ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII0942 suspect: HSP K KOG1878 Transcription Nuclear receptor coregulator SMRT/SMRTER, contains Myb-like domains
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII0942 327553 323357 -1399
(1399 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YCR033w [K] KOG1878 Nuclear receptor coregulator SMRT/SMRTER con... 281 4e-75
7292802 [K] KOG1878 Nuclear receptor coregulator SMRT/SMRTER con... 56 5e-07
7295202 [M] KOG4177 Ankyrin 55 1e-06
>YCR033w [K] KOG1878 Nuclear receptor coregulator SMRT/SMRTER contains
Myb-like domains
Length = 1226
Score = 281 bits (720), Expect = 4e-75
Identities = 138/259 (53%), Positives = 186/259 (71%), Gaps = 8/259 (3%)
Query: 498 CIFPMLEPEMKLWLLKNKPREERVKNQKYLLTKPIEYLFDYPFFAQAWIIHDQAVKPIIT 557
CIFP+ + E +LW LKN+ R + + QKYLL K I +YPF+AQ +IH QA I+T
Sbjct: 457 CIFPLPKAETRLWELKNQKRNKIISEQKYLLKKAIRNFSEYPFYAQNKLIHQQATGLILT 516
Query: 558 KNLTKIKRYEYLRNLQLKDQFFKLQDIWEKKCDQMTELSESFHRSEPSGEQNKYENLQAN 617
K ++KIK+ E+L+ + LK +F LQ +EK+C+ +T+LSE+ + E ++ ++E ++
Sbjct: 517 KIISKIKKEEHLKKINLKHDYFDLQKKYEKECEILTKLSENLRKEEIENKRKEHELMEQK 576
Query: 618 -----VENANEAFEQRPTSS---RRRNRADFVDDNDIENVLLQIDPDYKHHQLAANIPAM 669
+E E + P+SS RRRNRADFVDD ++ENVLLQIDP+YKH+Q AA IP +
Sbjct: 577 RREEGIETEKEKSLRHPSSSSSSRRRNRADFVDDAEMENVLLQIDPNYKHYQAAATIPPL 636
Query: 670 TLNPVDKFACKFKDVNNLVTDKDAWASRLLTDRIDSFTPYEHELFVEGYLTYPKKFGKVS 729
L+P+ K + KF DVNNLVTDK WASR+L D D+FT +EH LF+EGYL +PKKFGK+S
Sbjct: 637 ILDPIRKHSYKFCDVNNLVTDKKLWASRILKDASDNFTDHEHSLFLEGYLIHPKKFGKIS 696
Query: 730 HYMGGLRTPEECVLHYYRT 748
HYMGGLR+PEECVLHYYRT
Sbjct: 697 HYMGGLRSPEECVLHYYRT 715
Score = 115 bits (289), Expect = 4e-25
Identities = 85/320 (26%), Positives = 155/320 (47%), Gaps = 56/320 (17%)
Query: 878 INIEAKKESDTET---ENEATTDGDYNIKQQVMDSSVNVSEPVYMVQEQVLLSNKPYEDI 934
+ ++ KE T T E ++ + + N++ ++ S +P+ ++ + + E+
Sbjct: 752 VEVDESKEESTNTIEKEEKSENNAEENVQPVLVQGSEVKGDPLGTPEKVENMIEQRGEEF 811
Query: 935 VPMLADMTSKSVINESVKNADHADIGFDNTESH----------LKPEDEVSSKHSLYDQS 984
++ + +N+ +K A H ++G ++ +S + P+ V + + +
Sbjct: 812 A---GELENAERVND-LKRA-HDEVGEESNKSSVIETNNGVQIMDPKGAVQNGYYPEETK 866
Query: 985 NVN-SADQPMKKKLKQTEAVHKSSYWSVQEAKKFPELLREFGSNWTSISQKLGTKSTTMV 1043
++ S + +++K ++ HK+SYWSV+E++ FPELL+EFGS W+ IS+KLGTKSTTMV
Sbjct: 867 ELDFSLENALQRKKHKSAPEHKTSYWSVRESQLFPELLKEFGSQWSLISEKLGTKSTTMV 926
Query: 1044 KNYFQRKAEQNGWYALVEMGNNQLASSSVLSSGDQSTKPVAIAPAPNVSSAIIVNSLPSP 1103
+NY+QR A +NGW LV+ L S Q ++ + PN+++
Sbjct: 927 RNYYQRNAARNGWKLLVD--ETDLKRDGTSSESVQQSQILIQPERPNINA---------- 974
Query: 1104 ATVNKPAEKPSIEPLPLQTIPQQQKPAVGFF-------NDSKLSSIHKP--SFSLTGNED 1154
IP QQ+PA+G+F +++ +SSI F + D
Sbjct: 975 ----------------YSNIPPQQRPALGYFVGQPTHGHNTSISSIDGSIRPFGPDFHRD 1018
Query: 1155 SFSRLPTPTQGLPPQHSPVI 1174
+FS++ P LPP P I
Sbjct: 1019 TFSKISAPLTTLPPPRLPSI 1038
