ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactIII0925  suspect: LH   J     KOG1613  Translation, ribosomal structure and biogenesis                Exosomal 3'-5' exoribonuclease complex, subunit Rrp43

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIII0925  320298  321434 379  
         (379 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YCR035c [J] KOG1613 Exosomal 3'-5' exoribonuclease complex subun...   379   e-105

>YCR035c [J] KOG1613 Exosomal 3'-5' exoribonuclease complex subunit Rrp43
          Length = 394

 Score =  379 bits (974), Expect = e-105
 Identities = 193/386 (50%), Positives = 265/386 (68%), Gaps = 12/386 (3%)

Query: 3   ESIDIHPIVFPPEVLARISPDISLQRHLSLETRPCSRGFEEFRDVAINDGNISRYSTNCQ 62
           E+I+IHPI FPPEVLARISP++SLQRHLSL  RPC R +EEFRDVAI +  +SRY+    
Sbjct: 8   ETIEIHPITFPPEVLARISPELSLQRHLSLGIRPCLRKYEEFRDVAIENNTLSRYADAGN 67

Query: 63  NATTNNIIGSSLLRSGKTFVXXXXXXXXXXXXLPA-NNTEDVGEEELMKLSEDTDRLCEN 121
             T NNI+GS++L+SGKT V              A  + +D GEEEL +++++ D +   
Sbjct: 68  IDTKNNILGSNVLKSGKTIVITSITGGIIEETSAAIKDLDDFGEEELFEVTKEEDIIANY 127

Query: 122 STIYPVVEVQRGRVGGPTDEEMITSEKLYKTLLHSGILKKTALAVSCGIRRTEEDGSVTT 181
           +++YPVVEV+RGRVG  TDEEM  S+KL+ ++LHS IL K AL V  G+R   EDG+ + 
Sbjct: 128 ASVYPVVEVERGRVGACTDEEMTISQKLHDSILHSRILPKKALKVKAGVRSANEDGTFSV 187

Query: 182 IYSDELLDEEKKINEAN---NRKWSYVLYAKIQVFSRNGPIYDLCWNSLISALKTVQLPR 238
           +Y DEL  E+  +NE N    RKWSYVLYAKI V SR GP++DLCWNSL+ AL++V+LPR
Sbjct: 188 LYPDEL--EDDTLNETNLKMKRKWSYVLYAKIVVLSRTGPVFDLCWNSLMYALQSVKLPR 245

Query: 239 AFLDERAADLKIAIRTRGRSMTIRETYDILCDPHKSLPLKLNEGELCYGSNYGIIDIEPL 298
           AF+DERA+DL++ IRTRGRS TIRETY+I+CD  KS+PL +N   + + SNYGI++++P 
Sbjct: 246 AFIDERASDLRMTIRTRGRSATIRETYEIICDQTKSVPLMINAKNIAFASNYGIVELDPE 305

Query: 299 AQLAKNDD------EMDVDKPTSVLLADXXXXXXXXXXXXXXXXXXNKNGQFKAATIIGG 352
            QL  +D+      ++D+DK  +VL+AD                    +G +K  T++GG
Sbjct: 306 CQLQNSDNSEEEEVDIDMDKLNTVLIADLDTEAEETSIHSTISILAAPSGNYKQLTLVGG 365

Query: 353 DSKITPEMIKRCIFLSKQRSKDIESK 378
            +KITPEMIKR + LS+ R+ D+ ++
Sbjct: 366 GAKITPEMIKRSLLLSRVRADDLSTR 391


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.316    0.134    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,277,355
Number of Sequences: 60738
Number of extensions: 857639
Number of successful extensions: 1865
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1861
Number of HSP's gapped (non-prelim): 1
length of query: 379
length of database: 30,389,216
effective HSP length: 108
effective length of query: 271
effective length of database: 23,829,512
effective search space: 6457797752
effective search space used: 6457797752
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)