ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII0324 good A KOG4008 RNA processing and modification rRNA processing protein RRP7
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIII0324  107885 106908 -326 
         (326 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YCL031c [A] KOG4008 rRNA processing protein RRP7                      360   2e-99
SPBC776.17 [A] KOG4008 rRNA processing protein RRP7                    61   2e-09
CE18436 [A] KOG4008 rRNA processing protein RRP7                       50   3e-06

>YCL031c [A] KOG4008 rRNA processing protein RRP7
          Length = 297

 Score =  360 bits (923), Expect = 2e-99
 Identities = 176/292 (60%), Positives = 222/292 (75%), Gaps = 3/292 (1%)

Query: 38  LEQMQNGFLIVPFLLPQVKSLNQKPTKVYHYMFVRKHQSKLENEQHCLFLVNLPLLTQLE 97
           +  M+NGF++VPF LP  K+L +      H+MF ++HQS   NE  CLFLVNLPLL+ +E
Sbjct: 6   ISAMKNGFIVVPFKLPDHKALPKSQEASLHFMFAKRHQSSNSNESDCLFLVNLPLLSNIE 65

Query: 98  NLKKNFQEICHQNETVSHVQDLLYHDEFGLHDVDLSSLTSHLMSVDEPSEKRFTPRNTAL 157
           ++KK   ++C + +TVSHV++LLY+DEFGLH+VDLS+LTS LMS  + +EKR+TPRNTAL
Sbjct: 66  HMKKFVGQLCGKYDTVSHVEELLYNDEFGLHEVDLSALTSDLMSSTDVNEKRYTPRNTAL 125

Query: 158 LQFVDKQSVENCWEALRKYSS--SKKQQQIL-WEFQSPSIETFTAFYRPLPLKYLKTDIH 214
           L+FVD  S+ NCW AL+KYS+  +K   ++  W + +PS  TF  FY+PL + YLK DIH
Sbjct: 126 LKFVDAASINNCWNALKKYSNLHAKHPNELFEWTYTTPSFTTFVNFYKPLDIDYLKEDIH 185

Query: 215 EHMALFXXXXXXXXXXXXSSIVDEDGFTLVVGKNTKSLNSIRKKIFNRNPLLKHEKPKKM 274
            HMA+F            SSIVDEDGFTLVVGKNTKSLNSIRKKI N+NPL KHE   K 
Sbjct: 186 THMAIFEQREAQAQEDVQSSIVDEDGFTLVVGKNTKSLNSIRKKILNKNPLSKHENKAKP 245

Query: 275 PNMVDKKAKKDFYRFQVRERKKQEINELLAKFKQDQEKIKEMKSKRRFNPYT 326
            + +DKKAKKDFYRFQVRERKKQEIN+LL+KFK+DQE+IK MK+KR+FNPYT
Sbjct: 246 ISNIDKKAKKDFYRFQVRERKKQEINQLLSKFKEDQERIKVMKAKRKFNPYT 297


>SPBC776.17 [A] KOG4008 rRNA processing protein RRP7
          Length = 254

 Score = 61.2 bits (147), Expect = 2e-09
 Identities = 62/280 (22%), Positives = 121/280 (43%), Gaps = 63/280 (22%)

Query: 64  KVYHYMFVRKHQSKLENEQHCLFLVNLPLLTQLENLKKNFQEICHQNETVSHVQDLLYHD 123
           K  H +F+++    +E +   L+L+N+P+ T  + LK+   ++  +   +       Y +
Sbjct: 20  KRLHSIFLKEDTEDVEKKS--LYLINVPITTTEKILKRAISQLGGRIVNI-------YPN 70

Query: 124 EFGLHDVDLSSLTSHLMSVDEPSEKRFTPRNTALLQFVDKQSVENCWEALRKYSSSKKQQ 183
             GL    L S T   + + EP+E +       +++   K++    W+  +     +K  
Sbjct: 71  ISGL----LKSGTHLRVKLVEPAEVK------QVIKAASKKTTSLPWKFTQHTGLKRKNM 120

Query: 184 QILW----------------EFQSPSI--ETFTAFYRPLPLKYLKTDIHEHMALFXXXXX 225
            I++                +F +P +  E+  ++ +    +  K +I E   LF     
Sbjct: 121 VIIFLEILMCLIGYVESYDRQFVNPRVLAESVDSYMK----RVTKKEIAEKRRLFAM--- 173

Query: 226 XXXXXXXSSIVDEDGFTLVVGKNTKSLNSIRKKIFNRNPLLKHEKPKKMPNMVDKKAKKD 285
                   +  DEDGF  VV      +                +  +++    D    KD
Sbjct: 174 -------KNQPDEDGFVTVVRSGRAPVGR------------PQDAERQLEKKKDTGIHKD 214

Query: 286 FYRFQVRERKKQEINELLAKFKQDQEKIKEMKSKRRFNPY 325
           FYRFQ+RE+KK+ + +L  KF+ D+++I+++K KR+F PY
Sbjct: 215 FYRFQLREKKKKALLDLAHKFEFDKQRIQQLKEKRQFKPY 254


>CE18436 [A] KOG4008 rRNA processing protein RRP7
          Length = 261

 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 12/90 (13%)

Query: 237 DEDGFTLVVGKNTKSLNSIRKKIFNRNPLLKHEKPKKMPNMVDKKAKKD--FYRFQVRER 294
           DEDG+ + V K  K+  S++         LK E    +  + +KK K D  +Y FQ+++ 
Sbjct: 181 DEDGW-ITVTKAKKAAKSVK---------LKKEDVPLIGGLNNKKKKVDLAYYTFQIKKN 230

Query: 295 KKQEINELLAKFKQDQEKIKEMKSKRRFNP 324
           ++++  ELL KF++D+++I ++K  R F P
Sbjct: 231 RQEKAQELLKKFEEDRKRITQLKQARNFKP 260


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.320    0.134    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,279,739
Number of Sequences: 60738
Number of extensions: 813807
Number of successful extensions: 3402
Number of sequences better than 1.0e-05: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3397
Number of HSP's gapped (non-prelim): 5
length of query: 326
length of database: 30,389,216
effective HSP length: 107
effective length of query: 219
effective length of database: 23,890,250
effective search space: 5231964750
effective search space used: 5231964750
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)