>7292802 [K] KOG1878 Nuclear receptor coregulator SMRT/SMRTER contains
Myb-like domains
Length = 3502
Score = 55.8 bits (133), Expect = 5e-07
Identities = 44/200 (22%), Positives = 93/200 (46%), Gaps = 10/200 (5%)
Query: 548 HDQAVKPIITKNLTKIKRYEYLRNLQLKDQFFKLQDIWEKKCDQMTELSESFHRSEPSGE 607
H ++ + ++ K+K + N L +++ K Q W+++C++M + + ++ +
Sbjct: 859 HQSQIRAPLLLHIRKLKAERWAHNQGLVEKYTKDQADWQRRCERME--ASAKRKAREAKN 916
Query: 608 QNKYENLQANVENANEAFEQ-RPTSSRRRNRADFVDDNDIENVLLQIDPDYKHHQLAANI 666
+ +E + + E E+ SR ++ AD + ++ + Q D K A
Sbjct: 917 REFFEKVFTELRKQREDKERFNRVGSRIKSEADL--EEIMDGLQEQALEDKKMRSYAVIP 974
Query: 667 PAMTLNPVDKFACKFKDVNNLVTDKDAWASRLLTDRIDSFTPYEHELFVEGYLTYPKKFG 726
P M + + C + + N L+ +D A ++ +T E E F E YL +PK FG
Sbjct: 975 PLM--HDARQRRCAYHNENGLI--EDMVAVHQQRKALNMWTAGEKETFKEKYLQHPKNFG 1030
Query: 727 KVSHYMGGLRTPEECVLHYY 746
++ + ++P++CV +YY
Sbjct: 1031 AIAASL-DRKSPQDCVRYYY 1049
>7295202 [M] KOG4177 Ankyrin
Length = 2443
Score = 54.7 bits (130), Expect = 1e-06
Identities = 73/347 (21%), Positives = 135/347 (38%), Gaps = 37/347 (10%)
Query: 804 VSQTSVSETPVEQSVRTVEQVVPEVDHPPPAEVHPVSTLEQPPTLEQEPKSTEEPPTLAK 863
V +S+ ET E + V+ + H Q P ++P PT A
Sbjct: 1868 VESSSIEETIAEFEAKKVKY-----------DFHGGEPKTQIPKFTRKPSDDSMKPTAAP 1916
Query: 864 KV------EPSLATFQEQPVINI-------EAKKESDTETEN--EATTDGDY---NIKQQ 905
+ E L T E+P+ I EA+K S+ + + G+ K
Sbjct: 1917 RATVESETESVLETKAEKPISKIPVKTIPTEAQKVSEVDARKITQDFLQGEKLAAEPKPS 1976
Query: 906 VMDSSVNVSEPVYMVQEQVLLSNKPYEDIVPMLADMTSKSVINESVKN--ADHADIGFDN 963
S + EP V +QV +K +D+V A + + + +E +K+ DH++I +
Sbjct: 1977 PAASKIPKVEPRKSVDKQVDRESKILDDVVASTATIMTAGLGDEQLKDQLVDHSEIIAKS 2036
Query: 964 TESHLKPEDEVSSKHSLYDQSNVNSADQPMKKKLKQTEAVHKSSYWSVQEAK-KFPELLR 1022
K + + + H + ++ + + K+++ + + VQ + K E +
Sbjct: 2037 ETVAEKVTELLDTFHKIEEKVTKSEKTSEISSKVEELVKIEEKPLSQVQPKEDKVAEKVA 2096
Query: 1023 EFGSNWTSISQKLGTKSTTMVKNYFQRKAEQNGWYALVEMGNNQLASSSVLSSGDQSTKP 1082
E + I +K+ T + F +QN ++ + L SS +S +
Sbjct: 2097 EVIETFHKIEEKITTADARELTRDFLSMEQQNQLPSMPQAAEKPLESSLTSTSASEPESI 2156
Query: 1083 VAIAPAPNVSSAIIVNSLPSPATVNKPAEKPSIEPLPLQTIPQQQKP 1129
V + P+P S +V V + KP IEP P++T ++KP
Sbjct: 2157 VTVKPSPPASKIPVVE---PRKIVFDESTKPLIEPEPVKT--TEKKP 2198
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.308 0.127 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,062,302
Number of Sequences: 60738
Number of extensions: 3466192
Number of successful extensions: 13546
Number of sequences better than 1.0e-05: 3
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 13526
Number of HSP's gapped (non-prelim): 16
length of query: 1399
length of database: 30,389,216
effective HSP length: 119
effective length of query: 1280
effective length of database: 23,161,394
effective search space: 29646584320
effective search space used: 29646584320
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)