304 (58%), Positives = 225/304 (73%), Gaps = 5/304 (1%)
Query: 5 HNKDKPWDTD-EVDKWNIEEFKPEDNKSGLPFAEESSFMTLFPKYREAYLKSVWKDVTRS 63
H K KPWD D +D+W IE+F P N +G+ E S+F TLFP+YRE YL+ W V +
Sbjct: 24 HEKPKPWDDDPNIDRWTIEKFDPAWNPTGM--TETSTFSTLFPQYREKYLQECWPRVESA 81
Query: 64 LDAHHIACELNLVEGSMTVKTTRKTYDPAVILKARDLIKLLARSVPFPQAVKILEDDVAC 123
L + +AC+LNLVEGSMTV TTRKT DP +I+KARDLIKLL+RSVP PQA+KILED+V C
Sbjct: 82 LKEYGVACKLNLVEGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAPQAIKILEDEVQC 141
Query: 124 DVIKIGNFVSNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSVMGPYKGLKEV 183
D+IKIGN V NKERFVKRRQRLVGPN +TLKALE+LT CYILVQG+TV+ MGP+KGLK++
Sbjct: 142 DIIKIGNLVRNKERFVKRRQRLVGPNSSTLKALEILTNCYILVQGSTVAAMGPFKGLKQL 201
Query: 184 RRVVEDCMKNV-HPIYHIKELMIKRELAKKPELAEEDWSRFLPMFXXXXXXXXXXXXXXX 242
RR+VEDC++N+ HP+YHIK LM+K+EL K P LA E W RFLP F
Sbjct: 202 RRIVEDCVQNIMHPVYHIKTLMMKKELEKDPALANESWDRFLPTF-RKKNVKQKKPKSKE 260
Query: 243 XXXYTPFPPAQLPRKVDLEIESGEYFLSKREKEVKKLHERREQQAAKHAEKESERAKDFI 302
YTPFPP Q P K+D+++ESGEYF+S ++K KK E++E+Q+ K E + +R F+
Sbjct: 261 KKPYTPFPPPQPPSKIDMQLESGEYFMSDKKKSEKKWQEKQEKQSEKSTENKRKRDASFL 320
Query: 303 APKE 306
P+E
Sbjct: 321 PPEE 324
>7296147 [JD] KOG2874 rRNA processing protein
Length = 345
Score = 338 bits (867), Expect = 6e-93
Identities = 171/306 (55%), Positives = 212/306 (68%), Gaps = 9/306 (2%)
Query: 2 VSTHNKDKPWDTDEVDKWNIEEFKPEDNKSGLPFAEESSFMTLFPKYREAYLKSVWKDVT 61
+ST D W I F+ EDN G+ EESSF TLFPKYRE YLK VW V
Sbjct: 11 ISTEPVDNAWSM------KIPAFRQEDNPHGM--VEESSFATLFPKYRERYLKEVWPLVE 62
Query: 62 RSLDAHHIACELNLVEGSMTVKTTRKTYDPAVILKARDLIKLLARSVPFPQAVKILEDDV 121
+ L HH+ EL+L+EGSM VKT+RKT+DP +I+KARD+IKL+ARSVPF QA ++L+DD+
Sbjct: 63 QCLAEHHLKAELDLMEGSMVVKTSRKTWDPYIIIKARDMIKLMARSVPFEQAKRVLQDDI 122
Query: 122 ACDVIKIGNFVSNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSVMGPYKGLK 181
CD+IKIGN V KE+FVKRRQRL+GPNG TLK++ELLT CY+LVQGNTVS +GPYKGL+
Sbjct: 123 GCDIIKIGNLVHKKEKFVKRRQRLIGPNGATLKSIELLTDCYVLVQGNTVSALGPYKGLQ 182
Query: 182 EVRRVVEDCMKNVHPIYHIKELMIKRELAKKPELAEEDWSRFLPMFXXXXXXXXXX-XXX 240
+VR +V + M NVHPIY+IK LMIKREL K P LA EDWSRFLP F
Sbjct: 183 QVRDIVLETMNNVHPIYNIKALMIKRELMKDPRLANEDWSRFLPKFKNKNISKRKQPKVK 242
Query: 241 XXXXXYTPFPPAQLPRKVDLEIESGEYFLSKREKEVKKLHERREQQAAKHAEKESERAKD 300
YTPFPP+Q KVD ++ SGEYFL++ +K+ K+ ER E+Q ++ R KD
Sbjct: 243 KQKKEYTPFPPSQPESKVDKQLASGEYFLNQEQKQAKRNQERTEKQKEAAKRQDERRNKD 302
Query: 301 FIAPKE 306
F+ P E
Sbjct: 303 FVPPTE 308
>Hs21359980 [JD] KOG2874 rRNA processing protein
Length = 381
Score = 338 bits (866), Expect = 8e-93
Identities = 176/309 (56%), Positives = 215/309 (68%), Gaps = 9/309 (2%)
Query: 5 HNKDKPWDTDEV------DKWNIEEFKPEDNKSGLPFAEESSFMTLFPKYREAYLKSVWK 58
