ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII0768 good J KOG4548 Translation, ribosomal structure and biogenesis Mitochondrial ribosomal protein L17
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII0768 258284 257496 -263
(263 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YNL252c [J] KOG4548 Mitochondrial ribosomal protein L17 286 3e-77
SPCC126.05c [J] KOG4548 Mitochondrial ribosomal protein L17 114 2e-25
Hs11545916 [J] KOG4548 Mitochondrial ribosomal protein L17 65 1e-10
At1g14620 [J] KOG4548 Mitochondrial ribosomal protein L17 61 1e-09
>YNL252c [J] KOG4548 Mitochondrial ribosomal protein L17
Length = 281
Score = 286 bits (731), Expect = 3e-77
Identities = 139/270 (51%), Positives = 197/270 (72%), Gaps = 15/270 (5%)
Query: 5 AAASSIPKAVKAGLVLSRVPIVTPELNALENKYYQYQAELERRLMWTFPSYFYFKKGTLA 64
A ASS P +K G++LSR+PI+ ELN LE KYY+YQ+ELE+RLMWTFP+YFYFKKGT+A
Sbjct: 16 ATASSAPPKIKVGVLLSRIPIIKSELNELEKKYYEYQSELEKRLMWTFPAYFYFKKGTVA 75
Query: 65 ERRFQSVQKGVISKQPGVWFPKGVPDVRHNRERSQKQDIMLPREAS-------EGSNKSD 117
E +F S+QKG ISK+ G+WFP+G+PD++H RERS KQ++ L +++ + +K D
Sbjct: 76 EHKFLSLQKGPISKKNGIWFPRGIPDIKHGRERSTKQEVKLSDDSTVAFSNNQKEQSKDD 135
Query: 118 VSRPIVPNSRTTKADENNDITSLDRKLDRTLHLLVKDDKGSWVLPSFPVDIEAKEGKKAL 177
V+RP++PN R T+AD +ND+ SL+R+L RTL+LLVKD G+W P+F + E+ K L
Sbjct: 136 VNRPVIPNDRITEADRSNDMKSLERQLSRTLYLLVKDKSGTWKFPNFDLSDES----KPL 191
Query: 178 HETAEVGLRKIGGEDINTWTVSNTPAGVLQSEKD--LQFLIKSHIIAGEFKLKDEK--SI 233
H AE L+ + G+ I TW+VS TP GVLQ E++ +F++KSHI+AG+F L K +
Sbjct: 192 HVHAENELKLLSGDQIYTWSVSATPIGVLQDERNRTAEFIVKSHILAGKFDLVASKNDAF 251
Query: 234 KEFAWLTKDEIKKAVDERYFNSIQYVLAEN 263
++FAWLTK EI + V + YFN +++LA+N
Sbjct: 252 EDFAWLTKGEISEYVPKDYFNKTEFLLADN 281
>SPCC126.05c [J] KOG4548 Mitochondrial ribosomal protein L17
Length = 268
Score = 114 bits (284), Expect = 2e-25
Identities = 79/263 (30%), Positives = 134/263 (50%), Gaps = 26/263 (9%)
Query: 2 SVKAAASSIP-KAVKAGLVLSRVPIVTPELNALENKYYQYQAELERRLMWTFPSYFYFKK 60
S K ++S P K G +L R PI+T + + E Y+Y AEL L P+ FYFKK
Sbjct: 28 SSKPLSNSTPLKGCSVGTILIRSPILTRQPSEFEKSIYKYNAELWNELSDPLPAEFYFKK 87
Query: 61 GTLAERRFQSVQKGVISKQPGVWFPKGVPDVRHNRERSQKQDIMLPREASEGSNKSDVSR 120
G++ E+ +Q QK + K+ + +ER + + L A+
Sbjct: 88 GSVGEKDWQERQKTLKGKESPF-------ETIFGKERKEMESNKLLDSATH--------- 131
Query: 121 PIVPNSRTTKADENNDITSLDRKLDRTLHLLVKDDKGS-WVLPSFPVDIEAKEGKKALHE 179
SR T+AD ND S R LD++L+LLVK K S W P+ PV +KALH
Sbjct: 132 ---LQSRVTEADTKNDERSTLRSLDKSLYLLVKKSKSSGWQFPNTPV----TSSEKALHL 184
