ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactIII0702  suspect: LH   L     KOG2543  Replication, recombination and repair                          Origin recognition complex, subunit 5

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIII0702  236042  237460 473  
         (473 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YNL261w [L] KOG2543 Origin recognition complex subunit 5              252   7e-67

>YNL261w [L] KOG2543 Origin recognition complex subunit 5
          Length = 479

 Score =  252 bits (644), Expect = 7e-67
 Identities = 144/475 (30%), Positives = 255/475 (53%), Gaps = 6/475 (1%)

Query: 4   PDVRYREEQLDFLEAFVDADPKLSPPILFIEGPHGSGKTHTLKKFFACNEEIMNILLPAK 63
           P+V +RE Q + L +++ ADP ++P  L ++G  G+GKT+TLKK+F  N  +  + L   
Sbjct: 6   PEVAFREYQTNCLASYISADPDITPSNLILQGYSGTGKTYTLKKYFNANPNLHAVWLEPV 65

Query: 64  DLIYSKSTCQRLATCLRQLLLKQFPSVETTDLDPFEAEDVYLLQKFINKLFIRFNHLVER 123
           +L+  K   Q +A  ++  L   +P++ TTD DP + E+ +LL K ++ +F+++  L E+
Sbjct: 66  ELVSWKPLLQAIARTVQYKLKTLYPNIPTTDYDPLQVEEPFLLVKTLHNIFVQYESLQEK 125

Query: 124 VNLYVILDGLDDNSQVNLETPTQLMALPGSILPQAMIQLRXXXXXXXXXXXXNYSTFKVP 183
             L++ILDG D    ++     + + L   +   + I ++             YST  +P
Sbjct: 126 TCLFLILDGFDSLQDLDAALFNKYIKLNELLPKDSKINIKFIYTMLETSFLQRYSTHCIP 185

Query: 184 TIFFPKYKPLEIE--YIVSQTPGFSDDPLLLEKM--DEIGCGNTEQFRSEIFEKYIHFLI 239
           T+ FP+Y   E+    ++S+     +D  L +++  ++I     +QF++ +   +IH ++
Sbjct: 186 TVMFPRYNVDEVSTILVMSRCGELMEDSCLRKRIIEEQITDCTDDQFQN-VAANFIHLIV 244

Query: 240 ESLIVYTGYDPTALIDIMRIKWRCFVRSLNQENIKNTVQLYKSNLELFNKPNERLIPQTS 299
           ++   YTG D  AL D++  KW  +V  + +ENI   + LYKS ++LF   ++ L     
Sbjct: 245 QAFHSYTGNDIFALNDLIDFKWPKYVSRITKENIFEPLALYKSAIKLFLSTDDNLSENGQ 304

Query: 300 RSDQNSLSGTGSVGYSSHSLCFMXXXXXXXXXXXXXXNHRYDSKVFSKKSHLXXXXXXXX 359
                + +        ++ L  +                RYD+ +FS+K+ +        
Sbjct: 305 GESAITTNRDDLENSQTYDLSIISKYLLIASYICSYLEPRYDASIFSRKTRIIQGRAAYG 364

Query: 360 XXXKPANNPRYLQPSGFSLERMLAIFQSIYPVRVSKEL-SPDFFQRDVHMKANVEVYENV 418
              K   NPRYLQPS F++ER+LAIFQ+I+P++   E  S    + +  MKAN+EV++N+
Sbjct: 365 RRKKKEVNPRYLQPSLFAIERLLAIFQAIFPIQGKAESGSLSALREESLMKANIEVFQNL 424

Query: 419 SELITSQLLTGLNMHKLGYLHERLKFKVNVTWDYILLVAGSVDFDISEYFSDVVE 473
           SEL T +L+       + YL  ++++KVNV W+ I  ++ SV F+IS+YFSD+ E
Sbjct: 425 SELHTLKLIATTMNKNIDYLSPKVRWKVNVPWEIIKEISESVHFNISDYFSDIHE 479


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.322    0.139    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,629,780
Number of Sequences: 60738
Number of extensions: 1069561
Number of successful extensions: 2645
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2641
Number of HSP's gapped (non-prelim): 1
length of query: 473
length of database: 30,389,216
effective HSP length: 110
effective length of query: 363
effective length of database: 23,708,036
effective search space: 8606017068
effective search space used: 8606017068
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)