+ K KP + DE D W F EDN GL EESSF TLFPKYREAYLK W
Sbjct: 20 NQKPKPENQDESELLTVPDGWKEPAFSKEDNPRGL--LEESSFATLFPKYREAYLKECWP 77
Query: 59 DVTRSLDAHHIACELNLVEGSMTVKTTRKTYDPAVILKARDLIKLLARSVPFPQAVKILE 118
V ++L+ HH+ L+L+EGSMTV TT+KT+DP +I++ARDLIKLLARSV F QAV+IL+
Sbjct: 78 LVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQ 137
Query: 119 DDVACDVIKIGNFVSNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSVMGPYK 178
DDVACD+IKIG+ V NKERFVKRRQRL+GP G+TLKALELLT CYI+VQGNTVS +GP+
Sbjct: 138 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFS 197
Query: 179 GLKEVRRVVEDCMKNVHPIYHIKELMIKRELAKKPELAEEDWSRFLPMFXXXXXXXXXX- 237
GLKEVR+V D MKN+HPIY+IK LMIKRELAK EL + W RFLP F
Sbjct: 198 GLKEVRKVALDTMKNIHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEP 257
Query: 238 XXXXXXXXYTPFPPAQLPRKVDLEIESGEYFLSKREKEVKKLHERREQQAAKHAEKESER 297
YTPFPP Q ++D E+ SGEYFL +K+ +K+ + +QA ++++ ER
Sbjct: 258 KKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKRQEER 317
Query: 298 AKDFIAPKE 306
K FI PKE
Sbjct: 318 NKAFIPPKE 326
>HsM20127513 [JD] KOG2874 rRNA processing protein
Length = 381
Score = 337 bits (863), Expect = 2e-92
Identities = 176/309 (56%), Positives = 215/309 (68%), Gaps = 9/309 (2%)
Query: 5 HNKDKPWDTDEV------DKWNIEEFKPEDNKSGLPFAEESSFMTLFPKYREAYLKSVWK 58
+ K KP + DE D W F EDN GL EESSF TLFPKYR AYLK W
Sbjct: 20 NQKPKPENQDESELLTVPDGWKEPAFSKEDNPRGL--LEESSFATLFPKYRGAYLKECWP 77
Query: 59 DVTRSLDAHHIACELNLVEGSMTVKTTRKTYDPAVILKARDLIKLLARSVPFPQAVKILE 118
V ++L+ HH+ L+L+EGSMTV TT+KT+DP +I++ARDLIKLLARSV F QAV+IL+
Sbjct: 78 LVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQ 137
Query: 119 DDVACDVIKIGNFVSNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSVMGPYK 178
DDVACD+IKIG+ V NKERFVKRRQRL+GP G+TLKALELLT CYI+VQGNTVS +GP+
Sbjct: 138 DDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFS 197
Query: 179 GLKEVRRVVEDCMKNVHPIYHIKELMIKRELAKKPELAEEDWSRFLPMFXXXXXXXXXX- 237
GLKEVR+VV D MKN+HPIY+IK LMIKRELAK EL + W RFLP F
Sbjct: 198 GLKEVRKVVLDTMKNIHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEP 257
Query: 238 XXXXXXXXYTPFPPAQLPRKVDLEIESGEYFLSKREKEVKKLHERREQQAAKHAEKESER 297
YTPFPP Q ++D E+ SGEYFL +K+ +K+ + +QA ++++ ER
Sbjct: 258 KKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKRQEER 317
Query: 298 AKDFIAPKE 306
K FI PKE
Sbjct: 318 NKAFIPPKE 326
>CE07920 [JD] KOG2874 rRNA processing protein
Length = 370
Score = 300 bits (768), Expect = 2e-81
Identities = 146/308 (47%), Positives = 206/308 (66%), Gaps = 17/308 (5%)
Query: 7 KDKPWDTDEVDKWNIEEFKPEDNKSGLPFAEESSFMTLFPKYREAYLKSVWKDVTRSLDA 66
KD W W+I F EDN +GL +ESSF +LFPKYRE Y+K W + ++L
Sbjct: 40 KDAEW-------WDINTFSKEDNPNGL--LQESSFSSLFPKYREKYIKESWPLIEKALGE 90
