ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII0672 suspect: LH R KOG4711 General function prediction only Predicted membrane protein
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII0672 225054 221473 -1194
(1194 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YGL140c [R] KOG4711 Predicted membrane protein 1160 0.0
>YGL140c [R] KOG4711 Predicted membrane protein
Length = 1219
Score = 1160 bits (3001), Expect = 0.0
Identities = 621/1235 (50%), Positives = 816/1235 (65%), Gaps = 67/1235 (5%)
Query: 6 SLKNGYAKFQR----YFPCDKVLAKRIFKSTVHSTVALIFCLIPKVRERLGNEPAMLPLI 61
SLK+ K Q+ YFPCD++LAKRI KSTV++TVA IFCLIPK+ LG PAMLP+I
Sbjct: 2 SLKSKLTKIQKLWLYYFPCDRILAKRICKSTVNTTVAFIFCLIPKITAHLGAAPAMLPMI 61
Query: 62 SVMVHPGRRVGGTIQGAIYCITGLIFGLAFSLLGRFLAQRCLGSTWNILDEKEQLVSNYN 121
SV+VHPGRRVGGTI GAIYCITGLIFGLA+++ GRFLAQRCLGS+W+ L E +Q V +Y
Sbjct: 62 SVIVHPGRRVGGTIHGAIYCITGLIFGLAYAIFGRFLAQRCLGSSWHELTEAQQHVLHYK 121
Query: 122 SYRSGLAILSVFEVIMLFVHGWMRSVSHHYFGIVFPLFLVVHFAFLAPLXXXXXXXXXXX 181
Y +GLAIL+VFEVIMLF HGWMRSVSH+YFGIVFPLF+VVHFAF+ PL
Sbjct: 122 RYEAGLAILAVFEVIMLFFHGWMRSVSHYYFGIVFPLFVVVHFAFMDPLNETAGTIAKAY 181
Query: 182 XTPFYLGIAMSLFWNLTLFPEFGSTYLGNTTVYTLNEIHHSLNNAINFFLSID-EESKKL 240
TPFYLGIAMS+FWNL LFPE+G+TYLGNTT+ +NE+H S++ +INFF+++D S +L
Sbjct: 182 STPFYLGIAMSIFWNLVLFPEWGTTYLGNTTIDAMNELHKSIDYSINFFIAVDPHNSSQL 241
Query: 241 YAADTVSSAKLLKMKDNVAKKVSACSAVTEECIYEISYSYMSPTELKPVTSRFKDLAIYV 300
Y+ D VS KLLKMK ++ KV+ C V ECIYE +Y+Y+SPT+LKP+ S ++L +++
Sbjct: 242 YSRDPVSLGKLLKMKSLISSKVNNCRVVLHECIYEFTYAYVSPTKLKPIISTLENLTVFI 301
Query: 301 NAIINACQLEFMLLGHTHN-----EHDLLNIDTEKEIRHADAAKLTKVLLKVRIHIFRLH 355
N ++N CQLEF+LL N + L + KEI A+A KL KV+ K+ I+ LH
Sbjct: 302 NGLVNTCQLEFILLARHDNKLRPDDVAALTLPKNKEISFANAEKLLKVIDKLHPVIYSLH 361
Query: 356 KTLSDCFYLVKVILARDFDVQLDKVRIPKAFEMDDFPQFKNR-DDLPMHIDTEMYINKLV 414
+T+S+C Y+ K++LA FDV++ +V F+ +FP F N ++LP +D + IN L
Sbjct: 362 RTMSECMYIAKLVLAHAFDVKVSRVHSCSMFKDGNFPTFSNNANNLPNDVDIQNKINDLK 421
Query: 415 KALVQFDLSFREELSNIDADLLEPNDEMFLLASFLMNFKEITNTIISIMKSVKEMHIKRM 474
+AL + F+ E+ + D D++ P+DEMFLL+SFL+NF++ ++ + IM+SVK++ +KR
Sbjct: 422 QALEECKAKFKSEMLSFDIDIMSPSDEMFLLSSFLLNFRQTADSTLVIMESVKDILVKRQ 481
Query: 475 EREEKGWFRGKSIWFVALHNRASFIDWFYGSQRRAQRGTENDSLGG---GHSIHFNPETV 531
+E+KGW RGK +WF+ L N +F W G + TEND+L G G++ F +TV
Sbjct: 482 IQEKKGWLRGKRLWFLVLTNYETFSIWLKGDRNSV---TENDTLKGTFNGNTNGFAHDTV 538
Query: 532 PLRPDYEEDELLSQQASSHVNLNESESSGPV----LPKNNTDNSTEDITSP--------- 578
RPDYEE+ELLSQ+ SS+ N+ + ++S + PK N+ ++++ +SP
Sbjct: 539 IRRPDYEENELLSQKVSSNKNIVKDDASLDLPMTSEPKGNSSSTSDTSSSPLTLTKTTTF 598
Query: 579 -------SQGFISVCNRWFKKLLLSINRFYKSSRNHFRFGLQVTVALMLASFPMFVPESR 631
QG S F +L+SI++F + S HFRFG QV +ALMLASFPMF+P++R
