ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactIII0763  suspect: LH   R     KOG4155  General function prediction only                               FOG: WD40 repeat

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIII0763  255963  257282 440  
         (440 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YNL253w [R] KOG4155 FOG: WD40 repeat                                  108   2e-23

>YNL253w [R] KOG4155 FOG: WD40 repeat
          Length = 422

 Score =  108 bits (270), Expect = 2e-23
 Identities = 79/265 (29%), Positives = 132/265 (49%), Gaps = 16/265 (6%)

Query: 22  LKSHYSSLLESCCKDKRVLKDYHATAVKDSRSVRTSL--NEIIALDSHSASKYVSWSRID 79
           L+S +S    S  +DKR +   H ++   SR   T +  NEI++L  H +   +++SR+D
Sbjct: 28  LQSTFSKGNTSHIEDKRFI---HVSSRSHSRFTSTPITPNEILSLKFHVSGSSMAYSRMD 84

Query: 80  GSLTVMRPPLTSDRSQDHVLIGSIKKDVHGEGKIVYSISWNPNEL-QFASVGNTPTVKIW 138
           GSLTV       D S D  +   I  D  G  K+   +SWNP  L Q A V N+  + + 
Sbjct: 85  GSLTVW---FIKDASFDKSVEVYIP-DCCGSDKLATDLSWNPTSLNQIAVVSNSSEISLL 140

Query: 139 NVVDDKL--SVLKEFKTNFKAKNFITEYDPSGKYLVVATKTNEIYIYNAESGYESCISFS 196
            + +  L  S L+      K K     YDP G +L+ ATK+ +IY+++ +  + S  S +
Sbjct: 141 LINEKSLTASKLRTLSLGSKTKVNTCLYDPLGNWLLAATKSEKIYLFDVKKDHSSVCSLN 200

Query: 197 PDEKS---DDAIHSLCWSNDSKQIIVAYKSGFIKLFSLQDDGLKFLCERRNDMKTITSLI 253
             + S   +D ++SL WSN    I + +KSG++ +   +   L+   + +     IT + 
Sbjct: 201 ISDISQEDNDVVYSLAWSNGGSHIFIGFKSGYLAILKAKHGILEVCTKIKAHTGPITEIK 260

Query: 254 MDPLGRALLVGT-HNECSIYSLPDL 277
           MDP GR  + G+    C ++++  L
Sbjct: 261 MDPWGRNFITGSIDGNCYVWNMKSL 285


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.316    0.131    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,071,891
Number of Sequences: 60738
Number of extensions: 1097140
Number of successful extensions: 4412
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4409
Number of HSP's gapped (non-prelim): 1
length of query: 440
length of database: 30,389,216
effective HSP length: 109
effective length of query: 331
effective length of database: 23,768,774
effective search space: 7867464194
effective search space used: 7867464194
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)