Query: 67 HHIACELNLVEGSMTVKTTRKTYDPAVILKARDLIKLLARSVPFPQAVKILEDDVACDVI 126
H + +L+L+EG+M V+TTRKT+DP +I+KAR++IKLL+RSVP+ QA+++LED++ C++I
Sbjct: 91 HFLKADLDLLEGTMCVRTTRKTWDPYIIMKAREVIKLLSRSVPYEQAIRVLEDEIYCEII 150
Query: 127 KIGNFVSNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSVMGPYKGLKEVRRV 186
KI + V NKERFVKRR RL+G +G TLKALELLT+CY+ VQG TV +GP GLK++ ++
Sbjct: 151 KISSMVRNKERFVKRRARLIGNDGATLKALELLTQCYVCVQGGTVCAVGPLAGLKQINQI 210
Query: 187 VEDCMKNVHPIYHIKELMIKRELAKKPELAEEDWSRFLPMFXXXXXXXXXXXXXXXXXXY 246
V DCMKN+HPIY+IK +MIKREL+K EL + +W +LP + Y
Sbjct: 211 VTDCMKNIHPIYNIKTMMIKRELSKNDELKDANWDAYLPNYRKKVQSATTTKEAKKKKAY 270
Query: 247 --------TPFPPAQLPRKVDLEIESGEYFLSKREKEVKKLHERREQQAAKHAEKESERA 298
TPFPPA + K+D +IESGEYF+ + E+++ K + E A K EK+ ++
Sbjct: 271 KMKPKKEFTPFPPAPVMSKIDKQIESGEYFIRENERKMNKKRAKLEASAVKTVEKQKQKL 330
Query: 299 KDFIAPKE 306
K + A +E
Sbjct: 331 KVYQAKEE 338
>ECU04g0510 [JD] KOG2874 rRNA processing protein
Length = 283
Score = 214 bits (545), Expect = 1e-55
Identities = 111/285 (38%), Positives = 170/285 (58%), Gaps = 4/285 (1%)
Query: 22 EEFKPEDNKSGLPFAEESSFMTLFPKYREAYLKSVWKDVTRSLDAHHIACELNLVEGSMT 81
+E K D FAE SS +FPKYRE Y++ K + R+L+A I+C ++L + +
Sbjct: 3 QEVKFSDGDFKHEFAEMSSEAVMFPKYREKYIEQTQKYIVRALEAKKISCRIDLEKRVID 62
Query: 82 VKTTRKTYDPAVILKARDLIKLLARSVPFPQAVKILEDDVACDVIKIGNFVSNKERFVKR 141
V T R T DP + +KA + +KL+ R V +A+K+LED+ C+VI I VS+ + F KR
Sbjct: 63 VMTNRSTRDPFIFIKAVNFVKLVGRGVGIEEAMKVLEDEYFCEVIDIKKMVSSDKVFEKR 122
Query: 142 RQRLVGPNGNTLKALELLTKCYILVQGNTVSVMGPYKGLKEVRRVVEDCMKNVHPIYHIK 201
R RLVGP TLKA+++LT+CY+LV G TVS++G ++G++E +++V DCM N+HP+Y IK
Sbjct: 123 RDRLVGPKEMTLKAIQILTRCYVLVHGKTVSIIGGFRGVEEAKKIVVDCMNNIHPMYQIK 182
Query: 202 ELMIKRELAKKPELAEEDWSRFLPMFXXXXXXXXXXXXXXXXXXYTPFPPAQLPRKVDLE 261
L+ KR++ EDWSRFLP P A+ RK D+E
Sbjct: 183 RLVEKRKMESDETKENEDWSRFLPQVKKSSKKSKKKKVVGRPTGNMPEDAAK--RKEDIE 240
Query: 262 IESGEYFLSKREKEVKKLHERREQQAAKHAEKESERAKDFIAPKE 306
+E+GEYF+ R++ K E E++ + E++ + + ++AP E
Sbjct: 241 METGEYFV--RDESSSKEKEEAEERRIRRKERKMKDMEKYLAPDE 283
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.317 0.135 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,871,652
Number of Sequences: 60738
Number of extensions: 768043
Number of successful extensions: 3512
Number of sequences better than 1.0e-05: 8
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3490
Number of HSP's gapped (non-prelim): 9
length of query: 330
length of database: 30,389,216
effective HSP length: 107
effective length of query: 223
effective length of database: 23,890,250
effective search space: 5327525750
effective search space used: 5327525750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)