Sbjct: 599 GTNRTSRRQGRFS-----FMSMLISIDKFCEVSHPHFRFGFQVAIALMLASFPMFIPKTR 653
Query: 632 NWYVNIHGAWIGFVCILCLEPSVGGTFWVFFLRGVGVIAGAAWGYLSYVAGINQTNPYLE 691
WY++ G WIGFVCILCLEPSVGGTFWVFFLR VGVI GAAWGYLSYVA +NQTNPYLE
Sbjct: 654 QWYIDYRGTWIGFVCILCLEPSVGGTFWVFFLRAVGVIFGAAWGYLSYVAAVNQTNPYLE 713
Query: 692 VIITIFGAVPGFYFLLGSPXXXXXXXXXXXXXXVMLAAILPGSIKGSILQNFAKRCXXXX 751
+IT+FGA+PGFY+LLG+P VMLAAILP + IL +FAKRC
Sbjct: 714 TVITVFGAIPGFYYLLGTPYVKAAIIEIISIYIVMLAAILPS--QDDILTSFAKRCLAVG 771
Query: 752 XXXXXXXXXQVTLFPITARDQLNAEIAFSVGCLAEMETLYAAGIEGEALKLSLSDEKYER 811
QV FP+ AR+QLN EI+F GC++EME LYA G+EGE + S+S+EKY++
Sbjct: 772 YGGGVALIVQVFFFPLKAREQLNEEISFVCGCISEMELLYATGLEGEQVASSMSEEKYKK 831
Query: 812 FRKLSEATKSALSRATSYKGLTRQEPRLKGEYTELENVFTQIIFILKQVVERLDNSVLLR 871
K+S++ K AL+RAT+YKGLTRQEPRLKGEYTELENVFTQ+IFI KQ++ER+D LLR
Sbjct: 832 IEKISKSAKEALARATAYKGLTRQEPRLKGEYTELENVFTQVIFIQKQIIERIDTISLLR 891
Query: 872 RQYGSAIAEELNSIVYPYRRQFVASIVNILRAVQEAIINKTPMPQYLPSSRIAHRRLINK 931
+Q GSA+ EE NS+VYPYRRQ V SI ++RA+QEA INKTP+PQ+LPS+RIAHRRLINK
Sbjct: 892 KQNGSAVIEEFNSVVYPYRRQMVGSISCLMRALQEAFINKTPLPQFLPSARIAHRRLINK 951
Query: 932 VRETLKIRYGTQLHKPNTSENSGESYLRKNGNIYNLXXXXXXXXXLGLIMKPKR--NINV 989
VR+TL+IRY P N + + N Y GL+MK R N
Sbjct: 952 VRQTLRIRY------PGQISNLSDKARKPNEGDYADGKDEDDDDNEGLVMKMNRRGQANT 1005
Query: 990 NMKERQFILKEKFLSWXXXXXXXXXXXXXXXXLVELTKILVGVNEFKYGFLSRPLYEDWA 1049
+++LKEKFLSW L+ LTKILVGVNEFKYGFLSRPLYEDWA
Sbjct: 1006 TANPHEYVLKEKFLSWNASSAASEEIIEYIEELLNLTKILVGVNEFKYGFLSRPLYEDWA 1065
Query: 1050 AEAVVGFADFVNHTQAP-----RKPPTRGREL----DEDVPSENEMQSLDEDAVESNSDV 1100
AEAV GF +F+N P + P G + +E + S N +S + + +S
Sbjct: 1066 AEAVTGFDNFINGKSNPMNTRRNRTPFDGTSIISEGNESLQSTNSNES--QISPDSTRSY 1123
Query: 1101 EAIQPVAL-PTDEHVSRTLARMATNTTQHSHGESSSKWRRRAYSIGSGMGTDDLNSLTKV 1159
E PVA D + L R+A++ + +R RA+SI S G L+SL++
Sbjct: 1124 EPECPVAYEKNDNPAALNLLRIASHKAGQNADGLPKTFRNRAFSITSTSG--QLSSLSRH 1181
Query: 1160 HTLGEANIAYYXXXXXXXXXXXLPLVLKRIVSHKK 1194
TLG A+ Y LPL LK ++SH K
Sbjct: 1182 STLGNAD-PNYLNDDDESSDDDLPLALKMVLSHMK 1215
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.322 0.137 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,687,664
Number of Sequences: 60738
Number of extensions: 2685007
Number of successful extensions: 7370
Number of sequences better than 1.0e-05: 1
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7361
Number of HSP's gapped (non-prelim): 1
length of query: 1194
length of database: 30,389,216
effective HSP length: 118
effective length of query: 1076
effective length of database: 23,222,132
effective search space: 24987014032
effective search space used: 24987014032
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)