ORF STATUS Function Best COG Functional category Pathways and functional systems
r_klactIII0966 good R KOG2897 General function prediction only DNA-binding protein YL1 and related proteins
Only best alignment is shown:
BLASTP 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= r_klactIII0966 333038 335152 705
(705 letters)
Database: KOG eukaryal database 04/03
60,738 sequences; 30,389,216 total letters
Searching..................................................done
Color Key for Alignment Scores: 
Score E
Sequences producing significant alignments: (bits) Value
YDR485c [R] KOG2897 DNA-binding protein YL1 and related proteins 355 1e-97
SPBP35G2.13c [R] KOG2897 DNA-binding protein YL1 and related pro... 58 6e-08
7297788 [R] KOG2897 DNA-binding protein YL1 and related proteins 54 6e-07
>YDR485c [R] KOG2897 DNA-binding protein YL1 and related proteins
Length = 810
Score = 355 bits (911), Expect = 1e-97
Identities = 254/814 (31%), Positives = 386/814 (47%), Gaps = 151/814 (18%)
Query: 9 ELLMATRSRRANAGNKMQKLLQQELEDVQKQTSMLG---------DDEINLLFQ------ 53
E ++ TRSRR+NAGNK+QKLL+QEL D++ + +DEI LLFQ
Sbjct: 30 EFIIQTRSRRSNAGNKLQKLLEQELRDIESTKRQISSYKNGNDDEEDEIGLLFQEDEDDE 89
Query: 54 -------------------XXXXXXXXXXXSKKRLEDEDMFSDS-GDELSEASDADXXXX 93
S ++ D+ MFS S ++ S +D D
Sbjct: 90 DFEMMAKDDDDEGEEKEDETQSIRKEPSQASSEQAADDLMFSSSESEDSSNENDEDAEEK 149
Query: 94 XXXXXXXXXXXXXXXXXSRVPVI---KRPKKAPVDKISKS--TIDEINAESLLTESRRTS 148
+ PV+ ++PK + I +S T +++NAE+LL +RRTS
Sbjct: 150 EIRRQELLSRKKRNKRLQKGPVVIKKQKPKPKSGEAIPRSHHTHEQLNAETLLLNTRRTS 209
Query: 149 KRSAVVANKLKVYENLTQAEKRRKIIQEKLRKQREKQSLKPLTQEERLKVAEETERINVS 208
KRS+V+ N +KVYE L++AEK+RKIIQE++RK +E++S LTQEERL++A+ETE++N+
Sbjct: 210 KRSSVMENTMKVYEKLSKAEKKRKIIQERIRKHKEQESQHMLTQEERLRIAKETEKLNIL 269
Query: 209 SLNKYKEQELSKKQTRLAMQLREKMKFKDGEHIIRWLSTQWEVSPLVELEDRAYWELYTS 268
SL+K+KEQE+ KK+ RLA+Q R+K KF+ E I+++LST W ++P +ELEDR YW+ +
Sbjct: 270 SLDKFKEQEVWKKENRLALQKRQKQKFQPNETILQFLSTAWLMTPAMELEDRKYWQEQLN 329
Query: 269 KRDKTKKKYVRR---------------RKAQIEEDNLRXXXXXXXXXXXXXXSSVDVINK 313
KRDK KKKY R+ +K + EE + I +
Sbjct: 330 KRDKKKKKYPRKPKKNLNLGKQDASDDKKRESEESIKNDGDVNSLGENSSSVHNQKRIEE 389
Query: 314 SETIPNAENELTAXXXXXXXXXXXCPPIVM------STPERENEIQEETSAKXXXXXXXX 367
+ T E E + P + + +++ + E +++
Sbjct: 390 TSTNDTVEGESSPDAAVSRVNSDELKPTALPDVTLDAIANKQSTVDEAPNSQPQKNIITN 449
Query: 368 XXXXXXXXKSLKEASSTESPTAALSVETIESVERT--------QFGSQEDDCKQICTESP 419
+ ++ + E +S +ES E T Q SQ D+ + +P
Sbjct: 450 EQKITNVGEPIQNLHNEEIKDEMVS--ALESRENTFENSSPAAQVVSQRDN-----SATP 502
Query: 420 TLSSAESRSNDKIVLKEAADI-------------------------SNQNIETVKHITFA 454
T S++ + + D I++ DI SN ++ +K +TF
Sbjct: 503 TPSNS-TGTEDTILISPDTDIKGEPEPCLKTEGIENLSHNVPQETKSNTDVSFLKQVTFT 561
Query: 455 ETDQISLINSEDPPIFVQSSMEATDLVESGELGXXXXXXXXXXXXXXXXXXXXXPTYEGP 514
+ Q+++I++E+ P S + ++ ES TYEGP
Sbjct: 562 DHPQVAIIDTEESP----SKKDTANVDES-----------------SAENSLSTQTYEGP 600
Query: 515 VQRVGKNFVILYTFPDHPIATQNSEVRKIILGKNWV----LPSKARPDELETLM-KITSS 569
Q +NFV LY FP+ P ++ + G W L + RP +++T+ I S
Sbjct: 601 EQLTSRNFVTLYDFPNAPPNLKDFNTN--LFGDRWSYTNGLSATQRPQDMKTVFHSILPS 658
Query: 570 EEQEPLQSILIP---DMSILDKFPRFGEFNKKTLXXXXXXXXXXXXXXXXXXAPTGVFLP 626