Query: 180 TAEVGLRKIGGEDINTWTVSNTPAGVLQSEKDLQFLIKSHIIAGEFKLKDEKSIKEFAWL 239
+ L+ I E+ TW V+ P +L++E++ FL+++ ++ G + + +++ ++ W
Sbjct: 185 LCQDLLKNILDENSLTWLVARHPLALLKTEQEKTFLLRARLLNG-LDVPNLQNVYDWVWC 243
Query: 240 TKDEIKKAVDERYFNSIQYVLAE 262
T DE+K + ++S++ +L++
Sbjct: 244 TYDELKNKLSPSSWDSVKNILSD 266
>Hs11545916 [J] KOG4548 Mitochondrial ribosomal protein L17
Length = 210
Score = 64.7 bits (156), Expect = 1e-10
Identities = 50/181 (27%), Positives = 89/181 (48%), Gaps = 23/181 (12%)
Query: 96 ERSQKQDIMLPREASEGSNKSDVSRPIVPNSRTTKADENNDITSLDRKLDRTLHLLVKD- 154
+ +QDI+L ++ + + + + +R T+ADE ND TSL+RKLDR L LLV++
Sbjct: 38 DEEDEQDILLAQDLEDMWEQKFLQFKL--GARITEADEKNDRTSLNRKLDRNLVLLVREK 95
Query: 155 --DKGSWVLPSFPVDIEAKEGKKALHETAEVGLRKIGGEDINTWTVSNTPAG-------- 204
D+ W+LP E + G + L TAE L + ++ + N P G
Sbjct: 96 FGDQDVWILP----QAEWQPG-ETLRGTAERTLATLSKNNMEAKFLGNAPCGHYTFKFPQ 150
Query: 205 VLQSEKDL---QFLIKSHIIAGEFKLKDEKSIKEFAWLTKDEIKKAVDERYFNSIQYVLA 261
+++E +L F K+ ++ G+F K W+TKDE+ + +Y ++ ++
Sbjct: 151 AMRTESNLGAKVFFFKALLLTGDFSQAGNKG--HHVWVTKDELGDYLKPKYLAQVRRFVS 208
Query: 262 E 262
+
Sbjct: 209 D 209
>At1g14620 [J] KOG4548 Mitochondrial ribosomal protein L17
Length = 233
Score = 61.2 bits (147), Expect = 1e-09
Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 25/160 (15%)
Query: 115 KSDVSRPIVPNSRTTKADENNDITSLDRKLDRTLHLLV-------KDDKGSWVLPSFPVD 167
K + VP R T+AD+NND SL R LD+ L+LL+ DK W P D
Sbjct: 78 KGEYQMDYVPAPRITEADKNNDRKSLYRALDKKLYLLIFGKPFGATSDKPVWHFPEKVYD 137
Query: 168 IEAKEGKKALHETAEVGLRKIGGEDINTWTVSNTPAG--VLQSEKDL-------QFLIKS 218
E L + AE L+ + G+ +T+ V N P +Q +++ +F K
Sbjct: 138 SE-----PTLRKCAESALKSVVGDLTHTYFVGNAPMAHMAIQPTEEMPDLPSYKRFFFKC 192
Query: 219 HIIAGEFKLKDEKSIKEFAWLTKDEIKKAVDER--YFNSI 256
++A D + ++F W+TKDE+ + E+ +FN +
Sbjct: 193 SVVAA--SKYDISNCEDFVWVTKDELLEFFPEQAEFFNKM 230
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.314 0.132 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,574,505
Number of Sequences: 60738
Number of extensions: 672191
Number of successful extensions: 1588
Number of sequences better than 1.0e-05: 4
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1578
Number of HSP's gapped (non-prelim): 4
length of query: 263
length of database: 30,389,216
effective HSP length: 104
effective length of query: 159
effective length of database: 24,072,464
effective search space: 3827521776
effective search space used: 3827521776
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)