ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactIII0203  suspect: LH   Z     KOG0516  Cytoskeleton                                                   Dystonin, GAS (Growth-arrest-specific protein), and related proteins

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIII0203  66498 65446 -351 
         (351 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Hs21553341 [Z] KOG0516 Dystonin GAS (Growth-arrest-specific prot...    50   4e-06

>Hs21553341 [Z] KOG0516 Dystonin GAS (Growth-arrest-specific protein) and related
            proteins
          Length = 6885

 Score = 50.4 bits (119), Expect = 4e-06
 Identities = 59/298 (19%), Positives = 119/298 (39%), Gaps = 41/298 (13%)

Query: 8    YYSEVEKFEYQVTHVTEQILQEQDRLRGSTLHEYNQTILQLVSDYEMFNSNGQCDPSEIN 67
            ++S++ + + +V  + EQ              E+   ++     Y+  +   +C  S++N
Sbjct: 3730 WHSKLNELDSEVQDIVEQ--------DPGQAQEWMDNLMIPFQQYQQVSQRAECRTSQLN 3781

Query: 68   LPLEKLESWTNSLKQIHLELESIDNFLRYAIPSD-----------QTILNLSKFNESKYE 116
                K+E +++ LK     +E+  + L  A P+D            T+    + +E K+ 
Sbjct: 3782 KATVKMEEYSDLLKSTEAWIENTSHLL--ANPADYDSLRTLSHHASTVQMALEDSEQKHN 3839

Query: 117  TLQAEVSELRDINVVQLQKEIESLQQQITTKSDENLLISEKIKESCLEASQDIDQCWKLL 176
             L +   +L D++++    E + L Q I   S++   + +KI ES  +  +  D    + 
Sbjct: 3840 LLHSIFMDLEDLSII---FETDELTQSIQELSNQVTALQQKIMESLPQIQRMADDVVAIE 3896

Query: 177  EQLEAYENANPSTEVITTTDPAFSTYNQWKWNQLAESELKHINQQLITLRATKEKLDKVF 236
             ++++ E      + I  +   F        +   E  LKH    L  +R  K+ + ++ 
Sbjct: 3897 SEVKSMEKRVSKIKTILLSKEIF--------DFSPEEHLKHGEVILENIRPMKKTIAEIV 3948

Query: 237  SKRSELETSPKSIETFTSYQLLSQLWRSKFIRQLLPDIANLEVYPQSGKLKFEVGIMQ 294
            S + EL      ++    +Q  +         QLL DI  LE   Q      +V I Q
Sbjct: 3949 SYQVELRLPQTGMKPLPVFQRTN---------QLLQDIKLLENVTQEQNELLKVVIKQ 3997


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.313    0.130    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,604,684
Number of Sequences: 60738
Number of extensions: 794105
Number of successful extensions: 2909
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2906
Number of HSP's gapped (non-prelim): 4
length of query: 351
length of database: 30,389,216
effective HSP length: 107
effective length of query: 244
effective length of database: 23,890,250
effective search space: 5829221000
effective search space used: 5829221000
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)