ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactIII0454  suspect: LH   J     KOG3475  Translation, ribosomal structure and biogenesis                60S ribosomal protein L37

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIII0454  149571  149705 45   
         (45 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YDR500c [J] KOG3475 60S ribosomal protein L37                          58   2e-09
YLR185w [J] KOG3475 60S ribosomal protein L37                          52   2e-07

>YDR500c [J] KOG3475 60S ribosomal protein L37
          Length = 88

 Score = 58.2 bits (139), Expect = 2e-09
 Identities = 27/44 (61%), Positives = 28/44 (63%)

Query: 2  RSHNWXXXXXXXXXXXXXXMRYLKHVSRRFKNGFQSGEAKAQSA 45
          RSHNW              MRYLKHVSRRFKNGFQ+G AKA SA
Sbjct: 45 RSHNWAAKAKRRHTTGTGRMRYLKHVSRRFKNGFQTGSAKATSA 88


>YLR185w [J] KOG3475 60S ribosomal protein L37
          Length = 88

 Score = 51.6 bits (122), Expect = 2e-07
 Identities = 24/44 (54%), Positives = 26/44 (58%)

Query: 2  RSHNWXXXXXXXXXXXXXXMRYLKHVSRRFKNGFQSGEAKAQSA 45
          RS+NW              MRYLKHVSRRFKNGFQ+G A   SA
Sbjct: 45 RSYNWGAKAKRRHTTGTGRMRYLKHVSRRFKNGFQTGSASKASA 88


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.321    0.126    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,683,598
Number of Sequences: 60738
Number of extensions: 23753
Number of successful extensions: 54
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52
Number of HSP's gapped (non-prelim): 2
length of query: 45
length of database: 30,389,216
effective HSP length: 21
effective length of query: 24
effective length of database: 29,113,718
effective search space: 698729232
effective search space used: 698729232
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)