ORF      STATUS       Function Best COG  Functional category                                          Pathways and functional systems
r_klactIII0988  suspect: LH   Z     KOG0160  Cytoskeleton                                                   Myosin class V heavy chain

BLASTP 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= r_klactIII0988  344101  345966 622  
         (622 letters)

Database: KOG eukaryal database 04/03 
           60,738 sequences; 30,389,216 total letters

Searching..................................................done

Color Key for Alignment Scores:   


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g33240 [Z] KOG0160 Myosin class V heavy chain                       50   8e-06

>At2g33240 [Z] KOG0160 Myosin class V heavy chain
          Length = 1611

 Score = 50.4 bits (119), Expect = 8e-06
 Identities = 74/334 (22%), Positives = 138/334 (41%), Gaps = 21/334 (6%)

Query: 274  ALCDYILTLSKECNAKLCTLESTKEQEDEDIKFKLAQTEDLKARLEDITNKYVKN--TKE 331
            AL D    L KE       LE  K+   E  + K  + EDL++ L D+  +  +   TK 
Sbjct: 915  ALQDAKTKLEKEVEELTSCLELEKQMRMELEQVKTQEVEDLRSALNDMKLQLGETQVTKS 974

Query: 332  IDNVKAEXXXXXXXXXEVIEFNNICKQFFVEYKGQIALLSEQINNEVTKNETLKEKQERI 391
             + +K +           +EF  + K+  +E    +A  +EQ+ + V+   +L+ K +  
Sbjct: 975  EEILKLQSALQDMQ----LEFEELAKE--LEMTNDLAAENEQLKDLVS---SLQRKIDES 1025

Query: 392  SKNYE--SEKSRNMELSESLAVSQGVL--QDMEKKYLENINKTTGPEIVQDLSCSHAENL 447
               YE  S+ S      E   + QGV+   + E + L+ +  T   +I   L   H + +
Sbjct: 1026 DSKYEETSKLSEERVKQEVPVIDQGVIIKLEAENQKLKALVSTLEKKI-DSLDRKHDDLV 1084

Query: 448  DL-KTKIEKITKGNSRLVKDCQRERKKVLDLRKQKGLTSKYVDGILAFQNYCIQFLTQYI 506
            DL + KI++  K      K C+   K+V+D  K+    S+  +  L         L +  
Sbjct: 1085 DLLERKIDETEKKYEEASKLCEERLKQVVDTEKKYEEASRLCEERLKQVVDTETKLIELK 1144

Query: 507  MSFKSAIDLADLLHVEQQLFQVSSFNPLSYRNLEYHSERDLLAHL---QSFESDSNELFQ 563
             S +   +    +  E ++ +  +    + R +      DL   +   Q  E+  +E F 
Sbjct: 1145 TSMQRLEEKVSDMEAEDKILRQQALRNSASRKMSPQKSLDLFVFMYLFQPVENGHHESFA 1204

Query: 564  NL-SNNILVQTFKKYTIEQNANKFLTSQLQVLRK 596
             + S      +F++  IEQ  ++F+   L+ + K
Sbjct: 1205 PIPSRRFGAMSFRRSQIEQQPHEFVDVLLKCVSK 1238


  Database: KOG eukaryal database 04/03
    Posted date:  Apr 14, 2003  1:07 PM
  Number of letters in database: 30,389,216
  Number of sequences in database:  60,738
  
Lambda     K      H
   0.311    0.128    0.350 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,794,573
Number of Sequences: 60738
Number of extensions: 1543812
Number of successful extensions: 5669
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5669
Number of HSP's gapped (non-prelim): 1
length of query: 622
length of database: 30,389,216
effective HSP length: 112
effective length of query: 510
effective length of database: 23,586,560
effective search space: 12029145600
effective search space used: 12029145600
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)