Q + S + D+S L FP FGE++KK + PTGVFL
Sbjct: 659 PPQSSVPSPTVDISLDLSALANFPSFGEYDKKIVHQINTEINKDLEIKIKTQPPTGVFLA 718
Query: 627 NGIRKNCLITNRECKYFDPKNGVPYSDVEAIKTIQLLQE----------------YYDDN 670
NGIRK CLITN+EC+YFDP+ GVPYSDVEA K IQ +Q+ +D+
Sbjct: 719 NGIRKKCLITNKECQYFDPRTGVPYSDVEAYKIIQRIQDPISKEEGRSDIKRDETTNEDS 778
Query: 671 GEPIEPKFKWYGFGRGGIYLDVHQKPASGVPEGF 704
+ + +FKW+GF GGIYLD+ Q+PA GVPEGF
Sbjct: 779 DDQV--RFKWFGFKNGGIYLDLSQRPAKGVPEGF 810
>SPBP35G2.13c [R] KOG2897 DNA-binding protein YL1 and related proteins
Length = 316
Score = 57.8 bits (138), Expect = 6e-08
Identities = 60/243 (24%), Positives = 103/243 (41%), Gaps = 21/243 (8%)
Query: 9 ELLMATRSRRANAGNKMQKLLQQE-LEDVQKQTSMLGDDEINLLFQXXXXXXXXXXXSKK 67
E L+A R+RRANAGNKM++LL++E L Q+ + +DE + + S+
Sbjct: 5 ESLVAGRTRRANAGNKMRELLEKEHLRMTQQNAEIEKEDEEYNIEEEEEAERDIEISSES 64
Query: 68 RLEDEDM--FSDSGDELSE-ASDADXXXXXXXXXXXXXXXXXXXXXSRVPVIKRPKKAPV 124
E+ ++ + G+E+ + D + + P + P
Sbjct: 65 SDEEAELKKLEEEGEEVEKILRDEERIKKRKIQKNRAANLQRTLQPPKRPTPSAASEVPK 124
Query: 125 DKISKSTIDEINAESLLTESRRTSKRSAVVANKLKVYENLTQAEKRRK-IIQEKLRKQRE 183
K K +D +RRTS R V L +A+ RRK + +Q+
Sbjct: 125 KKYKKIKVD--------PSARRTSSRMHTVLMAQSTETRLQEAKPRRKYTVSASANRQK- 175
Query: 184 KQSLKPLTQEERLKVAEETERINVSSLNKYKEQELSKKQTRLAMQLREKMKFKDGEHIIR 243
+TQ++R + A +TE N+SSL Y E +Q RL ++ + E I++
Sbjct: 176 ----GTMTQQQRFEEAAKTEAQNLSSLRNYVHLE---EQRRLRLKRNAAKHRQLREPILK 228
Query: 244 WLS 246
++S
Sbjct: 229 FIS 231
>7297788 [R] KOG2897 DNA-binding protein YL1 and related proteins
Length = 351
Score = 54.3 bits (129), Expect = 6e-07
Identities = 62/226 (27%), Positives = 100/226 (43%), Gaps = 35/226 (15%)
Query: 11 LMATRSRRANAGNKMQKLLQQELEDVQKQTSMLG--DDEINLLFQXXXXXXXXXXXSKKR 68
+ A+RSRR NAGNK+ LL +E ED +TS G +DE + ++ ++
Sbjct: 1 MAASRSRRNNAGNKIAHLLNEEEEDDFYKTSYGGFQEDEEDKEYE--------QKDEEED 52
Query: 69 LEDEDMFSDSGDE-LSEASDADXXXXXXXXXXXXXXXXXXXXXSRVPVIKRPKKAPVDKI 127
+ D D D DE +S+ +A P +K+ KA
Sbjct: 53 VVDSDFSIDENDEPVSDQEEAPEKKRKRGVVNTKAYKETK------PAVKKETKATPALH 106
Query: 128 SKSTIDEINAE------SLLTESRRTSKRSAVV---ANKLKVYENLTQAEKRRKIIQEKL 178
K + ++L R++ + S + A K+++ E L A KR+K
Sbjct: 107 KKRPGGGVTKRRPRPRFTVLDSGRKSIRTSTAIKTQATKIRLKE-LDDARKRKK------ 159
Query: 179 RKQREKQSLKPLTQEERLKVAEETERINVSSLNKYKEQELSKKQTR 224
+K R + + TQEE L+ A+ TE N SL K+++ EL KK++R
Sbjct: 160 KKVRVEDYMP--TQEELLEEAKITEEENTKSLEKFQKMELEKKKSR 203
Database: KOG eukaryal database 04/03
Posted date: Apr 14, 2003 1:07 PM
Number of letters in database: 30,389,216
Number of sequences in database: 60,738
Lambda K H
0.310 0.128 0.348
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,137,033
Number of Sequences: 60738
Number of extensions: 1294567
Number of successful extensions: 5800
Number of sequences better than 1.0e-05: 3
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5786
Number of HSP's gapped (non-prelim): 10
length of query: 705
length of database: 30,389,216
effective HSP length: 113
effective length of query: 592
effective length of database: 23,525,822
effective search space: 13927286624
effective search space used: 13927286624
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)